Zmor038636.1
Basic Information
- Insect
- Zophobas morio
- Gene Symbol
- Hivep3
- Assembly
- GCA_027724725.1
- Location
- JALNTZ010000005.1:2380819-2382186[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00021 0.013 17.1 0.9 1 23 108 131 108 131 0.97 2 11 0.0012 0.073 14.7 0.4 2 20 141 159 141 164 0.95 3 11 1.1e-06 6.5e-05 24.3 0.4 3 23 178 199 177 199 0.96 4 11 0.00029 0.018 16.6 2.6 1 23 205 227 205 227 0.98 5 11 0.00031 0.019 16.6 1.8 1 23 233 255 233 255 0.96 6 11 2.4e-05 0.0014 20.1 1.4 1 20 261 280 261 281 0.96 7 11 0.00056 0.034 15.8 2.4 1 23 292 314 292 314 0.99 8 11 0.0015 0.092 14.4 4.5 1 23 320 342 320 342 0.95 9 11 0.011 0.65 11.7 0.7 1 23 348 371 348 371 0.96 10 11 9.2e-05 0.0056 18.2 1.4 1 23 385 407 385 407 0.98 11 11 0.00012 0.0074 17.8 1.1 3 23 415 436 413 436 0.97
Sequence Information
- Coding Sequence
- ATGTCAAATCTGTGCATAATTTGCCTAAACCTCGACGAAAACACCAAAATCCTGAGCGAGCTCGACGAAACCGACGTCCGTATTATCATAAAACTGCAGCGATGCGTCCCCGAAGTGGAGTGGAAAATCGATTCGCAGATTTGCTTTCCGTGCCTGCAGCAACTGGACACCGTGTGTGCTTTCCGCGATATGTGCATTCAGTCGTACTTGGCCCGCAAACACGAAGACTCCAAGCCCCCCAATCCTGACCCTTGGGACTACTCAGACCCGTGCTGCCGCAGCGACAGCGACGACGACAAGTCGGGGGCCCCCGATCAGCACTACGTCTGCTACCACTGCGAGGCCAAATTCAAGTCAAAAAGTGTCCTTGAAGCGCACATTCAGAACGAACACACGAAGAAAAAGCACAAAGTGAGCCCCACGTGCGACCAGTGTGGGAAAGCGCTATCGTCGGAGAGCGCCCTCAAAAGACACAAGGTGATTTGCGGGAAACGACAAGCTAAAGTGCAGGAGAGCAAGCCCTATAACATCTGTGACGTCTGTGGGGCTTCGTTCAGCAACAAGTATTTGTTGAAGCGCCACATGAAGAACGTCCATTGTACGGAGAAGAAGTTCCAGTGCGAGTTGTGCGAGCGCAAGTTCGCGTCGCACGTGTATTTGAACGCCCACAAGCGCTACCATTCCGGGGAGAGGAAGCACATTTGTTCGTTCTGCGGAAAGGGGTACATCACGGCGAGTGATTTGTACCACCACGAGAAAATACACGCTAATAAGCGCGCCTATAAGTGCCAAATTTGCTCAAAAGCGTTCAATACGTCTTCAGATTTACATAAACATAAGATTTGTGTTCACCAGGACCGGTCTCAGTGGAAGTATGAGTGCAGTTTTTGTCAGAGGAGGTTTCCGCTGAAGACGAACCTGGACACTCATACTAAGACCCACACGGGCGAGAGGAACTTCTTGTGCCATTTATGTGATAGGAAATGTATTAATAAGTCGGTGTTAAAAAGACACATCGAGAGCCACTCAATCGCCAAAACTTTCAAGTGCAATTTGTGTCTCCAAGGCTACAAGTACCAGAAAAGCTTGGATATTCACATGGTGAAAGTGCACGGGATCGGGGAGGCGAAGGTTCCAGAAAGAGTGAAAAAGTACTTTTGTAGCATTTGTCCTAAGAGCTACTTTGCGAACAATAAGTTACAAAAGCACATTAGGTCACACACTGGAGAAAGACCATTCGGGTGTCCCGCTTGTGATAAGTGTTTTATTGATAAGTCATACATTAAACAGCACTTGAAGACTGCCCATAATGTGTTTTAA
- Protein Sequence
- MSNLCIICLNLDENTKILSELDETDVRIIIKLQRCVPEVEWKIDSQICFPCLQQLDTVCAFRDMCIQSYLARKHEDSKPPNPDPWDYSDPCCRSDSDDDKSGAPDQHYVCYHCEAKFKSKSVLEAHIQNEHTKKKHKVSPTCDQCGKALSSESALKRHKVICGKRQAKVQESKPYNICDVCGASFSNKYLLKRHMKNVHCTEKKFQCELCERKFASHVYLNAHKRYHSGERKHICSFCGKGYITASDLYHHEKIHANKRAYKCQICSKAFNTSSDLHKHKICVHQDRSQWKYECSFCQRRFPLKTNLDTHTKTHTGERNFLCHLCDRKCINKSVLKRHIESHSIAKTFKCNLCLQGYKYQKSLDIHMVKVHGIGEAKVPERVKKYFCSICPKSYFANNKLQKHIRSHTGERPFGCPACDKCFIDKSYIKQHLKTAHNVF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -