Zmor039128.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Zophobas morio
Gene Symbol
-
Assembly
GCA_027724725.1
Location
JALNTZ010000005.1:8470550-8472316[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.03 1.8 10.3 2.3 1 23 13 35 13 36 0.94
2 16 6.6 3.9e+02 3.0 3.8 1 23 52 74 52 74 0.96
3 16 0.36 21 6.9 3.3 2 23 116 138 115 138 0.95
4 16 0.0024 0.14 13.8 1.8 1 23 179 201 179 202 0.96
5 16 0.00019 0.011 17.3 1.2 1 23 211 233 211 234 0.96
6 16 0.0011 0.065 14.9 0.7 1 23 243 266 243 266 0.97
7 16 0.025 1.5 10.6 1.5 1 23 275 298 275 298 0.95
8 16 0.011 0.66 11.7 1.6 1 23 307 330 307 330 0.96
9 16 0.0089 0.54 12.0 2.0 1 23 339 361 339 362 0.96
10 16 0.00023 0.014 17.0 1.8 1 23 371 394 371 394 0.96
11 16 0.00068 0.041 15.5 3.7 1 23 403 425 403 426 0.95
12 16 0.059 3.6 9.4 4.5 1 23 434 457 434 457 0.95
13 16 0.12 7.3 8.4 5.6 3 23 468 489 466 489 0.95
14 16 0.0021 0.13 14.0 1.7 1 23 498 521 498 521 0.97
15 16 0.00049 0.029 16.0 1.8 1 23 530 552 530 553 0.95
16 16 0.093 5.6 8.8 4.3 1 23 562 584 562 585 0.95

Sequence Information

Coding Sequence
ATGTCCTGTGGGTTAGTGGAAGCCCCCATCAAAATCCACGACTGTAAAGTGTGCCCCTACGTCACGTCGTCCCCTTTTCTCATGCTCAACCACGTCAAGCGTCACCACTCAACTCTAACCCCATTCAACTGCGAAAATGCGACCATTGAAACCTACTTCTGCAAGGAATGTGACTTCCATACGGAACTGACAATCACTTTCAAACAACATGTACAACGTCACACTATTGTAAAACAACCTTTATCAAAGGAGGAATACACCATTAAGAATTTTATTTGTGAAAAGTGCAACTTTGAAACCCACTTTTTGATCAAGTGGCTGCGACACACCATCACGTGCGACAATAAATGTGACCAGTGCGCTTATAAAGGTAAATACAAACACGACTTAAGAAGACACAAAATCATGAAACATTTAACCGAAAACGAAATACGTTGGTACCACTGCGACAAGTGTCCATACAAATCTAAACTGAAGTGTCGCTTAAAGTCGCACGTTTACAATCAACACACTGATGACACCAACATCAAATGGTACGAATGCCAAAACTGCCCCTTTAAAACCAAGCAAGTAATCAATTTACGAAAGCACATAATTTCGCACCATTTGGACGAAACGGAGGTCCAGTGGTACGAATGCAAGGACTGCCCATACAAAGCCAAACAAATCGTTAATTTAAAAAGCCACATAAACACGCACCATTTGGACGACAAGGACGTGAAATGGTACGAATGCAAAGACTGTCCATACAAAGCGCGAAAACTCGCGTATTTAAAAAACCACATAAATTCGCGCCATAAGGACGAAAAGGACGTGAAGTGGCACGAATGCGACCAATGCTCCTACAAAGCCAAAGAAAGCTCCACGCTGAAAAACCACATAAACGCGCGCCATCTAGACGAAAAAGACGCCAAGTGGTACAAATGTGACACATGCTCGTACAAAGCTAAATACAAAGCGTCGTTAAACAGCCACTTGAATTTGTACCATTTAGACGACAAAGAAGTGCAGTGGTACGAATGCAAAGAATGCCCGTTCAAAACCAAAGTAAAAATGACTTTGAGAGGACATATAAACTCGCACCATTTGGACGCCCAACACATTAAATGGTACCAATGTAAAGACTGCCCTTACAAAACCAAATTCCGGTCAAGCCTAAAAATGCATATAAACGCGCGCCATTTGGACGAACAACACGTTAAATGGTACGCGTGCCAACACTGCCCATACAAAGCTAAACAAAATACCAATTTAAAAAAACACATAAGCATTCACCATTTGGACGCGCAGGGGGTTTGGCACGAGTGTAAGCAATGCCCGTTCAAAACCAAAGTAAAATGCCAGTTGGAGCGGCACATTAACGGGTACCATTTAGACGAGAAGGACATCAGGTGGCATTTATGTGAAAAGTGTTCGTATAAAACTAAGGAAAAACACTTATTGAATAGACATATTACCACTCAACATTTGGATTTGGAGGATATTAAATGGTACGAATGCCAGCAGTGCCCATACAAAGCTAAACTGAAATATAGCTTGAAAAAGCACATGATCAGGCGACATTTTGAGGAGCGGGACATCAAGTGGTTCGAGTGCCAGATGTGTTCGTACAAAGCTAAAGACAATTCGAACTTAAAAAGTCACATAAATGCGCACCATTTAGACGAGAAGGACATGAAGTGGTACGAGTGTGTAATGTGCCCGTATAAAGCTAAACAAAACTGCCAGTTAAAAAATCACGTAACGAAGCACCATTTAAACGTTTAG
Protein Sequence
MSCGLVEAPIKIHDCKVCPYVTSSPFLMLNHVKRHHSTLTPFNCENATIETYFCKECDFHTELTITFKQHVQRHTIVKQPLSKEEYTIKNFICEKCNFETHFLIKWLRHTITCDNKCDQCAYKGKYKHDLRRHKIMKHLTENEIRWYHCDKCPYKSKLKCRLKSHVYNQHTDDTNIKWYECQNCPFKTKQVINLRKHIISHHLDETEVQWYECKDCPYKAKQIVNLKSHINTHHLDDKDVKWYECKDCPYKARKLAYLKNHINSRHKDEKDVKWHECDQCSYKAKESSTLKNHINARHLDEKDAKWYKCDTCSYKAKYKASLNSHLNLYHLDDKEVQWYECKECPFKTKVKMTLRGHINSHHLDAQHIKWYQCKDCPYKTKFRSSLKMHINARHLDEQHVKWYACQHCPYKAKQNTNLKKHISIHHLDAQGVWHECKQCPFKTKVKCQLERHINGYHLDEKDIRWHLCEKCSYKTKEKHLLNRHITTQHLDLEDIKWYECQQCPYKAKLKYSLKKHMIRRHFEERDIKWFECQMCSYKAKDNSNLKSHINAHHLDEKDMKWYECVMCPYKAKQNCQLKNHVTKHHLNV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-