Basic Information

Insect: Zophobas morio
Gene Symbol: -
Assembly: GCA_027724725.1
Location: JALNTZ010000007.1:5026096-5027826[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.088 5.3 8.9 0.2 3 20 6 24 4 25 0.86

2 13 0.011 0.66 11.7 0.6 2 21 32 51 31 52 0.92

3 13 5.8 3.5e+02 3.1 1.8 3 15 193 205 192 205 0.91

4 13 0.00013 0.0078 17.8 4.3 1 23 217 239 217 239 0.97

5 13 0.18 11 7.9 2.4 1 23 264 285 264 285 0.92

6 13 5.1e-05 0.0031 19.0 0.8 1 23 291 313 291 313 0.97

7 13 0.00011 0.0068 18.0 0.3 1 21 319 339 319 340 0.95

8 13 7.4e-05 0.0045 18.5 2.0 1 23 347 369 347 369 0.97

9 13 4.9e-06 0.00029 22.3 2.7 1 23 375 397 375 397 0.98

10 13 0.00025 0.015 16.9 9.1 1 23 403 425 403 425 0.99

11 13 2.7e-06 0.00016 23.0 0.4 1 23 431 453 431 453 0.98

12 13 2.4e-05 0.0014 20.1 0.2 1 23 457 479 457 479 0.98

13 13 0.0019 0.11 14.1 0.1 1 23 487 510 487 510 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.088	5.3	8.9	0.2	3	20	6	24	4	25	0.86
2	13	0.011	0.66	11.7	0.6	2	21	32	51	31	52	0.92
3	13	5.8	3.5e+02	3.1	1.8	3	15	193	205	192	205	0.91
4	13	0.00013	0.0078	17.8	4.3	1	23	217	239	217	239	0.97
5	13	0.18	11	7.9	2.4	1	23	264	285	264	285	0.92
6	13	5.1e-05	0.0031	19.0	0.8	1	23	291	313	291	313	0.97
7	13	0.00011	0.0068	18.0	0.3	1	21	319	339	319	340	0.95
8	13	7.4e-05	0.0045	18.5	2.0	1	23	347	369	347	369	0.97
9	13	4.9e-06	0.00029	22.3	2.7	1	23	375	397	375	397	0.98
10	13	0.00025	0.015	16.9	9.1	1	23	403	425	403	425	0.99
11	13	2.7e-06	0.00016	23.0	0.4	1	23	431	453	431	453	0.98
12	13	2.4e-05	0.0014	20.1	0.2	1	23	457	479	457	479	0.98
13	13	0.0019	0.11	14.1	0.1	1	23	487	510	487	510	0.96

Sequence Information

Coding Sequence: ATGGTGCAAATAAGTTGCCCTTTATGTTGCAACGAGACTTTCGACTCACCTTCCACCCTCAAAATTCACCTGGTGGATATTGTGGAAAATCTGCATTGTCCCACTTGTCATGAAAAGTTCGACAAATTGTCTGACCTTGTGGACCATTTGGACACCGCCTGTGCTCTTATTATAGAAATCGATGACCAGTCAATCGAGAGTCCTCAAAGCATCGAAGAAACTGGCGAGCTTTCGGAGAGTATTCTAGCCAGAGCGCTACTGGAGGGTGGTAAAGGCACGACGGAACTCGTAGAGGAACAAGTGCAGTATTACTGTCAAAGTTGTGATTCGCAGTTCGGGGATATCGACGACCACTTGAGTAATTTCCATCAAGGACAAGAAATAATTTTGGAGGAGGAAACCGTCAAACCCGCGGAGCCATCCCCCCCACTCCGCAAGAAAAAAGCACCAATCACGCAAGACATCAAAGACAAAGATGGCCGCTTGTACACCCGCAAGTTCGTCAAAATCGACAAATTCTGGCTGCAGGACGAAGACACCACTTCCACCCAAAACAACGTCGTGGAAGTCGCTTTATGTCAAACCTGTAACACTTGTTTCCCCACCTCTGAAAACCACGAATGCGCCGAAACCGACGCCAAAGATTTGCACATTTGCGACATTTGCAACACCTCTTTCTCCTCCCTCAAGTCCTTGAGGCTCCACCACCGCATGCACGTGCCAATCAAAACGCGCGAAATCGAAGCCGCGACCAATGACGACGACAGGGAGGAGACAGTCAGGGAGATCTTTAtttgcaaagtgtgcaaaaagacgtacaacaaagagcacgaacaagcacacatgagtttgcacgagtacaacaacgggtttaattgcggggtgtgcaataggaagttctttaccaagcctaacctagaaatgcacatgaaggctcacactaacaataaaaagtttacttgttcgtattgtaagaagccgttcgtgacgtacgatgctttgaacgagcatttgcagaatcagtgccagaagaggccgtacgcttgccagtactgcggccggagattcacgaggccgcacgagaaggtcaagcacgaacggatacatacgggggagaagccacacgtgtgcgagatctgcggcaaggcttttagggtgagttattgcttgacgttgcacttgaggacgcatacggggtccaggccttaccagtgcaaacattgcgggaagaggtttaagtctcatagtgtgtataaccatcatttgttgacgcattcggatgtgagggcttataagtgTCCTTATTGTCCGAAGGCTTTTAAAACCAGCGTCCAGTTGGCGGGGCATAAGAATAGCCACATCAAGCCGTTTACGTGTACGGAGTGTAATAGGCCTTTTGCGTCCTTGTATGCGGTGAGGGCCCACATGGAGACACACAAGAGGGACAACAACTTGAAGTACGAGTGTTGGATTTGTGGGGCTTTGTACTCGAGGGCGTTCGCTTTGAGGGATCATTTGAAGCAGCAGCACCAGCAGGTGGTGGGGGAGAAAGATAAAACGGAAGTGGTGGGAGTGGATGAGGAGATGGAGGCGGCAAATTCGATTTTAGTTAACGAGGATGATATTATTTTGGGGCTGGAGGGGGCGACGAGTATCGAGATAATTGAGAACGAGGGGGATTGA
Protein Sequence: MVQISCPLCCNETFDSPSTLKIHLVDIVENLHCPTCHEKFDKLSDLVDHLDTACALIIEIDDQSIESPQSIEETGELSESILARALLEGGKGTTELVEEQVQYYCQSCDSQFGDIDDHLSNFHQGQEIILEEETVKPAEPSPPLRKKKAPITQDIKDKDGRLYTRKFVKIDKFWLQDEDTTSTQNNVVEVALCQTCNTCFPTSENHECAETDAKDLHICDICNTSFSSLKSLRLHHRMHVPIKTREIEAATNDDDREETVREIFICKVCKKTYNKEHEQAHMSLHEYNNGFNCGVCNRKFFTKPNLEMHMKAHTNNKKFTCSYCKKPFVTYDALNEHLQNQCQKRPYACQYCGRRFTRPHEKVKHERIHTGEKPHVCEICGKAFRVSYCLTLHLRTHTGSRPYQCKHCGKRFKSHSVYNHHLLTHSDVRAYKCPYCPKAFKTSVQLAGHKNSHIKPFTCTECNRPFASLYAVRAHMETHKRDNNLKYECWICGALYSRAFALRDHLKQQHQQVVGEKDKTEVVGVDEEMEAANSILVNEDDIILGLEGATSIEIIENEGD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -