Zmor013127.1
Basic Information
- Insect
- Zophobas morio
- Gene Symbol
- -
- Assembly
- GCA_027724725.1
- Location
- JALNTZ010000007.1:1431439-1435224[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.0023 0.14 13.8 1.0 1 23 127 150 127 150 0.96 2 20 0.96 58 5.6 0.1 2 23 154 175 153 175 0.92 3 20 2.8 1.7e+02 4.1 0.9 1 23 182 205 182 205 0.89 4 20 0.0043 0.26 13.0 2.1 2 23 209 229 208 229 0.97 5 20 0.52 31 6.4 2.1 1 23 253 276 253 276 0.94 6 20 0.0023 0.14 13.9 1.0 2 23 280 300 279 300 0.97 7 20 0.005 0.3 12.8 0.7 1 23 327 350 327 350 0.95 8 20 0.38 23 6.9 0.1 2 23 380 401 380 401 0.92 9 20 0.11 6.8 8.5 3.5 2 23 407 429 406 429 0.96 10 20 0.54 32 6.4 3.9 1 23 528 551 528 551 0.94 11 20 1.8 1.1e+02 4.7 0.5 2 23 555 575 554 575 0.96 12 20 2.4 1.5e+02 4.3 0.9 1 23 660 683 660 683 0.92 13 20 1.9 1.1e+02 4.7 0.2 2 23 687 707 686 707 0.93 14 20 0.082 4.9 8.9 1.8 1 23 719 742 719 742 0.97 15 20 0.00045 0.027 16.1 1.9 2 23 746 766 745 766 0.97 16 20 0.00073 0.044 15.4 2.5 1 23 797 820 797 820 0.97 17 20 2.1e-05 0.0013 20.3 0.2 1 23 826 849 826 849 0.94 18 20 0.00012 0.0074 17.8 1.8 1 23 855 877 855 877 0.97 19 20 9.3e-07 5.6e-05 24.5 1.2 1 23 883 906 883 906 0.98 20 20 0.00015 0.0088 17.6 1.1 2 23 915 936 914 936 0.96
Sequence Information
- Coding Sequence
- ATGGACATTGACACCATCGATTCTAAAATCCGGTACCAACCTAGAGTTTGTAGGTTATGTTTAGCCCTAACAACAACATATTTTTCGTTAGTGGAAGACACCCGAACGGCTGGAATGCTGGAAGCTCTCACGTCGCTAAGAATTTTACCTTCTGATGACATTTCTACAGTGACGTGCCTCAAGTGCCTCTTAAACCTCAAACTCGCCTTCAGCATCCAACAAAACATGCTTAAAGCGGAACAGCGATTCCGGCAACACTTTTTCTCGGTTCCGATTAAGCAAGAGCGCGATCTCGAAAACGTGGAACCGGAAGAACATAAGTTTGACATGGATGTAACCCACTTGATGAAAGTGGATCAAGACAGCCCGCCGGAAGAGTACATTTGTGATTTCTGCGGGAAAAAGTGGTCTTCGAGGAGCGATTTGAGCAGACACAAAAAGAACGTGCATATGCAAGTGACTTGTCCCATTTGTGCGAAAACTATTAAAAAAGGAAACATTAAGGCGCACATGGATAACAAGCATGCCACGACTGGAGAAATCCACGCTTGCGACATCTGCGGGATCGAAAAATCATCAAAAGTCGCGTTATACAAACACAAACACTGGGTGCACAAACTCAAAAAATGTCACATTTGTAACGAGGAATTTACTTCAATTTTGTTAAAAAAGCACCTGGCGACTCATAGCCCGCCGCGGGAGCCACCAATGAAAGTGGAGTTGCAAGACCCCGAGATCACGCTTCAAAGAGAGCGCCACATTTGCGACCTTTGTGGCGTAGAAAAGTCAACAAAGGCCACTCTAACCAGACACAGACACAGTGTTCACAAACTAAGCAAGTGTAATATATGCGAGAAAGTAGTCAAGTCGGAATCGTTGCGAAAACACCTAAAAACCCACGACACTCTTCCAATTAAAACAATCAAAGTGGAAAACGTGGACTGCGACGACGCTCTCAACATGAATCCGGAAGACGAATTCAGTTGCGAAATCTGCGGCAAAACTAAAACCTCGCTTAAGGCTTTAAATAGACACAAATCTAGTGTCCACGTGGAGGGCGAATGCCCTATTTGTAAGAAAAAAATGGCTCAAGTGAACCTGAAGCCCCACATCGAGCGCCACAGCAAACTCTTCGCCGTGTGTGAGCTCTGTGGCGTTTCTGTGGTTAAGCAGGACTTGCGCAGACACATGTTCAATGTACACACAGTCCGGAAATTGAAGTGCGCCTTCTGTGATAAAATTTTCAGAAAACATTATAGCAGAACTTTGCACGAACGGCGGGAACATTTAAATGAAGGCAACTACACTTGTGACAGGTTATGTTTAGCCCCAACAGCCACAACTTTTTCCTTAGTTGAAAGTAACGAAATCTCGGGGATGCTGGAAGCTTTAACGTCCCTACGAATTTTACCGTCAGACGAAATCTCGACTGTGATGTGTCTAAAATGCCACCTCAATCTCAAACTCGCGTTTGCCATTCGGCAGAAAATGGTAACCGCGGAGCAACGATTTCAGCGACGCGTATTACAATCCATAAAAACAGAAACTAATGAAAATAATATCAAACAAACTGAAAAAGTCTTCACTTGTGATATCTGTGGTAAACAGAAACATTCAAAGAAGCAATTAAGAGTGCACAAGTACAGCAACCACGAACAAGTTGAATGTTCCTTATGTAAGAAACAAATCCGAAAAGGGTACATTCGTGAACACATCAAGATGCACGAGCGAAAAACGCAAGGAGACGGACAAATCCCCGTTTTTCAAGAGTTTGCGTGCGATATTTGCGGCACGTGGAAATCCTCAGAGGCTGCTTTACGCAAGCACAAAAATTACTGTCACGTGGAACGGGATTGCCCGGTTTGTTTGAAAAAAATCAAACTTGCTAATTATAATCGCCACTTGTTTCAAGTGCATGGGATCAAAGTGGAGCGACTTGAACCAGAGAGGGCGCTCAAACCACCCACAAAAAAAGAGTACACTTGTTATATCTGTGGTGGGAAAAAGGCGTCTAAAACGAGTTTGTACAATCACACATTTACCGCCCACAGATCTAGTGAGTGTCCCGTATGTAAAATGAAAATCAAGACTGCCAACTTAACGCTTCACATTGAACGCCATAAAATAGACTTGAACGAGACTTCTGACTTGAAATTTAAATGTAACTTTTGTGATAAAGAGCTCTTAAGCAAGCCTGCGTTGACGAGACACGTGCATACTAGTCATTCCCGGAGCGAGTGTCCTATTTGCAAAAAAAACCTGTCGTCGTCGAACTTGAATCACCACATCCGTCGTCACGCTAGAGCCACCACAGTTTGTGAAGTCTGTGGACTCACTGTGAAAACCATAGACATAAAATACCACATGATGTGTCACTCATCAGTCGTCTACAAGTGCGACTTCTGTGACAAAGAATTCAAACGCAAAAATAACAAAGTTTTGCACGAAAGGAGAGAACACAAAGGTGAGGCGAATTTCGTGTGCGAGACCTGCGGCAAGAGATTTTATTCAGCCCCGTATTTAAAGCGACACATTTCAGCTATACACTTAAAACTAAAACCGTTTGCTTGCAATAACTGCGATTTGAGTTTTTCAACTAGAAATTCGTTGAGAACGCACAGCAGGCAacacactgatgaaagaccctacaagtgtgatTATTGTGGTGAAGGGTTCAAACAAAAGGTGTCGCTGAAGTCGCACTTGAGGTCGCAGCACGACGTCCACGAAGAACTCACCTGCGAATGCGACACTTGTGGGAAAAAATTTGCTTCAAAGTGGGCTTTATTGACGCATAGTAGAGTGCATAGTTAG
- Protein Sequence
- MDIDTIDSKIRYQPRVCRLCLALTTTYFSLVEDTRTAGMLEALTSLRILPSDDISTVTCLKCLLNLKLAFSIQQNMLKAEQRFRQHFFSVPIKQERDLENVEPEEHKFDMDVTHLMKVDQDSPPEEYICDFCGKKWSSRSDLSRHKKNVHMQVTCPICAKTIKKGNIKAHMDNKHATTGEIHACDICGIEKSSKVALYKHKHWVHKLKKCHICNEEFTSILLKKHLATHSPPREPPMKVELQDPEITLQRERHICDLCGVEKSTKATLTRHRHSVHKLSKCNICEKVVKSESLRKHLKTHDTLPIKTIKVENVDCDDALNMNPEDEFSCEICGKTKTSLKALNRHKSSVHVEGECPICKKKMAQVNLKPHIERHSKLFAVCELCGVSVVKQDLRRHMFNVHTVRKLKCAFCDKIFRKHYSRTLHERREHLNEGNYTCDRLCLAPTATTFSLVESNEISGMLEALTSLRILPSDEISTVMCLKCHLNLKLAFAIRQKMVTAEQRFQRRVLQSIKTETNENNIKQTEKVFTCDICGKQKHSKKQLRVHKYSNHEQVECSLCKKQIRKGYIREHIKMHERKTQGDGQIPVFQEFACDICGTWKSSEAALRKHKNYCHVERDCPVCLKKIKLANYNRHLFQVHGIKVERLEPERALKPPTKKEYTCYICGGKKASKTSLYNHTFTAHRSSECPVCKMKIKTANLTLHIERHKIDLNETSDLKFKCNFCDKELLSKPALTRHVHTSHSRSECPICKKNLSSSNLNHHIRRHARATTVCEVCGLTVKTIDIKYHMMCHSSVVYKCDFCDKEFKRKNNKVLHERREHKGEANFVCETCGKRFYSAPYLKRHISAIHLKLKPFACNNCDLSFSTRNSLRTHSRQHTDERPYKCDYCGEGFKQKVSLKSHLRSQHDVHEELTCECDTCGKKFASKWALLTHSRVHS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -