Zmor038421.1
Basic Information
- Insect
- Zophobas morio
- Gene Symbol
- -
- Assembly
- GCA_027724725.1
- Location
- JALNTZ010000005.1:808750-812064[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 26 3 1.8e+02 4.0 3.8 1 23 27 49 27 49 0.96 2 26 4.6 2.8e+02 3.4 4.4 1 23 66 88 66 89 0.94 3 26 0.33 20 7.1 3.3 1 23 134 157 134 157 0.94 4 26 0.11 6.9 8.5 3.5 1 23 162 185 162 185 0.94 5 26 0.0025 0.15 13.7 2.2 1 23 194 217 194 217 0.96 6 26 0.12 7 8.5 6.2 1 23 226 249 226 249 0.96 7 26 0.15 9.2 8.1 2.4 1 23 256 278 256 278 0.95 8 26 0.81 49 5.8 6.0 1 23 285 308 285 308 0.97 9 26 0.00053 0.032 15.8 4.0 1 23 317 340 317 340 0.97 10 26 0.0016 0.095 14.4 3.1 1 23 349 371 349 371 0.98 11 26 1.1 64 5.5 0.8 1 21 379 399 379 400 0.95 12 26 0.33 20 7.1 1.4 1 23 424 446 424 446 0.96 13 26 2.1 1.2e+02 4.5 1.9 1 23 461 483 461 484 0.92 14 26 0.12 7.4 8.4 0.8 3 23 527 547 525 547 0.97 15 26 0.0015 0.088 14.5 1.3 1 23 563 586 563 586 0.97 16 26 0.44 27 6.7 4.4 2 23 593 615 592 615 0.95 17 26 0.0018 0.11 14.2 0.3 1 23 626 649 626 649 0.97 18 26 0.084 5.1 8.9 3.3 1 23 658 681 658 681 0.97 19 26 0.022 1.3 10.8 4.7 1 23 690 713 690 713 0.95 20 26 0.0067 0.4 12.4 3.7 1 23 722 745 722 745 0.98 21 26 0.03 1.8 10.3 0.9 1 23 784 807 784 807 0.92 22 26 0.0064 0.38 12.4 0.4 3 23 818 839 816 839 0.96 23 26 0.00045 0.027 16.1 1.1 1 23 848 871 848 871 0.98 24 26 0.002 0.12 14.1 0.8 1 23 878 900 878 900 0.98 25 26 0.032 1.9 10.2 3.5 1 23 906 928 906 929 0.95 26 26 7.7e-05 0.0046 18.5 1.4 1 23 938 961 938 961 0.98
Sequence Information
- Coding Sequence
- ATGTCGCTTCAAAAAGGGTCAAGCTTGGACTACTCTGAAGCACTCAAAACGCATGGAAGATCTTCATGGAAAAACGTCCACAATTGTAAACAATGCCCATACTTTACTACGTCGTTTTTTCTTATGGTGAACCACGTGAAGCGACACCGTTCATTTTTGGAAAAATTTACTTGTGAAAACGGCGAAATTGAAACTTACCATTGTAAAGACTGCGATTTTAAAACGGAATTAACGATTCTGTTCAAACAACACATTAATGAACATCACGGTCTTAAGAGAGATGATTTATCAAGCTTACGGAGCTACGTTTGCGAAAAGTGCGACTTTGAAACAAACCTGGTGTTGAAGTGGCTTCAGCACACTTCAGTATGCATCAGAAGAGGGAAAAATGTCCAACGGTATTCCTGTGTGGAATGTTCGTATACGGCTAGCCACAAAACATATTTCAACAAACATACGGCAAATCGCCATTTGAACAAGCGGTTTGCTTGTGACAAGTGTTCATATGAATGTAGATACGAATCAGGTTTAAAACACCACGTAAATCTTAACCATCTAGATGATGAAGATGGTGAATGGCACAAGTGTGAACAATGTCCTTATAAAACTAGAGTCAAATGGAGTCTAAAAAGACACATCAACAACTTACACTTGAATGAAAAAGAAATCGAGTGGCACCGATGTAATCAATGTCCGTTTAAAACCAAGACAAAATGTGGTTTAAAAAAACACGTTAATTCGTTACATTTGGACGGAGTTAAGTGGTTTGAATGTTCAAGCTGTTCGTATAAAAGTAAAAGAAAAGATAAATTAAAATTGCATGAATCGCTCCACCAGTTGGATATCAAGTCGTTTCAGTGCGAGTATTGCGAATATAAGGCTAAATTAAAATGTTATTTAAGCGCTCATATGAAGAACTGTCATTCAGACGAAAATGATGTGAAATGGTACATGTGTGAGCACTGTCCGCATAAAACTAGACGTAAATCGGATTTAAGAGTCCACGTGAAACGGGTGCACTTGGAAAGAAAGGATGTGGAATGGTATGCGTGTGAAAAGTGTCCGTTTAAAAGCAGAATGAAACATAATTTAAAGAAGCACATAAAGGTCCATCTTACACAAAAATCAGAATGGTATGAGTGTGGGAAATGTTCGTATAAAAGTCAAATTAAAAGGTATTTACAAAAGCACCTAAAGGCAACTAAAATGTCAATTTTGGAGTACTCCGAAGCTGTCACAGCCTATGAAGAATCCTCATGGAAAAACGTCCACAACTGTGACCAGTGCCCCTATTTTACAGCGTCACGTTGGCGTTTGGTGAACCACACACGACTTCACTGTTTCCCGGTGGAAAATTTCACTTGCTTAAAAGTTGAGACTTACCTTTGTAAAGACTGTAATTTTACAACGGATTTAACGATTCTGTTTAAACAGCACATTAATGCGCATCACGGGCTTAAGAGAGAATCTGGGTACGACGCGGAGTATCACGTACAAGACTACGTTTGCGAAAAATGCGACTTCAAAACAAATTTCTCGTTGAAGTGGCTCCAACATGATTTGGTTTGTCGGTATGGTTGCAACAAGTGTCCGTATAAAACTAAATATAAAGCTAGACTGGCGTTGCATTTAAAAAATCACGCAATTTATCGTGATTGGAATGAAGAAGAAGAGGAAGTCAAGTGGTACAAGTGTGCCAACTGTCTGTATAAAACCAAACGAAAAGATAATTTAAAAGTGCACATAACTGTCCAACATTTAGATGCCAAGTGGCTTCAATGCAAACATTGCCAATTTCAAACTAAAGTGGAAACTTATCTAAAAAGGCACGTCAAGAATCGTCATTCAGTTAAAAACGATATTGATATTAAATGGTACAAGTGTGACCAGTGTCCGTATAAAATCAGCCGCAAAATTGATTTACTAAACCACATAAATCAGATACATTTGGATGAACAAGACGTCGAATGGTATACGTGTGACAAGTGCCCATTTAAATCCAGATTGAAAAATAGTTACCGAAAACACCTAAAAATCTTCCACTTGAATGAAGAAGACGTTCAATGGTACGAATGCAACGACTGTCCATTTAAAACTAGGTATAAACATTGTTTAAAGAAACACGTAAACGCAATACATTTAGAGGACGAAAAAGTCAAGTGGTATGAATGTGAACAGTGTTCATTTAAAAGCAAGCATCGATCGTATTTAAGAGACCACATAAAACGTATCCATTCCAGAGACCGAGAATCGCACATGTGTGAACTGTGTTCGTTCAAAACCAAATGCAAACGTACTTTAAAAAGACACATAAACAATTTTCACTTGAACGACGACGAAGGTAAATGGTACGAATGCGAACAATGCCCTTTTAAAACTCGAGATAATCAATATTTGAAGTCGCACGTGACTGCGAAACATCTAGACGAAGATAAAGTTAAGTGGTACGGATGTGAAAATTGTCCGTTTAGAAGTAAAAAGGCGTCGGATTTAAAACGGCACATAATTTCTCAACACGTGGATGAAAAGGAAGTTAAGTGGTATGAGTGCGAAATATGCTCTTATAGAACCAAATTGGAGTCGTATTTAAGGAAGCATATGAAGGTTAATCATTCGGGCAAACCGGAATGGTACGAATGTGCGAAGTGTTCGTATAAAAGTAGAACGAAAAATGATTTAAAATGGCATGTTAATGTACACTTGGGGATCAAATTGTATGAGTGTGAATATTGTCCATACAGGGCGAAACGCAATGATTGTTTAAAGGGTCATGTGAATTACCACCATTTGGATGGAATGGATGCCAAATGGTACAAATGTGAATACTGTCCTTACAGAATTAAAAATAAAACTTCTCTGGCCAGGCATATTAAAAAACTACATGTGTAG
- Protein Sequence
- MSLQKGSSLDYSEALKTHGRSSWKNVHNCKQCPYFTTSFFLMVNHVKRHRSFLEKFTCENGEIETYHCKDCDFKTELTILFKQHINEHHGLKRDDLSSLRSYVCEKCDFETNLVLKWLQHTSVCIRRGKNVQRYSCVECSYTASHKTYFNKHTANRHLNKRFACDKCSYECRYESGLKHHVNLNHLDDEDGEWHKCEQCPYKTRVKWSLKRHINNLHLNEKEIEWHRCNQCPFKTKTKCGLKKHVNSLHLDGVKWFECSSCSYKSKRKDKLKLHESLHQLDIKSFQCEYCEYKAKLKCYLSAHMKNCHSDENDVKWYMCEHCPHKTRRKSDLRVHVKRVHLERKDVEWYACEKCPFKSRMKHNLKKHIKVHLTQKSEWYECGKCSYKSQIKRYLQKHLKATKMSILEYSEAVTAYEESSWKNVHNCDQCPYFTASRWRLVNHTRLHCFPVENFTCLKVETYLCKDCNFTTDLTILFKQHINAHHGLKRESGYDAEYHVQDYVCEKCDFKTNFSLKWLQHDLVCRYGCNKCPYKTKYKARLALHLKNHAIYRDWNEEEEEVKWYKCANCLYKTKRKDNLKVHITVQHLDAKWLQCKHCQFQTKVETYLKRHVKNRHSVKNDIDIKWYKCDQCPYKISRKIDLLNHINQIHLDEQDVEWYTCDKCPFKSRLKNSYRKHLKIFHLNEEDVQWYECNDCPFKTRYKHCLKKHVNAIHLEDEKVKWYECEQCSFKSKHRSYLRDHIKRIHSRDRESHMCELCSFKTKCKRTLKRHINNFHLNDDEGKWYECEQCPFKTRDNQYLKSHVTAKHLDEDKVKWYGCENCPFRSKKASDLKRHIISQHVDEKEVKWYECEICSYRTKLESYLRKHMKVNHSGKPEWYECAKCSYKSRTKNDLKWHVNVHLGIKLYECEYCPYRAKRNDCLKGHVNYHHLDGMDAKWYKCEYCPYRIKNKTSLARHIKKLHV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -