Basic Information

Insect: Zophobas morio
Gene Symbol: -
Assembly: GCA_027724725.1
Location: JALNTZ010000002.1:19760122-19763390[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.053 3.2 9.5 0.4 1 23 149 172 149 172 0.91

2 15 0.001 0.063 14.9 3.6 1 20 177 196 177 200 0.88

3 15 1.2 71 5.3 5.2 1 23 206 229 206 229 0.94

4 15 0.0018 0.11 14.2 0.4 1 23 235 257 235 257 0.96

5 15 0.0002 0.012 17.1 1.1 1 23 263 286 263 286 0.98

6 15 8.1e-05 0.0049 18.4 4.7 1 23 297 319 297 319 0.97

7 15 7.8e-06 0.00047 21.6 1.2 3 23 327 347 326 347 0.98

8 15 9.5e-05 0.0057 18.2 2.5 1 23 353 375 353 375 0.97

9 15 5.6e-05 0.0033 18.9 6.3 1 23 381 403 381 403 0.97

10 15 0.0013 0.078 14.6 0.4 1 23 409 432 409 432 0.98

11 15 0.0021 0.13 13.9 0.3 3 23 447 467 445 467 0.96

12 15 9.7e-06 0.00058 21.3 1.1 3 23 530 550 529 550 0.99

13 15 3.5e-06 0.00021 22.7 2.3 1 23 556 578 556 578 0.98

14 15 1.1e-05 0.00064 21.2 1.4 1 23 584 606 584 606 0.98

15 15 0.00012 0.0074 17.8 1.4 1 23 612 635 612 635 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.053	3.2	9.5	0.4	1	23	149	172	149	172	0.91
2	15	0.001	0.063	14.9	3.6	1	20	177	196	177	200	0.88
3	15	1.2	71	5.3	5.2	1	23	206	229	206	229	0.94
4	15	0.0018	0.11	14.2	0.4	1	23	235	257	235	257	0.96
5	15	0.0002	0.012	17.1	1.1	1	23	263	286	263	286	0.98
6	15	8.1e-05	0.0049	18.4	4.7	1	23	297	319	297	319	0.97
7	15	7.8e-06	0.00047	21.6	1.2	3	23	327	347	326	347	0.98
8	15	9.5e-05	0.0057	18.2	2.5	1	23	353	375	353	375	0.97
9	15	5.6e-05	0.0033	18.9	6.3	1	23	381	403	381	403	0.97
10	15	0.0013	0.078	14.6	0.4	1	23	409	432	409	432	0.98
11	15	0.0021	0.13	13.9	0.3	3	23	447	467	445	467	0.96
12	15	9.7e-06	0.00058	21.3	1.1	3	23	530	550	529	550	0.99
13	15	3.5e-06	0.00021	22.7	2.3	1	23	556	578	556	578	0.98
14	15	1.1e-05	0.00064	21.2	1.4	1	23	584	606	584	606	0.98
15	15	0.00012	0.0074	17.8	1.4	1	23	612	635	612	635	0.97

Sequence Information

Coding Sequence: ATGTACATCATAACCATCTTCAAAAGCATCAGTTATATCACTAATAAATGTAATAAGATTAGTCTGCGTAGATCTGCCAGCATAAAAGCCATGTTGAGACTCAATGATAATATTCTTAAAGGAATGACATTCTTTCTGGAGCAGATGTTGAAATGTAAATTACCAGAAGTAGATGTAATACCAGTTAATCAACAGTTGCACTTCCAACCCACCAAAGCAAAATATAAACAAACCACCTACAAGAACCCTTTCGTGTACACAAACCTCAAACCTAAGAATCGGAAACTTAAGAAAAACACGCCCAAAGAAAACAAAAGCATCAAATGGGCTTGCATGATCTGCTCCGACGTCAAAGAAGACAAACAATCCCTAATCGAACATTACGAGTTTCACAAAAACGAAACCGAAAGTCTAGGACTAGGTGACCACTCCAGTGGTGACTACTTTCTATGTCCAGTCTGTCTAACCGACTTTACTTCATTAAAAAGTTACGAAAAGCACGTAGAAAATCAACACGGTGAGAAACACTTCGCTTGCGATGAATGCAACAAGTTTTTCAAAAACTCCTATCAATTGTGTGTTCACAACTTCAACGTGCACGCTAGTGATGAAATTTATAGATGTGTCCACTGCAACTTCACCACTAAACACTTGAAGTCTTTGCGACCGCATCTAAAAGCGAAACACGAAGACGAGTTTAAGTTTAGATGTGATATATGTAATCGTGGATTTGCTTCAGCTACTTGGTACGAAGAGCACAAAAACTTCCACACTGGTGCTATGCCCTTTGAGTGTGAAATTTGCTTTAAGAGTTTTCCCTACACGAGATACCTTATCGCTCACAAGAAAACTATGCATCCAGACGTACAGTCGGTGATCCCAGCTACCCATGAGTGTGAAATTTGTCATAAGAGGTTCGCTCATAAGAAGAGTCTTGTTTTGCACATCAGGGGACACACTGGAGAAAACACAGTTCTGTGTGAAATGTGTGGCAAGAGTTTGTCTAGTTCTGAACACTTGAAACAGCACATAAGGATCCATACTGGGTACAAACCCCATATTTGTTCCGTCTGTGGGAAAGGGTTTGCTAAAAAGTGTAATCTCACACTGCACGAGAGGGTACATAGTGGAGAAAAACCGTATTGTTGCATGACTTGCGGAAAGTGTTTTTCACAAAGATCGACACTTGTCATTCACCAAAGATATCATACTGGAGAGAGGCCTTACGTGTGTCACCTATGTAATAGGGGGTTTGTTGCCAAAGGACTTCTGGGAGTACATTTAAAAACGTCACATTGGGACGAATTAGTCAACGTTAAGAATGAAACACCATGGGCTTGTTCCCTATGCGGAAACTACTACTCTTCTAAAAGAAGTCTTCGAAGCCATATAAACTGGCACGGTCGTACCAAGAAATCACATACGATTAAACCCAGAGAACTCACTACTATAACCCTTGAAGATTCCAGTAGTGAGTCACAAAACTCCACCGAAAGCGGCAGCGTCTACTCACCTGATATTTTCGACGAATTAAGTGACGACGATTCCAAAAAACCCAAAGTCAAAAAAGGACCGAAACGTGTTTTGTGTGAAATCTGCGGCAACGATTTTTCGTCGAAAGATCATTTGCGCTTGCATATGAGAATTCATACCAACACTAGGCCTTTTGTTTGCACCATGTGTGGAAAAAGTTTTCGTCGTCAATGTGGTCTTCGAGAACACGAGAGGATTCATACGGGCGAAAGACCGTACCAGTGCGATGTATGTGGAAAATGCTTCACACAAAGAACACCTTTGGTGGTACATAAGAGAGGTCACAGTGGTGAGAAACCGTTTGAGTGTTATTTGTGCAACAAGAAATTTGTTTCTAAAGGGCAGGTAAGGATTCATATGAAGAATACTCATGGTGAACCATGGAAATGA
Protein Sequence: MYIITIFKSISYITNKCNKISLRRSASIKAMLRLNDNILKGMTFFLEQMLKCKLPEVDVIPVNQQLHFQPTKAKYKQTTYKNPFVYTNLKPKNRKLKKNTPKENKSIKWACMICSDVKEDKQSLIEHYEFHKNETESLGLGDHSSGDYFLCPVCLTDFTSLKSYEKHVENQHGEKHFACDECNKFFKNSYQLCVHNFNVHASDEIYRCVHCNFTTKHLKSLRPHLKAKHEDEFKFRCDICNRGFASATWYEEHKNFHTGAMPFECEICFKSFPYTRYLIAHKKTMHPDVQSVIPATHECEICHKRFAHKKSLVLHIRGHTGENTVLCEMCGKSLSSSEHLKQHIRIHTGYKPHICSVCGKGFAKKCNLTLHERVHSGEKPYCCMTCGKCFSQRSTLVIHQRYHTGERPYVCHLCNRGFVAKGLLGVHLKTSHWDELVNVKNETPWACSLCGNYYSSKRSLRSHINWHGRTKKSHTIKPRELTTITLEDSSSESQNSTESGSVYSPDIFDELSDDDSKKPKVKKGPKRVLCEICGNDFSSKDHLRLHMRIHTNTRPFVCTMCGKSFRRQCGLREHERIHTGERPYQCDVCGKCFTQRTPLVVHKRGHSGEKPFECYLCNKKFVSKGQVRIHMKNTHGEPWK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -