Zmor017094.1
Basic Information
- Insect
- Zophobas morio
- Gene Symbol
- -
- Assembly
- GCA_027724725.1
- Location
- JALNTZ010000008.1:1376304-1383438[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.00037 0.022 16.3 0.8 2 23 180 202 180 202 0.97 2 21 3 1.8e+02 4.0 2.5 1 21 322 342 322 343 0.92 3 21 4.1 2.4e+02 3.6 5.6 1 23 372 395 372 395 0.92 4 21 0.75 45 5.9 0.1 6 19 406 419 402 422 0.91 5 21 0.13 8.1 8.3 0.1 1 23 428 451 428 451 0.90 6 21 5.4e-05 0.0032 19.0 1.0 2 23 531 552 530 552 0.97 7 21 1.3 77 5.2 0.9 1 19 566 583 566 587 0.72 8 21 0.00047 0.028 16.0 0.4 2 23 591 612 590 612 0.96 9 21 2.8e-05 0.0017 19.8 0.6 2 23 642 663 641 663 0.96 10 21 0.045 2.7 9.8 1.3 1 23 684 707 684 707 0.97 11 21 0.0013 0.077 14.6 0.8 2 23 721 742 720 742 0.97 12 21 8.9e-06 0.00054 21.4 6.3 1 23 773 795 773 795 0.98 13 21 0.13 7.8 8.3 1.9 3 23 812 833 812 833 0.92 14 21 0.00034 0.02 16.5 1.2 1 23 858 880 858 880 0.98 15 21 0.01 0.62 11.8 0.2 3 23 897 918 895 918 0.94 16 21 0.00013 0.008 17.7 0.3 2 23 937 958 936 958 0.93 17 21 0.088 5.3 8.9 0.1 1 23 985 1008 985 1008 0.94 18 21 0.041 2.4 9.9 1.8 2 23 1019 1040 1019 1040 0.97 19 21 0.011 0.65 11.7 0.2 3 23 1054 1075 1052 1075 0.96 20 21 0.0025 0.15 13.7 2.6 1 23 1081 1103 1081 1103 0.98 21 21 0.0066 0.4 12.4 0.1 1 23 1144 1167 1144 1167 0.94
Sequence Information
- Coding Sequence
- ATGTCGGAATCGCGAATGGCGAATTTCAGTTCGTGCTGCAGGCTGTGCTTGGCCGACTCCGTGGACAATCTAAAGTCGATTTTTGACGAAAGTGCAGACGATCGGGGCTTGCAGGGGAAGATTTCTTCATGTCTGGGAGTCGAGATCCTTCCCGACGACAAACTCTCCACCGGGGTCTGCCTTCCGTGCATCGAAAAAGTCACTAACTGGCAGACCTATAAACTTAATTGTTGCGAAAACCAGACCAAATTAGAGCATTGGCTCAGTTTGTCCAGCAGCACCGAGATCAGCATGACCAACGCCGCCGACCTTTCCGACGGGAATATCCAAATCAAAGAGGAACCCATCGACCACGAGTCTCTCACCCCCGAAGTGATCATCAACGGCGAATCGTCCTTGAAGAACGAACCCTTAGAAGAAGAATACAACGAACTTCCGCCCCCTCTGACCCCACAACGCACCGAAGACGGCGACGTGGAAGTCGTGGCCCACTCTCCTTCCTCCCAACTAACCAACGATGACGAGAACAACCCACGAAAGTGCAACTTTTGCGGCAAGTTCTTCGCGTCGGCCGGCAATCGCAAGAAGCACGAGCGGGTCATCCACGGAGCCAAGTCTTTCGGTTCCACCACCGAGTCAGAAGTCGGTTCGCTCAGTCAAGACGAAAGGTCGCAGAGTTCTATCGACTCCCATATGCTCAACGAGCTGCCGCACCAGTACGAAGAGCCCACTTCCGAAGAGAAGAAGATTCTGTTCGCGGCGGGGTTGAAGTTGTTACAGAGGAATTCGACTCCTCCGATTTCTTTGGAGAGTTTGTCGAGGATCGAGAACAGTTACATTGAGAAGTGCAAAGCGATGGTGAACATGCACAAGTCGATGAAGTGCGCTTGTCACAATGTCGTCCATCCGAACTTGAAGGGGTTGTTGTCGCATTTGAGGGCTTTGAGGATTTGGTTTCCGGTTTTCACGTGTTATCACTGTATGATAACTTTTACTGATAGATCGACGAGCACCAGGCACTATTTGCGTTGTCCGAGGACGAATCTAGAAACTTTGATTAAGTTGTCGAACTTGAAGAAACGCAGCGAAGTGAAGACTCGTCTGTACCAGAACTACAAGTGCACCCAGTGCAGGTTTATGTATTCGTTCCATGAAGATTTCTGTACGCACGTGGACGAAGACCACAGTCAGGTGGATCTTCCGTACAAGTGTTCCTGCGGGAGAGTTTTTACTTCACTGGAAGATTACAAAGACCATGCTTATATCAGTTGTTTGGTCGAATTTTATTGTGATATTTGTTTTGTCACGGTTAAGACTTTGGATGCGTTCCAGAAGCACGCTGCTGAAGTACATGATCACTCTGAAGGGTTTATTCTTCTTCAGGATGACAATTACAAACAGAGGAAGTACTCGCCGAATGTTACCAGAACGACGTACACGAGACAAAGCGTTAAACGCGAACACTCCGACGAAGGAAACATCGTCAGTGGAAAGAGGAGAAGTTCTTATAAACCTCCTATTCTAGAGTCGGAAGATTCTTCAGACGACAAAGTCATCAATCCAGTGTTTATGCAAAAGATTCCGGGCACTACGTGCCCGATTTGTTCGAAAGAGTACTCGAGCAATAATAACATGTGGAGACATTATAAGACGCACTTCCAAGAAGACACTGAAGAAGAAGTGGATGATTCTATTTATTGTTGTCCGGATTGCGGCGGCATGTTCAATACCCTCGAGTGGGAAAAACATAAAGGCATGCACAAAAAAAAGACGTGCGGCGAGTGCGGAAAAGTGTTCCAGTTCCAGTCGGAGCTCGATCAACATAGAAGCGTCCATTTGAATCTCAAACTATATAGAGATTCCAAGACGCAGAATTATAAGAGTACGATGATGAGTCCGAACGAACCTAGTAACATCGTGGTGATGTGTGAAGTCTGCGACCGAATGTTTACTTCGAAGGAACAACTTAAAGAGCACAAGCTCACTCATGAAACCATGCCGGTACTGGAATCCGCCGAGTCGGCCGAAGAGGAAGAAACCAAAAAGAAATTTTCGTGTAAATTGTGCGACAAGCACTATGCAGGGTACGCCGGTTTGTGGGACCACAATAGGAAGAAACACCCAGAGAACAAGCTCGGAGGCAGCGGCAACTTCCCCAAGAAGTGCAAATACTGCGACAAAGTCTTCGTCACAGGTGGTTCCTACTGGATGCACAAACAAATGCACGAAAGGAACAACCAGAAGAAGCAGTTGGAGCCGCCGCAGCTTCAAGTTTCCACGGAGGAAGAAACCAATGAAGACGACTCCGAGTCGTACCACACTTGCAAGCGCTGCTTCAAGGTGTTCTCCACGCGGTCGAATCTTAAAAACCACATGAAATCTCACGGAAGCCCAACCGCCAAAGCTACTAAAAAGATCACCAAAAAAGTCTGGTGCAACGTCTGTCATTGCGCTTTCGATAGCACCGCCAGCTTAGAGAGACACAAAGCCGAAGGTCACCACGCCGACGACGACGGCATGCCCACCCTCTCCGACGAGCAAAGCGAAGGCGACTTGAAACAACCCTTCGTTTTCACTTGCGACGTCTGTGTGCAGACCTTCACCACAAAAATAGCCCTGAAAAAGCACAAAGAGCGACACGCTAAAGAAGTCAGACCCATCGTCAAAAACAAGCAGACGGTGATCAACTGCAAGTATTGCAAGATCTTGTTCGCCACACCTTTGCAACTCGCCAACCATATGAAAGACGAGCACTTGGAGGAGTACAAACCCAACCAAAAGAAAGAGCGCACTGGAGCGAAGACTTCCAGCTGCAAACTATGCGGGAAGTCGTTCACTTCCATGTCGGCGCTGTACGCCCATCAAGGCTGGCACAAGCGCGGTAAGCTGGAGCCTAGCACCGATCAGTCGCTCGTGATGATCAAAGAGGAGCCCCGAGTGGAGACTCCGCAGCACCAGTGCTCCACGTGCGGCGCCGTTTTACCGAACGACACGGCGCTGCAAATCCACATTTTGGAGAAGCACAGGAACGTGAACGCGACGGTTCTTCCGGCGCGCTGCAAGATGTGCAATCTGGACTTTAGTTCGCAGGAGGAGTACGACCAGCATAAGCGGTTCCACGCGATGGTGGAGAAGCAGCCGAAGACGAAGACGTACGGCTGCACGCAGTGCCCGGCGGGATTCAGCAAAGCGGAGATGCTGAAGACGCACGTGAGGCAGTTCCATAGGGAACAGCAGGAGCATCGGTGTCACTTCTGTGACAGGGTGTTCGAGAAGGCGAATTCGTTGGGGATTCATCTGAAGGTGCACGAGAAGCAGAGGATGCTGACGGGGTCGACGAAAATACCGACGCCGAGTAAACCGGCGACGGTCACGCCGAAGGTTGTGTCGACGACGACGGTTAAGCCGGCGGCTGGAGGGAAGCCGCTGTATTCGTGCTCGATTTGTAATATGGGGTTCGATTTACCGAAGGATTTGAGGACGCATACGATTCAAGCACATCCGTTCTGA
- Protein Sequence
- MSESRMANFSSCCRLCLADSVDNLKSIFDESADDRGLQGKISSCLGVEILPDDKLSTGVCLPCIEKVTNWQTYKLNCCENQTKLEHWLSLSSSTEISMTNAADLSDGNIQIKEEPIDHESLTPEVIINGESSLKNEPLEEEYNELPPPLTPQRTEDGDVEVVAHSPSSQLTNDDENNPRKCNFCGKFFASAGNRKKHERVIHGAKSFGSTTESEVGSLSQDERSQSSIDSHMLNELPHQYEEPTSEEKKILFAAGLKLLQRNSTPPISLESLSRIENSYIEKCKAMVNMHKSMKCACHNVVHPNLKGLLSHLRALRIWFPVFTCYHCMITFTDRSTSTRHYLRCPRTNLETLIKLSNLKKRSEVKTRLYQNYKCTQCRFMYSFHEDFCTHVDEDHSQVDLPYKCSCGRVFTSLEDYKDHAYISCLVEFYCDICFVTVKTLDAFQKHAAEVHDHSEGFILLQDDNYKQRKYSPNVTRTTYTRQSVKREHSDEGNIVSGKRRSSYKPPILESEDSSDDKVINPVFMQKIPGTTCPICSKEYSSNNNMWRHYKTHFQEDTEEEVDDSIYCCPDCGGMFNTLEWEKHKGMHKKKTCGECGKVFQFQSELDQHRSVHLNLKLYRDSKTQNYKSTMMSPNEPSNIVVMCEVCDRMFTSKEQLKEHKLTHETMPVLESAESAEEEETKKKFSCKLCDKHYAGYAGLWDHNRKKHPENKLGGSGNFPKKCKYCDKVFVTGGSYWMHKQMHERNNQKKQLEPPQLQVSTEEETNEDDSESYHTCKRCFKVFSTRSNLKNHMKSHGSPTAKATKKITKKVWCNVCHCAFDSTASLERHKAEGHHADDDGMPTLSDEQSEGDLKQPFVFTCDVCVQTFTTKIALKKHKERHAKEVRPIVKNKQTVINCKYCKILFATPLQLANHMKDEHLEEYKPNQKKERTGAKTSSCKLCGKSFTSMSALYAHQGWHKRGKLEPSTDQSLVMIKEEPRVETPQHQCSTCGAVLPNDTALQIHILEKHRNVNATVLPARCKMCNLDFSSQEEYDQHKRFHAMVEKQPKTKTYGCTQCPAGFSKAEMLKTHVRQFHREQQEHRCHFCDRVFEKANSLGIHLKVHEKQRMLTGSTKIPTPSKPATVTPKVVSTTTVKPAAGGKPLYSCSICNMGFDLPKDLRTHTIQAHPF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -