Zmor038467.1
Basic Information
- Insect
- Zophobas morio
- Gene Symbol
- -
- Assembly
- GCA_027724725.1
- Location
- JALNTZ010000005.1:900860-903503[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.039 2.4 10.0 1.0 2 23 18 39 18 39 0.98 2 16 0.0084 0.51 12.1 2.5 1 23 119 142 119 142 0.96 3 16 0.031 1.8 10.3 0.6 1 23 183 206 183 206 0.97 4 16 0.0021 0.13 14.0 1.8 1 23 215 238 215 238 0.96 5 16 0.0024 0.15 13.8 1.5 1 23 247 270 247 270 0.98 6 16 0.0049 0.29 12.8 0.3 1 23 279 302 279 302 0.94 7 16 3.8 2.3e+02 3.7 6.3 1 23 404 426 404 427 0.94 8 16 0.018 1.1 11.0 5.5 1 23 436 458 436 459 0.96 9 16 0.11 6.5 8.6 2.2 1 23 468 490 468 491 0.93 10 16 0.00057 0.034 15.8 2.2 1 23 500 523 500 523 0.95 11 16 0.015 0.9 11.3 4.7 1 23 530 552 530 553 0.96 12 16 1.1 66 5.4 4.9 1 23 562 584 562 585 0.94 13 16 0.01 0.63 11.8 6.3 1 23 594 617 594 617 0.97 14 16 0.00024 0.015 16.9 3.9 1 23 626 648 626 649 0.96 15 16 0.00059 0.036 15.7 1.5 1 23 658 681 658 681 0.97 16 16 0.012 0.71 11.6 2.1 1 21 690 710 690 713 0.90
Sequence Information
- Coding Sequence
- ATGTCGTTTCTGGAATACTCCGACAAGTTCGCCCCCATGAAAATGCCCCCTCGTTGCAACCTCTGTCCCTTCTCCACGACGTCGTCTTTCCTGATGGTGAACCACGTAAGGCGCCACCAAGCCCCCTTGCAACATTTCAACTGCGAAAACATTGAAATTTTCCATTGCAAGGACTGCACTTTCGGAACAAAATTAACCCTTTTATTCAAACAACACCTCCGAGAGCACCGCCACATCCAAGAATCCGACACCGTTCGGAACTATTTTTGTGACAAATGCAAGTTTGAGACACATTTTGCTTTGAAGTGGCTTCACCACTCAATTCAGTGTTCAAAAAATTCGACAAATCGGTGGTACGAGTGCGACCAGTGCAGCCAAAAGTTAAAACGAAAATACTCTTTGAGGATGCACAAAATTTCGAAACATTTGAACGACGACGAACGAATTTGGTACCACTGTGCACAGTGTTCGTATAAAGCTAAACACCAGTGTTATTTAAAGCGACATGAAATGAATCGGCATTTGGATGAACAAAGTATAAAGTGGTTTGAGTGCGACAAGTGTGACTATAAAGCTAAGGAAAAGTATGTTTTGAAGAGTCACGTTAAAGTGCTTCATTTGAGCGACAAGGACATAAAGTGGTATGAGTGCGAAAAGTGCCAATTTAAAGCTAAACGTAAGTCAGGGTTAAAAGCGCACATAAAATTTAAGCATTTAGATAAAGAAAGTGTTAAATGGTACGAATGTGTTAAATGTTCTTATAAAAGTAAGCGAAATGTGGATTTGAGCAGACACGTGAAAACGCAACATTCGCATATAAAGAATATTATGTGGTTCGAGTGCGACAGGTGCCCGTTTAAAGCTAAATCTAGTTCGAATTTGAAAATTCACGTGAATGCCTTACATCTGGAAGGACTAGATGTCAAATGGCACACCGAGATGTCAATTCTGGAATACTCAAACCACCTCTCTTCGTTACCCCATTTTAACTGCGAAAATGCATCCCTGGAAAATTATTTCTGCAAACACTGCAACTTTCAAACAGACTTAGCCGTTCTTTTCAAACAACACAGCTACCAAAAAAATCCAACCAAAAAGTACACTTGTGGAAAATGCTCTTTCGAAACCCACTTCTCGCTGACGTGGCTTCAACACACCACACAATGTTCGAAAAATGTCTTGAAAACCAACCAAGACGAAATAATTTGGCATCAGTGTGACTCGTGTTCATACCGAGGCAAAGAAAAGCGCCACTTGAAAAATCACACAATCGCCCACCATTTCAACGACCAAGACATCAAGTGGTACGAATGCGAGCAGTGCACCTACAGAACTAAGCACCGAGAGCGGCTCAAAACCCACATAATCACGCACCACTTGGACGACCACGATATTAAATGGCACGAGTGCCAGAAATGTCCATACAAAGCTAAACTAAAATCGACTTTGAAAGTCCACGTAATCGCGCATCACTTAGACGAGGAAAACATTAAATGGTACGAATGCCAAAAGTGCCAATTCCGAACCAAGACCAGTTCGAATTTAAAGCAGCACGTCAATGCGCGCCACGAACAGGATGGTAAATGGTATGAATGTGACAAATGCCCGTATAAAGCTAAATACAAACACTATTTGAAAAGTCACGTGATTACGCACCATTTGGACGAGCGGGAGATTAAGTGGTACGAATGCGACAAGTGCCCGTTTAAAGCTAAGCATAGTTGCGGTTTGAAAAGTCACGTGAGCGCTCACCATTTCCACGGGAAAGTCGTCAAGTGGCATGAATGTAAGCAGTGCCCGTACAAAACTAAGTACAAAAGTCATTTGAAAATGCACGAGAATACGCAGCATGTGGACGATGAGGTGGTTAAATGGTACGAGTGTGGACAGTGTCCGTATAAAGCTAAACAGAATTCGCATTTGAAAAGACACGTAAATACGCACCATTTGGACGAGCTGGAAGTCAAGTGGTACGAATGCCAGCAGTGTTCGTACAGATCCAAGCAAAAAGGCAATTTAAAGCAACACGTGAATTCGCTGCATTCGAATGGGCAGAATGTCGAATGGTACGAGTGCAAAGAGTGTCCATACAGAGCTAAATATCGCTGTAATTTAAAAAGGCACGTGGTAGCGCGACATTTGGATAAGCAAGAAAGTAACTAG
- Protein Sequence
- MSFLEYSDKFAPMKMPPRCNLCPFSTTSSFLMVNHVRRHQAPLQHFNCENIEIFHCKDCTFGTKLTLLFKQHLREHRHIQESDTVRNYFCDKCKFETHFALKWLHHSIQCSKNSTNRWYECDQCSQKLKRKYSLRMHKISKHLNDDERIWYHCAQCSYKAKHQCYLKRHEMNRHLDEQSIKWFECDKCDYKAKEKYVLKSHVKVLHLSDKDIKWYECEKCQFKAKRKSGLKAHIKFKHLDKESVKWYECVKCSYKSKRNVDLSRHVKTQHSHIKNIMWFECDRCPFKAKSSSNLKIHVNALHLEGLDVKWHTEMSILEYSNHLSSLPHFNCENASLENYFCKHCNFQTDLAVLFKQHSYQKNPTKKYTCGKCSFETHFSLTWLQHTTQCSKNVLKTNQDEIIWHQCDSCSYRGKEKRHLKNHTIAHHFNDQDIKWYECEQCTYRTKHRERLKTHIITHHLDDHDIKWHECQKCPYKAKLKSTLKVHVIAHHLDEENIKWYECQKCQFRTKTSSNLKQHVNARHEQDGKWYECDKCPYKAKYKHYLKSHVITHHLDEREIKWYECDKCPFKAKHSCGLKSHVSAHHFHGKVVKWHECKQCPYKTKYKSHLKMHENTQHVDDEVVKWYECGQCPYKAKQNSHLKRHVNTHHLDELEVKWYECQQCSYRSKQKGNLKQHVNSLHSNGQNVEWYECKECPYRAKYRCNLKRHVVARHLDKQESN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -