Zmor026257.1
Basic Information
- Insect
- Zophobas morio
- Gene Symbol
- -
- Assembly
- GCA_027724725.1
- Location
- JALNTZ010000009.1:5968427-5969971[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.028 1.7 10.4 1.7 1 23 165 186 165 186 0.96 2 11 0.9 54 5.7 0.3 1 23 228 249 228 249 0.90 3 11 7.8e-05 0.0047 18.5 4.3 1 23 255 277 255 277 0.97 4 11 0.0086 0.51 12.0 4.2 1 23 283 305 283 305 0.98 5 11 0.00015 0.0088 17.6 4.0 1 23 312 334 312 334 0.97 6 11 0.0013 0.079 14.6 7.4 1 21 347 367 347 368 0.93 7 11 9.5e-05 0.0057 18.2 3.3 1 23 378 401 378 401 0.96 8 11 6.4 3.9e+02 3.0 1.0 3 23 410 427 408 427 0.72 9 11 4.4e-06 0.00026 22.4 0.9 1 23 433 455 433 455 0.98 10 11 1.2e-05 0.00074 21.0 0.1 1 23 461 483 461 483 0.98 11 11 7.4e-05 0.0044 18.5 1.0 1 23 489 511 489 511 0.96
Sequence Information
- Coding Sequence
- ATGAGTCTCATCAAAGGCTCCATAACCCCCGAAAACCTCCAGAAAATATGCAAACTATGCCTCGAAGAAAAACACGCAATTTTAAACCTCGACACCATAATAGAATTCAAAGAATTCGGCATTTCTTCCTATAGCGTAGCCGAAATCTTAACACGAGTCACCAACCAAAAGGTAAACTCACCGATAACCCCACCCCCGACTTTAAACCCACCTTTCCAGCCCCTCTCTGACGACTTCGCCCCAACGATAATCTGCAACGACTGCCTCGGAGACCTCAAAACCGCCTACATCCTCCTACTCCGCTACGAAGAAGCCAACAAAATCCTCCAGGACTTCCTCACCAACTACGTGAAGAAAGAAATCGACAGCGACGACAACCACCAAGACGTAGCCCCCTTAGAAACCCGAAAAACCCGCCACATTAAAAGGCGGCGGAAAAAGCGGCCCGAAATCGACGAAAACGAAAAAGTCTCACTCACGCGAAGTACCCAGCATTCGTGCCCCATCTGCACTAAAGACTTCACCGCGCTAGAATTAAGAGACCACGCTCACACCCATAAAGCTCTGAAAAAGTATCTCAGTATTCCCGACGAGAAGAAAGTCACCGCGACCACGAAGTTTTCAACGCGAAGACACTTAACCAACCCCCAGGTGACCATCTTCGAACGGCCTGTTAAACTCCACAAATGCCCCTACTGCAACGTGGAGCTTCCGGTGGACGAATTCCGCGTCCACATAGACACCCACCGCAAGCAATGTGAATACAAATGTGATAAGTGTGAGCGCGTTTTTAAGAGACTGAACCACTTGAACACCCATCGGGTCAAACACTTGAAAGAATTCCCTTATAAGTGTGAGCATTGTGGGAAAGGTTTTGTGATTAAAACCAACTACGACTGCCATATGTTGACGCACACTAGTGACGAGTTGCCCCACGAGTGTCGCTTTTGTTTGAAAAGATTCTCGAATCCGGAGCACCTCAACCGCCACCAAATTATTCACACTGAAAATGTGTCCTACTCAGTGAAGTACCGAGTGTGTAAGTGCCACCACTGCCTCAAAAGCTTCAAAGACAAGGAGGAACTCAAATCCCACATTTGTGTCCCGGTTGAGCAAACCGTCAACACTCGCTACCCTTGCAAAACTTGTAAAAAAGTCTTCAAGCATTCAAGCGGTTTGTACAACCACAACCGCAACATCCACAAACTCAAAGGAAGCAAAACCTTGTGTTCGGTTTGTGGGAAGTACGTGTCGAATATTTACAACCACATGATGCGCCATTCGGGGGAAAAACCGTACCAGTGCAACCAGTGCGAAAAGCGATTTATTTCGAAGCCACAACTCAAACAACACTTGTTAGTGCATTCAGGGCTTAAACCCTACGTTTGTAGCGTGTGCGCGAAGGCTTTTAATAATTTGTACAACCTGCAAGTGCACGAGAGGATACACAAAGGCGATCGGTGTCATATTTGTACAATTTGCGGTAAAGGCTTCTTGGAGAAGTCATACCTGAAAAAACATATGATTGTGCATGCTAAAAGTTAG
- Protein Sequence
- MSLIKGSITPENLQKICKLCLEEKHAILNLDTIIEFKEFGISSYSVAEILTRVTNQKVNSPITPPPTLNPPFQPLSDDFAPTIICNDCLGDLKTAYILLLRYEEANKILQDFLTNYVKKEIDSDDNHQDVAPLETRKTRHIKRRRKKRPEIDENEKVSLTRSTQHSCPICTKDFTALELRDHAHTHKALKKYLSIPDEKKVTATTKFSTRRHLTNPQVTIFERPVKLHKCPYCNVELPVDEFRVHIDTHRKQCEYKCDKCERVFKRLNHLNTHRVKHLKEFPYKCEHCGKGFVIKTNYDCHMLTHTSDELPHECRFCLKRFSNPEHLNRHQIIHTENVSYSVKYRVCKCHHCLKSFKDKEELKSHICVPVEQTVNTRYPCKTCKKVFKHSSGLYNHNRNIHKLKGSKTLCSVCGKYVSNIYNHMMRHSGEKPYQCNQCEKRFISKPQLKQHLLVHSGLKPYVCSVCAKAFNNLYNLQVHERIHKGDRCHICTICGKGFLEKSYLKKHMIVHAKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -