Zmor029433.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Zophobas morio
Gene Symbol
-
Assembly
GCA_027724725.1
Location
JALNTZ010000002.1:19697432-19701065[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 25 2.7 1.6e+02 4.2 0.7 1 19 81 99 81 99 0.95
2 25 3.7e-06 0.00022 22.6 1.7 1 23 110 132 110 132 0.97
3 25 0.0016 0.098 14.3 1.1 1 23 137 160 137 160 0.94
4 25 0.2 12 7.7 0.8 1 23 172 195 172 195 0.97
5 25 0.00019 0.011 17.2 5.3 3 23 203 223 202 223 0.98
6 25 0.0014 0.085 14.5 1.5 3 23 231 252 229 252 0.95
7 25 0.00018 0.011 17.3 3.7 1 23 257 279 257 279 0.97
8 25 3.9 2.4e+02 3.7 1.4 1 8 285 292 285 293 0.91
9 25 1.5 88 5.0 0.1 3 23 367 387 365 387 0.93
10 25 4 2.4e+02 3.6 4.4 1 23 393 415 393 415 0.97
11 25 0.014 0.86 11.3 1.9 1 23 421 443 421 443 0.91
12 25 0.0003 0.018 16.6 4.0 1 23 449 472 449 472 0.98
13 25 0.00082 0.049 15.3 3.3 1 23 484 507 484 507 0.95
14 25 0.012 0.71 11.6 3.8 3 23 518 538 517 538 0.99
15 25 2.7e-06 0.00016 23.1 0.4 3 23 546 566 544 566 0.97
16 25 7.5e-06 0.00045 21.7 0.9 1 23 572 594 572 594 0.98
17 25 0.65 39 6.1 0.2 2 23 687 708 686 708 0.91
18 25 0.0049 0.29 12.8 0.4 1 23 743 765 743 765 0.96
19 25 0.081 4.9 9.0 1.7 1 23 770 792 770 792 0.93
20 25 0.075 4.5 9.1 3.4 1 23 798 820 798 820 0.97
21 25 0.22 13 7.6 2.4 1 23 826 848 826 848 0.96
22 25 6.3e-05 0.0038 18.8 3.5 1 23 854 877 854 878 0.94
23 25 3.9e-05 0.0023 19.4 2.1 1 23 888 911 888 911 0.97
24 25 0.00011 0.0066 18.0 0.6 2 23 920 941 919 941 0.97
25 25 0.0023 0.14 13.8 2.6 3 23 949 969 948 970 0.94

Sequence Information

Coding Sequence
ATGTTAACGTTTTGTTTTATTTTTGGTAGTTGCCTGTCTAAAGTTTTATCTCTTGCTAATTTTGAAATTTTCAGATTTGGCATTTCGCTACCAAACGGAATTATTCTAAAGAAAGTAGAACATTCTAGACCAACTAAAAATAATGTCCGGGTGGTACTAAATCCCAAAAATTACGTTCCTGAAGCAAGAATAGCTCTGAAGAAACCTCATTCAACCACGACCAAAATTAAAAACAAACAGTACATTTGCACTAAATGTAACAATCTGTTTTCAACTTTTCTACAATTAACCCTCCATGATGTTACATGCGTAAAGGAAAAGTATCCCCATGTTTGCAAATACTGTGATAAAGTCTTTACATATTGGAATAGTTTGAAAGTGCATTTAGCGCGTCACGAAAATCAGGAATATTGTTGCGAAAAATGTGGCCGAGTTTTCAGCAACCCGGAAACAAAAGAGATCCACTCGAGTACAGCACATACACCATATTTCGACGAAAGTTCCAGCGGAGGGTTTCAGTGCAAATCATGCGATGTCAAAACCCAAAATAAAGCCACAATGATTAATCACGTCAATTCCACCCATCAAGTTATCACTGCCAGTTTATGTGACATATGCGGCAAATGTTTTAGTAATCATAACAAGTTGCTTCGACACAGAAAAGTGCATAACGACGAAACGCCTTTTGGGTGTCGACAGTGTTTGAAGCGTTTTAAAAACAAAAGTTCTTTGACGACTCATGTTCTGAGTGTTCACGAAAAACGAATTTTCATCTGTGAACAGTGTGGACGAAGTTTTAAAAAGAAATTTAGTTTGGAATCTCACCATAAAGAACATGCAGGCGACTACGCTTTTCAGTGTCATATTTGTGACAAGAAGGAAACATCTTTGTTAAAGAAACTAATTTGTGGCCCGTCTATTTCCATAACTCCGATTGGAAACCGGCTCAAGGTAACCAGAAAGCGCAGGAAAAACACACTAAACATTTTAACCAAAGACCAAGAGTTAATCGTAGAAATGGTGGATTCAAGTGCAGACATTAAATTGGAGCCTCAGTCTCCCACTAGTACGAAACCGCCATCCACTGAAGCTGTACATTGTGATGCTTGTGATGAAACATACCCTAACAGCGTCGCTTTCGCTTTACATTCGATTGTACACAACTCCGACAATAAGTATTCTTGTCATTTTTGTAACTATCGGAATGCTTCCAAGTACCACATCGAAATGCACATTAAAGCTCATGAAGGTACCACCAAGTACAAATGCGAGATTTGTCAAAAAGCTTTTACTGTTAGTACTCATGCTATCGAACACAAGTACTTCCATACTGGCGAGAAACCCTTCAAGTGCGAAATATGCGGAAAACACTTCATGTTCTCTTGGTTTCTGACATCACATCGTCGCACCCAACACTGGGAAATAATGACTGGTACTCCGTTGGTTAAGTACGACTGTACTATCTGCAACAAACATTATACTTCCTCAACTGGGCTAAGAAGGCACAATATGAGCAAGCACAATGATAGCGGAGTAGACTTTTCGGTACtctgtgacatctgcggcaaatgcttgtctagcaaagaaaaactgaagttccataggagaacccacactggttataaacctttcggttgtgtaatctgtggcaagagtttttcacgcaaggagcaactgaaggaacacgagagggtacataccggtgaaaaacccttcatttgcaaattttgtggaaaagggttcacacagagatcgcctttaagaattcacgaacgaactcatacaggggaacgtccatatatttgtagaatttgcgggaaaggGATATATAAAACGGAACCATACGGTTGTCAAGAAATCACAGTGATTACTATTGACGGTGACAATGAAGTGCTTGTCAGCATCCCTACGGAGGACCTTACCACTGTTAAACCCAAGCCAACTAAAGCCAAACCTAAACACACCACGAAACAAACTATTTTAGAACCTGTCACCACTGGAACAACCGAGCCATCGTCTTCTGACAAAGTTCCAGGAATAAAGAAACGCGACCGAGTCGTATGCCACGAGTGCGGTATTTTAGTAACTTGGGACTACTTATCCACCCACATGTACGAGATGCACTACTACATGTCAGACCTCGAATCACCCAGCGTTCTTTGTTCGGAATGTGGTACCCTTTGCAAGAACAAACGTGCTCATGCCAACCACGTAAGAATACATTCATTCTACTGTACCCAGTGTCCTTCCGTTTTCAAATCAGAGAACGATTTAGTCAAACATTCACTCGTACACACCAAAAAGCAGTACGAATGTAATAAATGCGACTTGAGCTTTGATGACTGTTACGTTTTCATTCTCCACAATGAAAGTCATGATGCTTCTGGTAACTTCAGTTGTGTGAAGTGTAACTACGTTACTGGTAGCTGTTCATCAATGAAGAGACACTTGCAGCAACATGGGGGGCGTACTGTTCACACTTGCGATATATGCAGCAGGAAGTTCTTCGGAAAGACGAGGTTTGATGCTCACATGGAGTTGCATGCGGGGATTCCGAAGTATAGTTGTGAGTACTGTCCGAAGAAATTCTCTACGAAGAATTACTTGAAGGTGCACCGAGAGTTGAACCACCATAAAGAATTGTATGGGTATGAAATGAGCTATTCCTGTCGCGAGTGTGGGAGGAAATTTAAGTTCGAAACGAGTTTGAAGAGGCATTTGAGTACTATACATAAAATTGGAGAAGATAGGACTGTAACGTGTAAGATTTGTTATAAGAAGATTGCGAATAATTATAATTTGAGAGTTCATATGAGGTTGCATACAGGAGAAAAGACGAATATGTGTGAAAGTTGTGGAAAGGCTTATTCTACGTATAAGTCGTATAAGAAACATGTTTTGAAGCACCACCCAAACGTGGAGCCTGTGCCCAAAACTCAGCCAAAGAGTTTACAATTAGGAAAAGGAGTAACATGTTAA
Protein Sequence
MLTFCFIFGSCLSKVLSLANFEIFRFGISLPNGIILKKVEHSRPTKNNVRVVLNPKNYVPEARIALKKPHSTTTKIKNKQYICTKCNNLFSTFLQLTLHDVTCVKEKYPHVCKYCDKVFTYWNSLKVHLARHENQEYCCEKCGRVFSNPETKEIHSSTAHTPYFDESSSGGFQCKSCDVKTQNKATMINHVNSTHQVITASLCDICGKCFSNHNKLLRHRKVHNDETPFGCRQCLKRFKNKSSLTTHVLSVHEKRIFICEQCGRSFKKKFSLESHHKEHAGDYAFQCHICDKKETSLLKKLICGPSISITPIGNRLKVTRKRRKNTLNILTKDQELIVEMVDSSADIKLEPQSPTSTKPPSTEAVHCDACDETYPNSVAFALHSIVHNSDNKYSCHFCNYRNASKYHIEMHIKAHEGTTKYKCEICQKAFTVSTHAIEHKYFHTGEKPFKCEICGKHFMFSWFLTSHRRTQHWEIMTGTPLVKYDCTICNKHYTSSTGLRRHNMSKHNDSGVDFSVLCDICGKCLSSKEKLKFHRRTHTGYKPFGCVICGKSFSRKEQLKEHERVHTGEKPFICKFCGKGFTQRSPLRIHERTHTGERPYICRICGKGIYKTEPYGCQEITVITIDGDNEVLVSIPTEDLTTVKPKPTKAKPKHTTKQTILEPVTTGTTEPSSSDKVPGIKKRDRVVCHECGILVTWDYLSTHMYEMHYYMSDLESPSVLCSECGTLCKNKRAHANHVRIHSFYCTQCPSVFKSENDLVKHSLVHTKKQYECNKCDLSFDDCYVFILHNESHDASGNFSCVKCNYVTGSCSSMKRHLQQHGGRTVHTCDICSRKFFGKTRFDAHMELHAGIPKYSCEYCPKKFSTKNYLKVHRELNHHKELYGYEMSYSCRECGRKFKFETSLKRHLSTIHKIGEDRTVTCKICYKKIANNYNLRVHMRLHTGEKTNMCESCGKAYSTYKSYKKHVLKHHPNVEPVPKTQPKSLQLGKGVTC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-