Zmor036731.1
Basic Information
- Insect
- Zophobas morio
- Gene Symbol
- topi
- Assembly
- GCA_027724725.1
- Location
- JALNTZ010000006.1:28620780-28623608[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.021 1.2 10.8 1.9 2 21 96 115 95 116 0.94 2 13 8.3e-07 5e-05 24.7 0.8 1 23 141 163 141 163 0.97 3 13 0.051 3.1 9.6 3.3 2 23 170 191 170 191 0.95 4 13 0.18 11 7.9 0.3 2 13 210 221 209 228 0.88 5 13 0.0034 0.21 13.3 1.2 2 23 270 291 269 291 0.97 6 13 1 62 5.5 3.0 2 21 334 353 333 357 0.83 7 13 0.67 40 6.1 0.2 1 23 474 497 474 497 0.96 8 13 0.034 2.1 10.2 0.2 1 23 501 523 501 523 0.96 9 13 1.8e-06 0.00011 23.6 2.4 1 23 529 551 529 551 0.98 10 13 0.05 3 9.6 0.2 1 23 557 582 557 582 0.96 11 13 0.11 6.4 8.6 2.7 1 23 588 610 588 610 0.86 12 13 0.00016 0.0097 17.5 0.5 3 23 618 638 616 638 0.97 13 13 0.00091 0.055 15.1 1.7 1 23 644 667 644 667 0.98
Sequence Information
- Coding Sequence
- ATGCTCGCCGGTGATAATCGGACAATTTCTGTAATAAATACGCATTTCATAAGCGACTCTGGGAAAATTTCGTCAATGAGGTACGAAGTCGACTTGGCCGTTCACCAAATAATAAACAAGAGTCACTTCATAACCGACAAAAATGTGAGTTTTAACATCAGCGACGCGGTAATTTTTAGCCATCAGAGGCTTTTTAATGAAGATCTCGGGTCGGTGCAATTGTACAGACTGGACAATTCTCAGAATTTGGCACGGAAACCCAAGCTGAACATTCCAAACCTGATAAGGTGCCAGAACTGCGAGACGAACTACCCCACCAAATACCAGTACCAAAGGCACCAGTGCGAGTTCAACGCCGAGAAGGTGGTTCTTAAACCGAACGCCGACCTGGCGGACATCGAGAAGGGCAAACGCATCAAATATGACTGCCCCACGTGTGGTAAGCAGTTCGTGAGCAAGAACAACCTGGAGCGCCACCAAACCAGCCACGAGAGCTCCAAAGACAACACGTGCGAGCACTGCAAGAAGCAGTTCGTGAGCGAAAATCGGCTGCGAATCCACAAAGAAAACCACTGCAAGAAAGCCGGAGACATCTCCAAGTTCTACAGGAGCGACGTTACTGTCTGGAAGTGCAAAAAATGCCACGAGGTGTTCTCATCCAGCATCACTGCAGGGTATCACGTCGACCTCTGCACTGACTTGATTGACAGTTCTGACATTAAAAAAGAACCACTGAGTGACAGCAGCGGCGACCAAAACCCCAAGAATGACAAAACGATCGAGAAAATCTCGACCGAGATTCTTCTGCAGTGCGAATTCTGCAACCGGACTTACGCCGACAAGCAGATTCTCCTCAAGCACCAAAAAACTCACAAAACCGACAAAAACTACGAATGTGTGATCTGTAAAGACGTTTTCGAGTCATACATCACAGCCTCGCAGCACTGGTTGAAAAAATGCTCAGAAAAAGCCAATCTTTTCTACTTACCCAAACTGACCTACTGCGAATTCTGCGATCGTACTTTTAAGTCGCACGAGATCCTCTATACTCATAAAATCAAGAAGAAGCATTACACGCCCAAAATCCACGAAAGCGTGGTCGAGAAAACTTCAAATCCGGTCAAAGACATCAAGAGCGAAGACGTCATCGATAAGTTAATCGAGGATGTGCTGATCGCTTTGGAAATCCCGATCAACAAAAGAAAGAAGAACGTAGAGAACAAAGAAGAAATCGATAAAGAGAATGTGTGTTGCGAAACCACGAAAGTTAAAACTGAGCCTTTAAACCAGACGATTACTCAAAACGTGGAGGAACCCTCTGGAGTTCCCGAGAAAAAGAAAAGGGGCCGAAAGAGAAAATTCCCAAAGCAACAACCTAAAGCGAAGAAACCCTGCGTGGCGTTGGACGATGGGTACAAGTACCAGTGTGAACGTTGTACTGAGGTGTGGAATACCATCACCGAATTGGAGTCCCACAGGGAGAAAGAGCATGCTGCTAATTTCAACTGTGACGAATGCGGACAGGTACTACATAGTGCGCGAGCTCTCCTCATCCACAGCAGGGCTCACAAAAGCCTGAAGCCCTACGTCTGTGACACTTGCGGCAGAAGCTACTCCCAAACCTCCCACCTCTGGCAGCACATGCGCTTCCACCAAGGTATAAAACCTTTCGCTTGTCCCCACGAGGGGTGTGAAGCCCGATACACAATccgtccggaccttaaagaccacatccgcaaagtccataccagagaaagacccttcaagtgtagcgtctgtggcaagtgtttcctcacgggctcagtctactaccagcacaggctcattcataccgaagatcgacgttatggatgcGATATGTGTGAGAAGAGGTTCTTCCGAGCTGACGCTTTAAATAATCATAAGAGGATTCATACAAATGAGCGGCCGTACCCTTGTTTTGTGTGTGGAAGGTTGTTTAGACAGAAGGGGGATCGCAATAAGCACTTCAGGACGCAGCATCCAGATGCTATTTTGAATTAA
- Protein Sequence
- MLAGDNRTISVINTHFISDSGKISSMRYEVDLAVHQIINKSHFITDKNVSFNISDAVIFSHQRLFNEDLGSVQLYRLDNSQNLARKPKLNIPNLIRCQNCETNYPTKYQYQRHQCEFNAEKVVLKPNADLADIEKGKRIKYDCPTCGKQFVSKNNLERHQTSHESSKDNTCEHCKKQFVSENRLRIHKENHCKKAGDISKFYRSDVTVWKCKKCHEVFSSSITAGYHVDLCTDLIDSSDIKKEPLSDSSGDQNPKNDKTIEKISTEILLQCEFCNRTYADKQILLKHQKTHKTDKNYECVICKDVFESYITASQHWLKKCSEKANLFYLPKLTYCEFCDRTFKSHEILYTHKIKKKHYTPKIHESVVEKTSNPVKDIKSEDVIDKLIEDVLIALEIPINKRKKNVENKEEIDKENVCCETTKVKTEPLNQTITQNVEEPSGVPEKKKRGRKRKFPKQQPKAKKPCVALDDGYKYQCERCTEVWNTITELESHREKEHAANFNCDECGQVLHSARALLIHSRAHKSLKPYVCDTCGRSYSQTSHLWQHMRFHQGIKPFACPHEGCEARYTIRPDLKDHIRKVHTRERPFKCSVCGKCFLTGSVYYQHRLIHTEDRRYGCDMCEKRFFRADALNNHKRIHTNERPYPCFVCGRLFRQKGDRNKHFRTQHPDAILN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01410286;
- 90% Identity
- -
- 80% Identity
- -