Zmor041517.1
Basic Information
- Insect
- Zophobas morio
- Gene Symbol
- -
- Assembly
- GCA_027724725.1
- Location
- JALNTZ010000005.1:29491899-29494220[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.12 7.5 8.4 2.3 1 23 6 28 6 29 0.94 2 21 0.0078 0.47 12.2 4.4 1 23 126 149 126 149 0.93 3 21 0.076 4.5 9.1 6.2 1 23 158 181 158 181 0.92 4 21 0.0041 0.25 13.0 5.0 1 23 188 211 188 211 0.94 5 21 1.1 66 5.4 2.9 1 23 220 243 220 243 0.93 6 21 0.93 56 5.6 4.6 1 23 252 274 252 275 0.95 7 21 0.0016 0.097 14.3 3.6 1 23 281 304 281 304 0.98 8 21 0.0059 0.35 12.6 0.4 1 23 313 336 313 336 0.97 9 21 0.04 2.4 9.9 2.2 1 23 353 376 353 376 0.97 10 21 0.0089 0.53 12.0 4.3 1 23 385 408 385 408 0.98 11 21 0.00019 0.011 17.2 3.1 1 23 417 439 417 439 0.98 12 21 0.001 0.063 14.9 0.1 1 23 448 471 448 471 0.96 13 21 1.6 96 4.9 2.8 1 23 480 502 480 503 0.93 14 21 0.007 0.42 12.3 1.4 1 23 512 535 512 535 0.98 15 21 0.013 0.79 11.5 0.9 1 23 544 567 544 567 0.97 16 21 0.31 18 7.1 1.4 1 23 576 598 576 599 0.94 17 21 0.00086 0.051 15.2 1.0 1 23 608 631 608 631 0.97 18 21 0.0043 0.26 13.0 2.4 1 23 640 663 640 663 0.97 19 21 0.036 2.1 10.1 1.0 1 23 672 695 672 695 0.94 20 21 0.0012 0.072 14.7 1.5 1 23 704 727 704 727 0.95 21 21 0.0035 0.21 13.3 1.9 1 23 736 759 736 759 0.97
Sequence Information
- Coding Sequence
- ATGTCAAAAAATATCCACGATTGTAAGCTTTGCCCATACTTTACCCCATCATGGTTTCTCTTGGTAAGCCACGGCAGACGCCACCACTCAACGCCCCCACCCTTCAGATGCGACCTCCCCATCGAAAGCTACTACTGCAAAGATTGCAATTTCCAGACAAATCTGAGCCTCCTGTACAAACAACACAATGAAAACCATTACAAAATAAAAACAGAAAACGAAGACGAAATCGCCATCCAAAGCTACAAGTGCGAAAAATGCGATTTCAAAACCCTATTCGTGCTTAAGTGGCTTCAACACACCGCTACGTGTTTCGGTAATGAACACCTTCAGGTTTTAATAAATCATCCCAAAAACGAAAAAACCGCCAAATTGTACGACTGTAAACAGTGCGGGCGCGTCTTCAAGTGCAACCAAAACCTGAAAAAACACAAAATTCTGAAACACTCGAACGACGATGAAGTGTGTTGGCACCACTGTACAAAATGTTCGTACAAGACGAAATTAAAATCAAACTTGCGAAAACATATAGATTTACAACACACAGAGAATATTGTGTGGTATAAGTGTGAAAAGTGTCCACACCAAACCAAGTATAAATCGCATTTAAAAAAGCACGAAAATGCTGTACATTTGGACGAACGGGAGATCAAATGGTATAAGTGTGAAAAGTGCCCCTATAAAGCTAAGTATAAGTTGTGTATGAAAAACCACATAACTGCGCTTCATTTGGACGAAAAAGAAATTAAGTGGTACGAATGCAATCAGTGCCCATATAAAGCTAAAACTCATTGTGCTTTAAAAGGTCATTTAAGTTGGCACCACTTGGATGTTAAATGGTACGAATGCAAAAAGTGCCCATTTAAAACCAAATACAAGTCGTATGTAAAAAAGCACATGATTACGCGACATGCGAATGAAAGTGATATCAAATGGTATGAGTGTGACAAGTGTCCATATAAAGCTAAAGCACTGTCAAATTTAAAGCAACACGTGAATTCATACCATTCGTCTAGCAATCACGTTTCAAGCAATCGCACAAGTGTTGTTAAATGGTTTCAATGCAAATCGTGCCCATTTAAAACTAAATATAAAGGAGTTTTAAAAACACACATTAACTCACGACATTTGGACGAACATGACGTTAAGTGGTACAAATGTGAAAAGTGCCCGTATAAAACTAAATATAAATATTATATAAAGCACCACATAAATATGGTGCATGAAGACGAACGGGATATTCAGTGGTACAAATGTGACAAGTGTTCGTACCAATCTAAGAACAAATCGAATTTAAATAAACACGTAAACAACCATGCGGTTGAACAGCATACCGTATGGTATAAGTGTGAAAAGTGCCCATACAAAACTAAAGTGATTAGTAATTTAATTCAGCACATAGCTGTGCCGCATTTTCACGAACACAATATTACATGGTATCAGTGCAAAGAGTGTCCGTATAAAAGTAAATTTACCACTATATTAAGGTACCACATAAACGCCCACCACATGGACGAAAAAGATGTCCGATGGTACGAATGTGACGAGTGTCCTTACAAAGCCAAAGTTAGTACAACTTTAAGAAACCACGTACGGTCGTGCCATTTAAACGAAAACGACGTCAAATGGTACCAATGTGACCAGTGTTCATTTAAAGCTATGGACAAGTCGAGATTAAACCGTCACATGATTGTGCGACATTTGGACGAACAAGACATTAATTGGTACCAATGCGACAAGTGCCCCTATAAAGCTAAAGAAAAATACATTTTGAAACGACACGTCGTCGTGCATCATGTGGACGAAAAGGACATTAAATGGTACGAATGCAAACAGTGCCCGTATAAAGCTAAGAGAAACAGTTATTTGATAAATCACGTAAACTCACGACATTTGGAAGACAACGAGGTTAAATGGTACGAGTGTAAAAAGTGCCCGTATAAAGCTAAAAAGAAATTTTACTTGAAAAGTCACATCAACGTGCGACATTTGGACGAGAGTGAGATTAAGTGGTTTGAGTGTAAGAGTTGTCCATTTAAAGCTAAGAAAAAGGCGGATTTGAAGACGCATATGACGGCTCGGCATTTGGATGAGAGTGAGATTAAGTGGTTCGAGTGCCAGGATTGTTCGTACAAAGCTAAAAGAAAGTCGAGTTTGAAAAATCACGTCAATGAGCGCCATTTGGAAGAGAAGGATGTTAAATGGTTTGAGTGCAAAATGTGTTCGTATAAGTCTAAGAGGGGTTCTGATTTGAAGAAACATGTTAATTCGCAACATCCGGATCTCTTCTATCTCCGTGATCCGGATGGAGAAATTGTGTAA
- Protein Sequence
- MSKNIHDCKLCPYFTPSWFLLVSHGRRHHSTPPPFRCDLPIESYYCKDCNFQTNLSLLYKQHNENHYKIKTENEDEIAIQSYKCEKCDFKTLFVLKWLQHTATCFGNEHLQVLINHPKNEKTAKLYDCKQCGRVFKCNQNLKKHKILKHSNDDEVCWHHCTKCSYKTKLKSNLRKHIDLQHTENIVWYKCEKCPHQTKYKSHLKKHENAVHLDEREIKWYKCEKCPYKAKYKLCMKNHITALHLDEKEIKWYECNQCPYKAKTHCALKGHLSWHHLDVKWYECKKCPFKTKYKSYVKKHMITRHANESDIKWYECDKCPYKAKALSNLKQHVNSYHSSSNHVSSNRTSVVKWFQCKSCPFKTKYKGVLKTHINSRHLDEHDVKWYKCEKCPYKTKYKYYIKHHINMVHEDERDIQWYKCDKCSYQSKNKSNLNKHVNNHAVEQHTVWYKCEKCPYKTKVISNLIQHIAVPHFHEHNITWYQCKECPYKSKFTTILRYHINAHHMDEKDVRWYECDECPYKAKVSTTLRNHVRSCHLNENDVKWYQCDQCSFKAMDKSRLNRHMIVRHLDEQDINWYQCDKCPYKAKEKYILKRHVVVHHVDEKDIKWYECKQCPYKAKRNSYLINHVNSRHLEDNEVKWYECKKCPYKAKKKFYLKSHINVRHLDESEIKWFECKSCPFKAKKKADLKTHMTARHLDESEIKWFECQDCSYKAKRKSSLKNHVNERHLEEKDVKWFECKMCSYKSKRGSDLKKHVNSQHPDLFYLRDPDGEIV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -