Zmor000635.1
Basic Information
- Insect
- Zophobas morio
- Gene Symbol
- ZIPIC
- Assembly
- GCA_027724725.1
- Location
- JALNTZ010000001.1:9014434-9017283[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 9.5 5.7e+02 2.5 0.1 2 23 7 28 6 28 0.92 2 15 2.9 1.7e+02 4.1 1.3 1 11 470 480 470 493 0.81 3 15 1.3 81 5.1 0.2 2 23 569 591 568 591 0.92 4 15 0.044 2.6 9.8 2.6 1 23 599 621 599 621 0.98 5 15 9.3e-05 0.0056 18.2 1.1 2 23 624 645 623 645 0.97 6 15 0.037 2.2 10.0 2.6 1 23 651 673 651 673 0.97 7 15 1.7e-05 0.001 20.5 4.1 2 23 680 701 679 702 0.95 8 15 3.2 1.9e+02 3.9 2.1 6 23 716 733 714 733 0.95 9 15 0.00012 0.0074 17.8 5.5 2 23 739 761 738 761 0.96 10 15 0.051 3.1 9.6 0.0 2 23 777 797 776 797 0.96 11 15 0.0006 0.036 15.7 0.8 1 20 803 822 803 825 0.91 12 15 0.00024 0.015 16.9 0.2 1 23 833 855 833 855 0.99 13 15 0.0062 0.38 12.5 5.5 1 23 861 883 861 883 0.98 14 15 1.1e-06 6.4e-05 24.3 4.0 1 23 889 911 889 911 0.98 15 15 0.003 0.18 13.5 7.0 1 23 917 939 917 940 0.96
Sequence Information
- Coding Sequence
- ATGGATTCAAACAACATATCCTGTCCCGTTTGTACATTATACCTCAGACCTGGCATAACCCTAAAGACCCACCTAAGCAGCCATCCAAAACAGAAGGTGATTGAAGCCCTAGTCCGCTTGTCAGAAACCGGAGAAGTGGAAAAAATCGGAAACTCTTCGTCCCAACCCGACGGCAGCTCGATCAGTTCCCACGTGAACACAGCTATAGTAAACCAAACTTGGAATCAAGGTAACTTAGTAAACATGCCTCCGAGCATCCCTTCTCTGCAAGGCAACCACGTCTTCATTTACCAACAAAGCATGACCACCACTCCGCAACAAAACGTACTAAACGTGAACCCCCCGTCTCAGCAATACGTCATTCCCACGATTTTCAACCCGCAAATGATGCCGTGCATCTACCAGCAGCAGGTCATCATGAGCAGCGGCTGCTTGTCGCCCATGCGGACGCTGCCGTTCGAGCTGCCGCCGTCCACGTCGCAGCCGGAGTGCAGCTCGACGGACACGTCGTCGACGGAGAGCGAGGAGTGCAAGAAGATCGACGAGATCGAGGACGAGCCGGAAGCGAAGAGCGAGGGCCAGCCGGAGGGCAACCTCGACATGGAGGTGTACGAGATGGAGGAGGAGGGCGACAACTACGCGCCGACGGAAAACGACGAGGCGCCGTCGCCGGCCGGGTCGGAGGGCTCCGAGTTGAACAAAGCGTGCCAGACGCAGAGCAGCAACCAGATGTCGCCGCAGTCGGTGCAGGACGAGGAGGCGCTGGAGGAGGTGCCGAAGCCTCCCGAGGAGTATTATTTCGTGGGGGAGAGCGAAACTCCTCCAGTGTACACGTCGGTGGAGTTGAGTCAGACGTACGAGAGTAACCCTATTTACACCGCTTCCAATATCTTGCAATCTGCCGATCAGTTAGATTTTGTTGATATGGATGGGATGCACGTGGTAATTAATGAAATAAATGATTTTTCGACTAGTCAGATCATTTCTCAAGTTGAAAATTTTGAAGGTAATGGCCCTGACAGACCCGGAGTGTTAATGACGATCGGCGGAATGATCGATAACTCGAAAGATGGTTTTCTCGAGCAGAGAGACGCTGAAGAGAGTATGTCGAGGGAGAGTTCGAATGTGAACATAAGGGCTGACGAGAGAATGCCTCCGAGGGGGGAGTTGTCGGGACAGGAGAGCATAGGGGGCTCGAGCGACATCACGTGGAATCGGGTGCAGTACAACGAGGGTAGTTCGGGAATGTCCACCTCGTACGACCTTCTGGCCAGAGAGAACTGGGAGGCGTCGGATAGCTCCGACGTGGAGGTGCCGCCTCTCCAGAGCCGCATTCCCCCCCACGTCAACTACCCCGACGAAAGCGAAACTCCCACCATCGTGAGTTTCACCGGGCCTCCGCTGAACTTCAAGTGTCCGTCGTGCGACGAAGCCTTCACGTGTTTACGCGATCGCAAAGAACACGAAGCGGAGAAGCACCCAGAGAAACGAAAACCGAATCGAATAGGCTCCGAAATCGGCAAAAGCAAAATAAAAAAATTAGTAGTCAAATTCAAGTCGGATAAGCCCGAAAATTTCGACAACGTCTTCACCAATAAATTAAAAATGGAAACTCCCCCCGAAACCGAAAAGGTACCTGAGGTACCGTGCGAAGAACCTGTCGCTGCGGTCAAAAGCGACGACCTCTCCGTCGAACTAAAAACCGTCTGTCCCATCTGCGACTGCGTTCTTCTCAACGCTAAAGCGTTAAAAGAACACAAAATCAGCGTCCATAACGTGACCGCACAAACTCGACATAAATGTATGACCTGTGATCAACAATTCCCGAACGACTATAAGTTTTCCGAGCATTTGCGCATTcaccctctggagtgtaaaatctgcgggaggttgttctacagacgccagaacatccagctccacatgaggagacacctggggatcaaaccgtacaaatgcgacgtctgcgagaagtctttccttactaagcagaagttggacgagcacaggcacatccatacgggggaagcccccatcaagtgccccctgtgcgacgagacgttccgccgccACTCTAACCTCGTCCAACACCGCAACCGCCACCACCTAAACATAAAAAAGAAAGTCAAAGACTACATCTGCTTCTGCAAGGAAGTTTTCCACTCGAAAAAAAAGCTAGCGTGGCATAAGGAAATCCACGACGCTAAGCCGAAATCGTGTACCCATTGCAACGAAAAGTTCATACACATGTCGAGTTTAACGCGGCACATGCGCAGAGCGCACAACGACAGGTTTCTTCCGACGGGTCACAAGAACgcggagaacgtggagtgtcccatttgcaaaggggtgtacctgaagtcctcgctggaagtccacatacgtaaccacagcggccaaagaccctacgcttgcttgatctgcaataaggacttcacgaccaagtggaacctgaagctgcacaagtggacgcacgcgtcgagggtttccaagcccttcaagtgcgaccagtgcaagggcgctttcatcagggagtccgactacatcgctcacatgaactcgcataagagcatcaggccctacacttgcaaccactgcggggctcagttcatccgaaagtacaactgccagagacatgtcaaagagcacgagaacgagaaaatgttcagttgtaaggtctgcgggaaatcttttcatcggtcctattatctcaaagatcatatgcgcatacatagtggcttgaggccgtattcctgccatatttgtgggaagacttccacgactaagtcgaatcataataagcacgtgcagatacatcatgctagagagccggtcagtactgagAACTGA
- Protein Sequence
- MDSNNISCPVCTLYLRPGITLKTHLSSHPKQKVIEALVRLSETGEVEKIGNSSSQPDGSSISSHVNTAIVNQTWNQGNLVNMPPSIPSLQGNHVFIYQQSMTTTPQQNVLNVNPPSQQYVIPTIFNPQMMPCIYQQQVIMSSGCLSPMRTLPFELPPSTSQPECSSTDTSSTESEECKKIDEIEDEPEAKSEGQPEGNLDMEVYEMEEEGDNYAPTENDEAPSPAGSEGSELNKACQTQSSNQMSPQSVQDEEALEEVPKPPEEYYFVGESETPPVYTSVELSQTYESNPIYTASNILQSADQLDFVDMDGMHVVINEINDFSTSQIISQVENFEGNGPDRPGVLMTIGGMIDNSKDGFLEQRDAEESMSRESSNVNIRADERMPPRGELSGQESIGGSSDITWNRVQYNEGSSGMSTSYDLLARENWEASDSSDVEVPPLQSRIPPHVNYPDESETPTIVSFTGPPLNFKCPSCDEAFTCLRDRKEHEAEKHPEKRKPNRIGSEIGKSKIKKLVVKFKSDKPENFDNVFTNKLKMETPPETEKVPEVPCEEPVAAVKSDDLSVELKTVCPICDCVLLNAKALKEHKISVHNVTAQTRHKCMTCDQQFPNDYKFSEHLRIHPLECKICGRLFYRRQNIQLHMRRHLGIKPYKCDVCEKSFLTKQKLDEHRHIHTGEAPIKCPLCDETFRRHSNLVQHRNRHHLNIKKKVKDYICFCKEVFHSKKKLAWHKEIHDAKPKSCTHCNEKFIHMSSLTRHMRRAHNDRFLPTGHKNAENVECPICKGVYLKSSLEVHIRNHSGQRPYACLICNKDFTTKWNLKLHKWTHASRVSKPFKCDQCKGAFIRESDYIAHMNSHKSIRPYTCNHCGAQFIRKYNCQRHVKEHENEKMFSCKVCGKSFHRSYYLKDHMRIHSGLRPYSCHICGKTSTTKSNHNKHVQIHHAREPVSTEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00415357;
- 90% Identity
- -
- 80% Identity
- -