Zmor009085.1
Basic Information
- Insect
- Zophobas morio
- Gene Symbol
- -
- Assembly
- GCA_027724725.1
- Location
- JALNTZ010000004.1:55233001-55235259[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 1.3 77 5.2 2.7 1 23 21 43 21 43 0.97 2 19 0.0083 0.5 12.1 6.4 1 23 141 164 141 164 0.93 3 19 0.13 7.6 8.4 2.9 1 23 173 195 173 195 0.98 4 19 4.9e-05 0.0029 19.1 0.5 1 23 222 245 222 245 0.98 5 19 0.082 4.9 8.9 1.9 1 23 254 276 254 277 0.94 6 19 0.61 37 6.2 7.5 1 23 286 308 286 309 0.95 7 19 0.095 5.7 8.7 2.7 1 23 318 341 318 341 0.95 8 19 0.0016 0.097 14.3 2.4 1 23 349 372 349 372 0.98 9 19 0.24 14 7.5 2.7 1 23 412 435 412 435 0.98 10 19 4.5 2.7e+02 3.5 0.9 2 20 445 463 444 465 0.93 11 19 4.5 2.7e+02 3.5 0.2 11 23 476 488 472 489 0.82 12 19 0.00024 0.015 16.9 1.1 1 23 498 521 498 521 0.98 13 19 0.19 12 7.8 4.8 1 23 530 552 530 553 0.95 14 19 0.0081 0.48 12.1 2.6 1 23 562 585 562 585 0.97 15 19 0.017 1 11.1 6.4 1 23 594 616 594 617 0.96 16 19 3e-05 0.0018 19.7 1.8 1 23 626 648 626 649 0.96 17 19 0.0013 0.078 14.6 0.4 1 23 658 681 658 681 0.97 18 19 4.9e-05 0.003 19.1 1.0 1 23 690 712 690 713 0.96 19 19 0.04 2.4 9.9 5.5 1 23 722 745 722 745 0.98
Sequence Information
- Coding Sequence
- ATGTCGCTACTAAAATACTCGAAAAAGCTCGCCCACATGAAGCCTTCCCCGAACAATGTCCACCGCTGTAAGGTTTGTCCGTATTTCACAACCTCATTTTTGCTCATGGTGAACCACGTTAAACGCCACTGGACGCCCCCACAAAATTTCAACTGTGAAAATATCGACATTGAAACTTACCATTGTGAGGACTGCAACTTCCAAACAGAACTAACACTTCTTTTCAAGCAGCACGCCCGACAGTGTTATAGGAAGTCTGAAGAGAATTTACCAGAGCAAGTTTACTCAACTCAAAGTTTCATTTGCAAGAAGTGCAGTTTTGAAACACATTTCAAGCTTAAGGGGCTTCAACACGCTACACAGTGTTTGGGGAGCAATAACTTTCAAATAGTAACACCTAATGGTAAAATTACCATATGGTATCACTGCGACCAGTGTGAATGCAGATTCAAAAGAAAACAAAACTTGAAGGCACACAAGATTTTAAAACATTTGAGTCATGATCAACATAGGTGGTATTATTGTGGACATTGCTCCTATAAAACCATTTTGAAATCGCGTTTAAAAGTACATGTAATGAGGCATGTGAACAAACCAAAGAGTCAGATTTCTTTAAAAACTCCCGGTGTTGTGGAGTATGTGGATGAGCAGAGTATTAAATGGTATAAATGTGAAAAGTGTCCGTATAGAACTAAAGTCAAGGGGAATTTAATCAAGCATATAAATTCCGTGCACTTAGATGAGAAGGATATTACATGGCACGAGTGCCAGACTTGTCCATACAAAGGTAAAAATTTGTTGGCTTTAAAGAGACACATTATTCTACATCATTCAAAAGATAAGGATGTTACATGGCATAAATGCCAAAACTGTCAATATAAGACTAAATATCATAGAGCACTAAAGGAGCATATAAATGCGCATCATTTAGATGAACAAGATATTAAGTGGCACGAATGTGGAGAGTGTTTGTATAAAACCAAATATAAAAACAACTTGTCTCGTCACAAACTTGTATCACACCCTACTGAAGACGGTAAGTGGTATGAATGTAAAAAATGCCCATTCAAAACACAACATAAGCCCAATTTAAAACAGCACATCAAGGTGGTCCACGTGAACGAAGAGAATATTAAATGGCACAGATGTAAAAATTGTTCATTCAAAACTAAGTATAAACTTGCCATTCAAAAACATGTACTATTTCACAAAAATGAAGAAGATATTAAATGGTACGAATGCCAAATTTGCTATTTTAATACTAAACATGTGGGGTCTTTCAAAACTCACCTAATTACCCAACACGGATGTGAAGAAAATATTAAATGGTTAAAATGTGACCGATGTCTACAACAAACCGAAAGCAATACACATTTTCAACAACATTTAAGTGCACAAGATATAGAATGTGTGCCATATAAAACCGAAGACTTATCGACGCTAAATAGTCACATTAAAGTACACCACTTGGACAAAAAAGATACTAAGTGGTATAAATGTGATCAATGTGATTACAAAGCAAAGCAACGCAGTGGCTTGAAAATTCATATCAATAGGCGACATACACATCCCCGCGATATTAAATGGTACGAATGTAAAGTTTGCCCCTACAAAACCAAATGTGACAGCAATTTAAAGCGTCACGTAAACCTACACCACTTAAAAGATGAAGATATTAAATGGTACGAATGCAAAATTTGCAATTTTAGAACTAAACATGTGGGGTCTCTCAAAAGTCACACAATTACCCAGCACGGATCTAAAGAAAATATTAAATGGTTTAAATGTGCCCAATGTCCACATAAAGCTAAAAATAAGACGCATTTAAAAAAACATATAAATGCTCACCATTTAAGTGCACAAGATATAGAATGGTTCCAATGTACCGAGTGTCCATATAAAGCCAAAGACTCGTCGACGCTAAATAGGCACATTAAAGTACACCACTTGGACGAGAAAAGTATTAAGTGGTATGAATGTGATAAATGTGATTATAAATCAAAAGAAAAACCTGGCTTGCAACGTCACATCATTAGGCTACATACAAATCCACTCGATATTAAATGGTACGAATGTGAAGTTTGCCCCTACAAAGCCAAAACTAACGGGAATTTAAAGCGTCACATAAACAACCACCACTTAAAGGATGAAGATGTTAAATGGTACGAATGCCAGATTTGCTATTTTAAAACTAAACATTCGGGGTCTTTCAAAACTCACTTAAAAACCAAACACGGATGTGAGAGAAATATGAAATGA
- Protein Sequence
- MSLLKYSKKLAHMKPSPNNVHRCKVCPYFTTSFLLMVNHVKRHWTPPQNFNCENIDIETYHCEDCNFQTELTLLFKQHARQCYRKSEENLPEQVYSTQSFICKKCSFETHFKLKGLQHATQCLGSNNFQIVTPNGKITIWYHCDQCECRFKRKQNLKAHKILKHLSHDQHRWYYCGHCSYKTILKSRLKVHVMRHVNKPKSQISLKTPGVVEYVDEQSIKWYKCEKCPYRTKVKGNLIKHINSVHLDEKDITWHECQTCPYKGKNLLALKRHIILHHSKDKDVTWHKCQNCQYKTKYHRALKEHINAHHLDEQDIKWHECGECLYKTKYKNNLSRHKLVSHPTEDGKWYECKKCPFKTQHKPNLKQHIKVVHVNEENIKWHRCKNCSFKTKYKLAIQKHVLFHKNEEDIKWYECQICYFNTKHVGSFKTHLITQHGCEENIKWLKCDRCLQQTESNTHFQQHLSAQDIECVPYKTEDLSTLNSHIKVHHLDKKDTKWYKCDQCDYKAKQRSGLKIHINRRHTHPRDIKWYECKVCPYKTKCDSNLKRHVNLHHLKDEDIKWYECKICNFRTKHVGSLKSHTITQHGSKENIKWFKCAQCPHKAKNKTHLKKHINAHHLSAQDIEWFQCTECPYKAKDSSTLNRHIKVHHLDEKSIKWYECDKCDYKSKEKPGLQRHIIRLHTNPLDIKWYECEVCPYKAKTNGNLKRHINNHHLKDEDVKWYECQICYFKTKHSGSFKTHLKTKHGCERNMK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -