Zmor029450.1
Basic Information
- Insect
- Zophobas morio
- Gene Symbol
- ECU03_0790
- Assembly
- GCA_027724725.1
- Location
- JALNTZ010000002.1:19882593-19903568[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.013 0.78 11.5 2.5 3 23 51 72 50 72 0.95 2 12 4e-05 0.0024 19.4 0.2 2 23 78 99 77 99 0.95 3 12 0.00071 0.043 15.4 3.1 1 23 105 127 105 127 0.98 4 12 0.0002 0.012 17.2 2.4 2 19 134 151 133 155 0.90 5 12 4.1e-07 2.5e-05 25.6 2.2 1 23 160 182 160 182 0.99 6 12 0.014 0.84 11.4 2.2 1 23 214 236 214 236 0.98 7 12 0.002 0.12 14.0 0.6 1 23 241 263 241 263 0.95 8 12 0.012 0.72 11.6 1.8 1 23 298 322 298 322 0.88 9 12 0.081 4.8 9.0 1.8 1 23 355 379 355 379 0.72 10 12 2.1 1.2e+02 4.5 0.0 2 16 385 399 384 401 0.84 11 12 1.9e-05 0.0012 20.4 0.7 2 23 406 427 406 427 0.98 12 12 2.2 1.3e+02 4.5 0.2 1 9 432 440 432 443 0.87
Sequence Information
- Coding Sequence
- ATGTCTACAAATTATTCAGAACTAAGGACGCGCGGCGTCGCACCGTTCGTCGAAGGACCGTGCAAGAAAGAATCCTTAGCTAGTCAAGACGATGAAGAGTGGAAACCTGGACGTAGTACAAGCAGCAAATTAAAAAAGGGTCAAAACCTCTGCAAAATTTGTAATTTGAAATTCCCATTCTACAAAACTTTACGAAAACACAGAAAAGACTTCCATACGGAAAAATCGTTGAGTTGTCCTGTTTGTAAGAAACTTTTCAAAGATCAGTGGAATCTTAACAAGCACGCTGAAATACATTCCCAAGAAAATAAATACTACTGCGAAGAGTGCGACGAACACTTGAAAACATATCAACAGTTGCAGGAACACAGACGTCGACATCGAAACCCGGAAGGTTTGGTGTGTCCTGATTGCAAAAAAGTGTTCGTTTCGCGTTCATCTTTCCGCAAACATTGTTTGCTTCATCAGGGCATACGGTATAAGTGTGAAGTGTGCAAAAAAAGTTTTAGTGATTCTGGCACCTTGAAAACTCACTTGAAGAAACACGACGAAAATTTCGTGCAACCGTCGTGTAACACAGACTTGTTCAAAAAAGAAGACTTAGAAAACAATCTGCCTGACCATCCTGTTAACAAGAAGTACTACTGTGCCGTTTGCAACACAGATTTTCTTACTTACTCTAAATTAAAAAATCATCGCAGAAACCATAAAACGAAAGACCATGTGTGCGCTCTTTGTGGCAAAGGTTTCAAGAATGGGTTTGAACTGAAGATTCACAATTTGTCACATTCGAAGGAAAAACCATTCGAATGTGATCTTTGTGGTGCCACTTTTAAATGCAAGAACAAACGGAACTACCATAGGAGATGCCATGAGACGCCCGATAAACAACACATATGCCCTATTTGCGGAAAAACCTACAACCAATTTGGAAAAGGAGCTCTGCTTGTTCACATGCGCAAACACAAAAACTCGGGAAGCAAATGTAAAATATGCGATGAATTTGTTCCTGATGACCAGAACAAGAAGCACAGGAGATGCCACGAGACCCCCGATAAACAACACATATGTCCCATTTGCGGGAAAACCTACAACCAGTTTGGACGAGCAGCTCTGGACAGTCACATACGCAAACACAATAACTCTGGAAGCAAATGTAAAATATGCGGTGAGATTGTCCCCGATGCCGAGACGTTGGCCATAGGTGGTCCCCGCAGATGTACGAAGTGCCCAGCCACATTCCAAACTCCGAGTGAACTAACAGCTCATCGTAAAACCCACGTCCCCGACCGCTTTTTCTGCAACATTTGTGGCAAGGCTGTGGCATTTGTGGCGAAAAATTCAAAAACGGAAAATACTTGTCTCGCCACAGACGGAGCCACGTTGAAAAGAAACTCATTTGCCCCGAGTGCGGTAAAAGCTATAGATATGACGCACATGCATCATTTATGA
- Protein Sequence
- MSTNYSELRTRGVAPFVEGPCKKESLASQDDEEWKPGRSTSSKLKKGQNLCKICNLKFPFYKTLRKHRKDFHTEKSLSCPVCKKLFKDQWNLNKHAEIHSQENKYYCEECDEHLKTYQQLQEHRRRHRNPEGLVCPDCKKVFVSRSSFRKHCLLHQGIRYKCEVCKKSFSDSGTLKTHLKKHDENFVQPSCNTDLFKKEDLENNLPDHPVNKKYYCAVCNTDFLTYSKLKNHRRNHKTKDHVCALCGKGFKNGFELKIHNLSHSKEKPFECDLCGATFKCKNKRNYHRRCHETPDKQHICPICGKTYNQFGKGALLVHMRKHKNSGSKCKICDEFVPDDQNKKHRRCHETPDKQHICPICGKTYNQFGRAALDSHIRKHNNSGSKCKICGEIVPDAETLAIGGPRRCTKCPATFQTPSELTAHRKTHVPDRFFCNICGKAVAFVAKNSKTENTCLATDGATLKRNSFAPSAVKAIDMTHMHHL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -