Zmor013125.1
Basic Information
- Insect
- Zophobas morio
- Gene Symbol
- -
- Assembly
- GCA_027724725.1
- Location
- JALNTZ010000007.1:1428060-1429608[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.0011 0.064 14.9 1.9 1 23 103 126 103 126 0.94 2 14 0.021 1.3 10.8 0.0 3 23 131 151 130 151 0.92 3 14 1.2 71 5.3 0.5 1 21 159 179 159 182 0.71 4 14 2.4 1.4e+02 4.4 0.2 3 23 187 206 186 206 0.85 5 14 0.001 0.06 15.0 3.4 1 23 224 247 224 247 0.92 6 14 1.6e-05 0.00095 20.6 0.3 2 23 251 271 250 271 0.97 7 14 0.02 1.2 10.9 0.6 1 23 282 305 282 305 0.91 8 14 0.00081 0.048 15.3 0.5 2 23 309 329 308 329 0.96 9 14 0.42 25 6.7 0.1 2 23 335 356 334 356 0.94 10 14 0.00058 0.035 15.7 1.0 1 23 361 384 361 384 0.97 11 14 6.3e-06 0.00038 21.9 2.0 1 23 390 413 390 413 0.97 12 14 0.0025 0.15 13.7 2.1 1 23 419 441 419 441 0.96 13 14 6.9e-06 0.00041 21.8 1.3 1 23 447 470 447 470 0.98 14 14 1e-05 0.00061 21.2 0.4 2 23 479 500 478 500 0.96
Sequence Information
- Coding Sequence
- ATGCACAATGAATCTAAAATCAAAAACGCCCCCCAAACTTGTAGGTTATGTTTGGCCCTAACCACAACAAGTTTCTCGTTAATCGGAAACAACGGAGCCTCGGGGATGCTTGAAGCCCTAACGTCGCTAAAAATTTTACCCTCAGACGAAATTTCGACGGTGATGTGCTTGAAGTGTTGTTTAAACCTAAAACTAGCTTTTACGATTCAACAAAACATGCTCAGAGCTGAACACCGGTTTCAAGAGCGCATTTCCACTCTCATAAAGCAAGAATCTGTGAAGTCTGAACTAGAAGACAATTCGGAATATTTGTGTGACGTTTGCGGCAAAAATTGCCCCTCTAGAGACCACCTGGGTAAACACAAGAGGGCTGTGCACGTGCAAGCGCCGTGTCCCGTTTGTGGGAAACTATTCAAACCGGCAACAATTAAAAGACACATGGAGGAAGTGCATGAAACGCTCCCTCAAGATAAATACAGGTGTGACATCTGTGGGTCCGAAAAGTCAACAAAAAGACGCCTGGAGCTCCACAAATCCAACGTACATGGAGTGAGGAATTGCCCCATTTGTAACAAAAAAATCCAAGGAACACTCTTGAAAGAGCACGTTCTTGAACATGATCCACCCAACCCAGAACTGGCAGACGTCGTGAAAAAGTTACTCGAAGACCACGACTGCGAAATTTGTGGCAAAAAATACTCGTCCCGGATTTTACTCAAACACCACAAGTACAGTGTTCATTTGAAAGGGAAGTGTCCGATTTGTGGCAAAGAGTTTAAAAAAGGGAATTTAAAAACGCACATTGCGCGTCACGAAGTAGAAAAGGCGCCTTCCTCCTCCAAGTACGTGTGCGACATTTGCGGGAAAAATAAATTCTCGCAGGCTGACTTAACCAAACACAAGTATAACGTCCACGTCAGGTCGGAGTGCCCCGTTTGTAAGAAAACCATCTCTCAAACCAACCTAAAGCGTCACATTGAGCGCCACAATGACCCCCAAACAGTGTGTGAACTGTGTGGAATCTCGGTCCTCCAACAAGATTTGAGATACCACATGAACAACGTGCACTCACTACAAAGGTACAAATGCGGTTTTTGCGATAAAGTCTTCAAGGGAAAATCGTCTAAAGTTGCGCACGAAAAGCGAGACCATTTAGGTGAAGCGGACTTCACGTGTGACACGTGTGGGAAAAGGTTTTTTAAGAACGTCAATCTGAAAAAGCACATTGAGAGTACCCACTTGAAAATGAGACCCCATATTTGCGAGTTTTGTAAAGTGGGGTTTTCGAGCAAATTCGCGCTTATCACGCACAGGAGGCAgcacaccaatgagagaccgttcaagtgtgaattttgcggagagggcttcCGACAAAAAGTGTCTTTGAAATCCCACTTGAAGTCGCAACACGACGTTGAAGAAGAACTGAACTGTGAGTGCAAGGAGTGTGGGAAGAAATTCGCGTCAAGTGCGGCGTTAATTTCACACGGAAGGATACACTAA
- Protein Sequence
- MHNESKIKNAPQTCRLCLALTTTSFSLIGNNGASGMLEALTSLKILPSDEISTVMCLKCCLNLKLAFTIQQNMLRAEHRFQERISTLIKQESVKSELEDNSEYLCDVCGKNCPSRDHLGKHKRAVHVQAPCPVCGKLFKPATIKRHMEEVHETLPQDKYRCDICGSEKSTKRRLELHKSNVHGVRNCPICNKKIQGTLLKEHVLEHDPPNPELADVVKKLLEDHDCEICGKKYSSRILLKHHKYSVHLKGKCPICGKEFKKGNLKTHIARHEVEKAPSSSKYVCDICGKNKFSQADLTKHKYNVHVRSECPVCKKTISQTNLKRHIERHNDPQTVCELCGISVLQQDLRYHMNNVHSLQRYKCGFCDKVFKGKSSKVAHEKRDHLGEADFTCDTCGKRFFKNVNLKKHIESTHLKMRPHICEFCKVGFSSKFALITHRRQHTNERPFKCEFCGEGFRQKVSLKSHLKSQHDVEEELNCECKECGKKFASSAALISHGRIH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -