Zmor039146.1
Basic Information
- Insect
- Zophobas morio
- Gene Symbol
- -
- Assembly
- GCA_027724725.1
- Location
- JALNTZ010000005.1:8525031-8531379[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 1 61 5.5 3.6 1 23 61 84 61 84 0.96 2 22 4.7 2.8e+02 3.4 0.5 1 20 102 121 102 123 0.89 3 22 0.048 2.9 9.7 5.2 1 23 149 172 149 172 0.93 4 22 0.44 27 6.6 5.0 2 23 182 204 181 204 0.95 5 22 2.2 1.3e+02 4.4 3.8 1 23 212 235 212 235 0.93 6 22 0.00028 0.017 16.7 1.3 2 23 242 264 241 264 0.96 7 22 0.42 25 6.7 0.8 2 23 271 293 270 293 0.94 8 22 0.3 18 7.2 2.8 2 23 303 325 302 325 0.93 9 22 0.1 6.1 8.7 2.1 1 23 331 354 331 354 0.98 10 22 0.00015 0.0087 17.6 2.6 1 23 363 386 363 386 0.96 11 22 0.11 6.7 8.5 2.7 1 21 393 413 393 416 0.95 12 22 0.44 27 6.6 2.7 1 23 488 511 488 511 0.89 13 22 0.34 20 7.0 4.4 2 23 521 543 520 543 0.96 14 22 0.052 3.1 9.6 1.4 1 23 551 574 551 574 0.95 15 22 0.0022 0.13 13.9 3.0 1 23 580 603 580 603 0.95 16 22 0.033 2 10.2 2.7 1 23 641 664 641 664 0.98 17 22 0.015 0.89 11.3 3.6 1 23 673 696 673 696 0.97 18 22 0.31 19 7.1 2.9 1 21 703 723 703 726 0.95 19 22 0.0006 0.036 15.7 3.0 3 23 737 758 735 758 0.96 20 22 0.063 3.8 9.3 0.5 1 23 764 787 764 787 0.97 21 22 4.5e-05 0.0027 19.2 1.2 1 23 796 819 796 819 0.97 22 22 0.041 2.5 9.9 3.0 1 23 825 848 825 848 0.98
Sequence Information
- Coding Sequence
- ATGAAGAATAACACGATTATCCACTCTGAAAAGGTTTACAACATGAAATCTTTATCCAATATAGTTCATAAATGCCAGATGTGTTCGTACTTTACAACACTACTGCTTTTTATGGAGAGTCATTCCAAACGCAATCATTCCATAATGCTACATTTCAGCTGTGATGACAATGTGGAAACTTATCGCTGTCGTGACTGCAACTTCCAGACAGATTTTATTGTCACTTTGAAGAAACACATTAAAGAGTGTCATCCAAGTGAAAAAAACAACTTCCAGTCAGATACCAGTTACAGTATTCAGAATTACAGTTGTAAAAATTGCGATCTCGAAACCCATTCTTCGATTAAATTTCTTCAGCACACCGCAGTTTGTCAAAAGGCTCGGCAACAAACCACCAAATTAAAATTACGCAGAACTGGAACACATTCACAAAAAAATTGTTGGTATCCATGTGAAAAATGTACTCACAAGAGCAAAACGCTATACCATTTAAGAAAACACATCTACGCCAAACACACAGACGAAAACGACATCAAATGGCAGAAGTGTGGTCATTGTTCATTCATGGCAAAAACCCCAGAACATTTAAAAGTTCATGTAAAGCACCAACATTTGGGTGATAAAACGCAGTGGTATCACTGTGACAAATGCCCCCACAGAACCAAATATAAACAGGGAATGAAAATACACGTGACAAATGTACACAGTGAAGAAAAACCAGTACAGTGTGAAAAGTGTTCACGCACTTTTAAGAATGAGACTGGATTAAGAAGTCACACGCGTCTCATGCACATGGAAATGCAAGGCCTCAGGTGTGAGAAGTGTCCCTACAGGACATTACGTACAAGGAATTTAAAAGCTCATGTAATTAGCAAACATTTGGATGAAAGTCAGATTGAGTGGCAGCAATGTGAACAATGTCCACACAAAACTAAAACCACATGGCTTTTAAAACAGCACATACATGATGTACATCAAGATGGTAAGAAATATCGCTGTGATCGCTGTACATTTAAATCGCGTAGTTCGTTGAAATTAGCAAACCATATAAACACCAAACATGCACAGGGCAGTGAAGTTAAGTGGTATCAGTGCACAAAGTGTTCTCAAAAATATAAATCTAACCCAAGTTTAAAACGGCACATGAGCTTGCAGCATGAAGAATTCCGAGGAAAATATCAGTGTGAACAATGTGGTTTTAAGTCATCTAGTCCACAACGTTTAAAAGACCATATAAATTGCAAACATACGAATTTTATCGTCACTTTGAAGAAACAGATTAAAGAGTGTCGCCCAAGTGGAAAAAACAACCTCCAGCCAGATATCAATTACAGTATTCAGAACTACAGTTGTAAAAACTGTGATTTCGAAACCTATACCTCAATTAAACTTCCTCAGCACACTACAGCTTGTCAAGATGCTCAGCAACGAACTGGAAAACCTTTACAGAACATTTTCTGGCATCCATGTGAAAAATGTACTTACAAAGGCAGATTAAAAAGCTATTTAAAAAAACACGTCTACGCCAAACACACAGACGAAAAGGACATCAAATGGCAGAAGTGTGATCATTGTTCATATGTGACAATCACCTTAGAACGATTAAGAACACATATAAAGCACAAACATTTCGGTGATAAAACCCAGTGGTATTATTGTAATAAATGCCCGTACAAAACCAAATATAAACAGGGAATAAGAGTACACATGACAAATGTACACGATGACAATAAACCATTCCAATGTGAAAAGTGTTCGCGCACTTTTAAAAATATAAACCGCTTGAGAAGACACACAATTAACAAACACTTGGACGAGAACCAGACTCAGTGGCATGAATGTGAGCAATATCCATACAAAGCTAAAACCAAGTCGACCTTGTTACAACACGTAAATGATATACATAAAGATGGTAAAAAATATCGTTGTGATCACTGTACATATAAATCACGTAGTTCGCTCGAAGTAGAAGACCATATGAACACTAAACATTCACAGGGCAGTGAAGTTAAGTGGTATCAGTGCACAAAATGTCCTCAAAAATATAAAACTAAAGGAGGTTTAAGCTGTCACTTGCGCATGCAGCATGAAGGATTCCGTGGGAAGTATCAGTGTGAACAATGTGATTTTAAGTCAGGTAGTTCGCAAAGTTTAAAAGACCATATAAACTGCAAACATTTAAGTGACAGTGAAGCTGAGTGGTACTGGTGTGAAAAATGCCCATTTAAATATAAAACTAAATCGTCTTTGACACACCACATGCAAGAGAAACATCTGAGCGGGAACAGGTATCAGTGCGACCAGTGTGGTTATAATGCAGGTAAATCGCAACGTTTAAAAGACCATATAAATAGCAAACATTTAAGTAACACTGAAGTTGAGTGGTACCAGTGTGAAGAATGTCCACTTAAATATAAAACTAAATCGTCTTGGAGACAACACATGAACTTGAAACATCCAAGTGGTAACAAGTATCAGTGTGATCAGTGTGATTATAAGGCGAATTATTCGCAGTGTTTGAAAGACCATATAAATAGCAAACATTTGTTTGACACTGAAGCTGAGTGGTATAAGTGTGAATAA
- Protein Sequence
- MKNNTIIHSEKVYNMKSLSNIVHKCQMCSYFTTLLLFMESHSKRNHSIMLHFSCDDNVETYRCRDCNFQTDFIVTLKKHIKECHPSEKNNFQSDTSYSIQNYSCKNCDLETHSSIKFLQHTAVCQKARQQTTKLKLRRTGTHSQKNCWYPCEKCTHKSKTLYHLRKHIYAKHTDENDIKWQKCGHCSFMAKTPEHLKVHVKHQHLGDKTQWYHCDKCPHRTKYKQGMKIHVTNVHSEEKPVQCEKCSRTFKNETGLRSHTRLMHMEMQGLRCEKCPYRTLRTRNLKAHVISKHLDESQIEWQQCEQCPHKTKTTWLLKQHIHDVHQDGKKYRCDRCTFKSRSSLKLANHINTKHAQGSEVKWYQCTKCSQKYKSNPSLKRHMSLQHEEFRGKYQCEQCGFKSSSPQRLKDHINCKHTNFIVTLKKQIKECRPSGKNNLQPDINYSIQNYSCKNCDFETYTSIKLPQHTTACQDAQQRTGKPLQNIFWHPCEKCTYKGRLKSYLKKHVYAKHTDEKDIKWQKCDHCSYVTITLERLRTHIKHKHFGDKTQWYYCNKCPYKTKYKQGIRVHMTNVHDDNKPFQCEKCSRTFKNINRLRRHTINKHLDENQTQWHECEQYPYKAKTKSTLLQHVNDIHKDGKKYRCDHCTYKSRSSLEVEDHMNTKHSQGSEVKWYQCTKCPQKYKTKGGLSCHLRMQHEGFRGKYQCEQCDFKSGSSQSLKDHINCKHLSDSEAEWYWCEKCPFKYKTKSSLTHHMQEKHLSGNRYQCDQCGYNAGKSQRLKDHINSKHLSNTEVEWYQCEECPLKYKTKSSWRQHMNLKHPSGNKYQCDQCDYKANYSQCLKDHINSKHLFDTEAEWYKCE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -