Zmor040478.1
Basic Information
- Insect
- Zophobas morio
- Gene Symbol
- -
- Assembly
- GCA_027724725.1
- Location
- JALNTZ010000005.1:20507360-20509053[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 1.5 91 5.0 0.9 1 21 84 104 84 105 0.94 2 13 0.053 3.2 9.6 0.1 5 23 105 123 104 123 0.96 3 13 0.0055 0.33 12.6 3.0 1 23 133 156 133 156 0.98 4 13 0.034 2.1 10.1 0.4 1 23 161 184 161 184 0.95 5 13 0.0073 0.44 12.3 5.9 1 23 193 216 193 216 0.94 6 13 0.00049 0.029 16.0 3.5 1 23 225 248 225 248 0.96 7 13 1.8 1.1e+02 4.8 2.5 1 20 257 276 257 277 0.95 8 13 4.9e-05 0.0029 19.1 2.3 1 23 301 324 301 324 0.95 9 13 0.0031 0.19 13.4 2.6 1 23 333 356 333 356 0.95 10 13 0.0073 0.44 12.3 1.2 1 23 365 388 365 388 0.97 11 13 0.026 1.6 10.5 1.0 1 23 397 420 397 420 0.95 12 13 0.0068 0.41 12.3 2.9 1 23 429 452 429 452 0.97 13 13 3e-05 0.0018 19.8 1.7 1 23 493 516 493 516 0.98
Sequence Information
- Coding Sequence
- ATGGAAACACTGGAATATTCCGTAGCTTACATGGCACACAAGAAGTCTTCCCTGATAATGAACCACATTCGCCGTCATCAGTCATCCTTGGTATTTTTTACCTGTGGAAACCCTCTTGATTCTTACCATTGCAAAGACTGCGATTTTCAAACCGAACTAACGTTGCCTTTCAAGCGACATATTAAAGACCGTCACGGAATAAAACAAGAAAACAATGACGATTTAAGTGTACAAGATAACATTCAAAAGTACGTTTGTGGAAAGTGCGGCTTTGAGACGCATTTTTCGCTTAAATGGTTACGTCACATGAGAGAGTGTCCTTACAAAACTAAAGAACAACCAAATTTGAAACAGCATATTCAGCGGCATCGTGGAGATGAAAAAGACATCAGGTGGTACAAGTGTGAAAATTGCGAATACAAAAACAAATATCGCTCATCATTAAACAGACACATAAAAATGCGGCATTTAAACAAAGGGCATCAATGCCCTGTGTGTCCTTACAGGACCCTAGGCAAAGCCGATTTGAAAAAGCACATTAACGCACGGCATGTGGACGACCTCGACGCCAAATGGTACGAATGTGAACAATGCTCATATAGATGTAAACGCAAGACATATTTGACGAGACACGTGAACTTTTTTCATATGGATGAAAAGGACGCCAAATGGTATGAATGCGAACATTGTCCATACAAGACTAGATATAGTTCGAACTTTAAGAAACACGTGGAAAGCCAGCATTTTAGTGGGAAAAGTATCACGTGGTATCACTGCACCAAGTGTTCATTTAAAACAAAACACGAGGGGGTTTTACAGAAACACGTGGACGCGTCGCGTTTGAACGAACACGACATGAATTGGTACGATTGTGAACAATATGAAAAGGACGCCAAGTGGTACGAATGCCAACATTGTCCATACAAGACTAGAGATCGGTCGAATTTAACGAGACACGTGAACGGGCGGCATTTGAATGAGGAAAGTATCACGTGGTATCAGTGCAAGGAGTGTCAATTTAAAACCAAATATAGCAATAGTTTACAGAAGCACGTGAATGCGCGGCATTTGAGAGGCGAAGATATCACGTGGTATCAGTGCGAGGAGTGTCCATTTAAATCAAAACACGTGGTGCTTTTACGTAAACACGTGAATGTGCGACATTTGGACGGAGACAGTATCAAATGGTACGACTGTGACAAGTGCCAATACAAAGCCCAGTATCTCTCATCTTTAAAGAAACACATAAATGCGCGACATTTGGACAAAGACGAAATCAAGTGGCACCAGTGCAATGAGTGTTCCTTCAGGAGCAAAGCAAAAAGCAGTTTGAAAACTCACATTAACGTACGACATCTGGACGACCAGAACGCGAAATGGTACGAATGCAAACAGTGCCCATTTAAAAATAAATGTTACAAATCTCTAACCAAACACGTGAACGCTTGTCATGTGGACGAAAAGGACCGCAAGTGGTACGAATGCCAGCAGTGTCCATACAAGTCTAGAGATAGTTCGACTTTAAGAAGGCACGTGAGAACCCGTCATTCGAATTTAAAACAAAACGAACAAATAAAGTATAAGGTGACACAAAATGCAATAGAGATTAAACATTTAGTTGAAAATGATATTAAGGTATAA
- Protein Sequence
- METLEYSVAYMAHKKSSLIMNHIRRHQSSLVFFTCGNPLDSYHCKDCDFQTELTLPFKRHIKDRHGIKQENNDDLSVQDNIQKYVCGKCGFETHFSLKWLRHMRECPYKTKEQPNLKQHIQRHRGDEKDIRWYKCENCEYKNKYRSSLNRHIKMRHLNKGHQCPVCPYRTLGKADLKKHINARHVDDLDAKWYECEQCSYRCKRKTYLTRHVNFFHMDEKDAKWYECEHCPYKTRYSSNFKKHVESQHFSGKSITWYHCTKCSFKTKHEGVLQKHVDASRLNEHDMNWYDCEQYEKDAKWYECQHCPYKTRDRSNLTRHVNGRHLNEESITWYQCKECQFKTKYSNSLQKHVNARHLRGEDITWYQCEECPFKSKHVVLLRKHVNVRHLDGDSIKWYDCDKCQYKAQYLSSLKKHINARHLDKDEIKWHQCNECSFRSKAKSSLKTHINVRHLDDQNAKWYECKQCPFKNKCYKSLTKHVNACHVDEKDRKWYECQQCPYKSRDSSTLRRHVRTRHSNLKQNEQIKYKVTQNAIEIKHLVENDIKV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -