Zmor029436.1
Basic Information
- Insect
- Zophobas morio
- Gene Symbol
- -
- Assembly
- GCA_027724725.1
- Location
- JALNTZ010000002.1:19711472-19719992[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 28 1.3 75 5.2 0.6 3 23 22 43 21 43 0.93 2 28 1.1 66 5.4 0.8 1 23 49 72 49 72 0.90 3 28 0.0048 0.29 12.8 1.2 1 23 78 101 78 101 0.95 4 28 0.0011 0.066 14.9 5.8 1 23 106 128 106 128 0.98 5 28 0.00087 0.052 15.2 1.9 1 23 136 158 136 158 0.98 6 28 0.00023 0.014 17.0 0.5 1 23 165 187 165 187 0.97 7 28 8.4e-05 0.005 18.4 0.1 1 23 192 214 192 214 0.98 8 28 0.00026 0.015 16.8 0.6 1 23 220 242 220 242 0.98 9 28 0.012 0.74 11.6 1.3 2 23 298 320 297 320 0.95 10 28 0.0068 0.41 12.4 2.5 1 23 326 349 326 349 0.97 11 28 2.9e-06 0.00017 23.0 2.7 1 23 354 376 354 376 0.98 12 28 0.34 21 7.0 0.9 2 23 396 417 395 417 0.96 13 28 7.7e-05 0.0046 18.5 0.0 1 23 423 445 423 445 0.98 14 28 0.13 7.5 8.4 0.7 1 23 470 492 470 492 0.97 15 28 0.00044 0.026 16.1 1.8 1 23 497 520 497 520 0.96 16 28 0.0093 0.56 11.9 0.5 1 20 526 545 526 549 0.89 17 28 0.0034 0.21 13.3 0.1 1 23 555 578 555 578 0.96 18 28 0.0013 0.078 14.6 0.5 1 23 583 605 583 605 0.96 19 28 0.96 58 5.6 4.1 1 23 614 636 614 636 0.97 20 28 2.7e-05 0.0016 19.9 0.3 1 23 643 665 643 665 0.98 21 28 1.5e-05 0.00091 20.7 0.6 1 23 671 693 671 693 0.97 22 28 0.18 11 7.9 0.8 1 20 707 726 707 727 0.93 23 28 9.7 5.8e+02 2.4 0.8 1 23 734 756 734 756 0.93 24 28 1.4 83 5.1 1.1 1 21 899 919 899 920 0.95 25 28 0.013 0.79 11.5 0.5 2 23 927 949 927 949 0.94 26 28 0.02 1.2 10.9 1.7 3 23 955 975 954 975 0.97 27 28 0.012 0.74 11.5 4.1 1 23 981 1004 981 1004 0.96 28 28 7e-05 0.0042 18.6 2.5 1 23 1009 1031 1009 1031 0.98
Sequence Information
- Coding Sequence
- ATGTTCGCAAAAAGAACGGCATACATCCAACACCTCAGAAGGCACCAAGAGAGGACTATTCTGTGCGATCTTTGCGGCTTGTTTTCTCAATCACGCTGTGCACTGGAGCGCCACATCGCCGCTCGTCATGAAAATAAACGCCCTTTTCAGTGCAACATGTGCAGCTATAAAGGAAACACGAAAGCAGCCCTTAACTGTCACATCATCGCCATGCATACGAAAAATTACCCTTTCAAATGTGACACATGCGACAAAGGATTTCTTTCGAGATCAACTTTGATGACTCACAAGGAATCTGATCATGAAGGTCTTCATTTCGTATGTCACATCTGCAAGAAAATTTTCAAGAATAAGCAACATTTTGGCGTGCATGTGAAGAAACATTCAGTTGAACCCAAGGACCAACATACTTGCGAGCTTTGTTCGAAGAAATTTGATCTTGAAGTGGATTTACAGAGACATGTGAGAAGACATGTAAAACTAGATGAGTCGCACGTTTGTGATATTTGTGGGAAAATTTATGCTAGTTCTGCTAAACTCTCGTCTCATAAGAAGATACACGGAAGCAAAGGGTATATTTGTGATAAGTGTGGAAAAGCGTTTAGTAAAGGTGGACTGTTAAGTCTCCATCTTCGAATCCATACTCAGGAAAAACCATACAAGTGCTCGGTGTGTGGAAAGTGTTTTGCGGGGCGACCTAGTATTAGAATCCACGAAAGAATTCATACCGGACAGAGACCTTATCCTTGCGAGATTTGTACGAAAAGGTGCGTTAAAGAAGAACCTCAAGAAAACTCCAAGCAAGACGAATCTAATTTTGCTTCATGTTCAGATACATCCGGACAACCTCCACTATTATCGTCGTTCCCACATCTTCAGCAGTCTTTATTGTCATGTACTTACTGCACATACTCAACCAAAAAACAAGTGAATCTCGACAACCATATCACATCTTTCCACACAAAAAACTATCGTTTCAACTGCGAAGTATGCGGCATGGGTTTCGTTTCGCATCACCGACTCAACTACCATCGAAGAATAGAACACGAAGATCTCCGTTTTCCATGCAAGCACTGTGGAAAAGTGTTCAAATACCAAGAATCTCTGTCTTACCACATAAAAATGCACAAACCCAACTACACCAAGAAGAGAAAAATCAGAGACATATCCAACCGAGAACCCTGCGTTTGCCAGCTCTGTAATAAAATTTTAGGCTCGAAAATTATCCTCCAGAACCACATGCGTTTGCACACAAATCCTCAGTCTTTCGTGTGTGACATCTGTGGCAAGGTTTTAGCCACGAACGTTAGCTTGGTTAACCACAGGAAGATACACACGGGCGAAAAAGAAAAATTCCATTGTGATGTCTGTGGCAAGTTGAATTCGAGCCACAAAAACGTTGTCAATTACATTTGTGAAGTTTGCGCCAAATTGTTTGATAGCTACAAGACATTCGCAAAGCACGTATACCGACATCGCGAAAAAACACATCAGTGTGTCGTTTGTGACAAGCTGTTCGTCCAGAAACACGATTTAGTGACCCACATGGAAATAAGACACTTCAATATTGACAGCTTCATCTGCAGTTACTGCGATTTTAGCACTTCTTCATACAGTGACCTCGAAGATCACAAAGTGGCTAATCATACAAAGGACTACCCATTTCGATGTGAGAATTGTGATGCCGGGTTTGTGAAAAGAGCTGATCTGGAGACGCATAACAAAGTCGAGCATGAAGGATTGCGTTTCATTTGTAAGACCTGTGGGCGCATATTTAAGACCAAAATCGCCTGGAAAGAGCACGAAGAAAAGCACGAACCTAACTACGTTGCGAAAAATTATACATGCAATTTGTGCTCGAAGGTGTTGCATACCAGAATAGGTTACTATAGACACAAAAAGCAGCATAATGCAGGCAAAAGAAATTTCGTGTGTGAAGTGTGTGGTAAGACTTTGGCTTCGTTAGACAACTTACGCCAGCATAAAAAGAGCCACACTGGTGAAAGGAACCACGTTTGCGAAACTTGTGGAAAAGCTTTCGCCAAGCGAGAATGGTTAGTGAAGCATTATAGAGTTCACACGAAGGAAAAACCATCCGAAGAAGACTCGGGTGTGAGTTACCTGTGTAACATATGTACGCAACAGTTTCCCGACAAGGAAAAGTTCTTGCAACACCACGTGGACGAATCCGGCCAATGTTTTGCCTGTTGCAAGTGTGACAGTAATTTTGAAGCGATCACTGAATTGTACTCTCATCTAGAAGAGCACTCTTCCGAATCCGTTACAAATGAAGATAACGAAACTGTAGAAGAAATTATTCTCAATTGTGACAATGAACAAGAAATTGATGATGCAAGTGAACTTTTATACATTTTAGATGATTCGCAGTGCGCCAGTGAAGTTGTCATAGAAGAAGACATACCAAGTCAGCCAACTAAAACTAAAAAAGTTGACAAATATAGAATAGTTCAACTAGAACACGGCTACGTTATACCAAATACCGAAGAGCAAGAAGTTGAAGAAGAGACGGTCATTTTGAACGGGAAGCAAAAGATTTTCCAACCTTCAACCAGCAAACTTGTTTATCAGCCTAGACCGAGGGCACCCCAACCAAAACGACGTCATATCGTGCCAGATTTTTCTGCTGCAAACTATTTGTATGTCACTGCAAACGATGAGGTGGATATCGCTCACTATAAGTGTTTACGTTGCGAGCAACTGTTTATCAATAAATTTGTTTTCTTCCGTCACATTGAGAAAGGAAAATGCTATATTAATAGCTGCGATGTGTGCAATGCCACTTTTACTAAAAACAGTGATTTCTACTACCATTATACAGTCGAACATACGGATAGAGCGATTTGTAACTTCTGCTTCAGGACTTTTATGTATGAGAAGAATGTGAAAGAGCACATGATGAGACATTTGGACCAATTTAGGCATAGGTGTGACGAATGCAATAAAGGGTTTTATACTGTGAGGGAATATAGAAATCATTATAAGAACAGACATATGGGGATTAGGCACAAATGTTCTGTTTGTAGCAGGAGCTTTGCTGATGAGTACTACTTTAGACGGCATATTGCCACTCATGAGCAGACCGCTGTAGTTATAGAGTAA
- Protein Sequence
- MFAKRTAYIQHLRRHQERTILCDLCGLFSQSRCALERHIAARHENKRPFQCNMCSYKGNTKAALNCHIIAMHTKNYPFKCDTCDKGFLSRSTLMTHKESDHEGLHFVCHICKKIFKNKQHFGVHVKKHSVEPKDQHTCELCSKKFDLEVDLQRHVRRHVKLDESHVCDICGKIYASSAKLSSHKKIHGSKGYICDKCGKAFSKGGLLSLHLRIHTQEKPYKCSVCGKCFAGRPSIRIHERIHTGQRPYPCEICTKRCVKEEPQENSKQDESNFASCSDTSGQPPLLSSFPHLQQSLLSCTYCTYSTKKQVNLDNHITSFHTKNYRFNCEVCGMGFVSHHRLNYHRRIEHEDLRFPCKHCGKVFKYQESLSYHIKMHKPNYTKKRKIRDISNREPCVCQLCNKILGSKIILQNHMRLHTNPQSFVCDICGKVLATNVSLVNHRKIHTGEKEKFHCDVCGKLNSSHKNVVNYICEVCAKLFDSYKTFAKHVYRHREKTHQCVVCDKLFVQKHDLVTHMEIRHFNIDSFICSYCDFSTSSYSDLEDHKVANHTKDYPFRCENCDAGFVKRADLETHNKVEHEGLRFICKTCGRIFKTKIAWKEHEEKHEPNYVAKNYTCNLCSKVLHTRIGYYRHKKQHNAGKRNFVCEVCGKTLASLDNLRQHKKSHTGERNHVCETCGKAFAKREWLVKHYRVHTKEKPSEEDSGVSYLCNICTQQFPDKEKFLQHHVDESGQCFACCKCDSNFEAITELYSHLEEHSSESVTNEDNETVEEIILNCDNEQEIDDASELLYILDDSQCASEVVIEEDIPSQPTKTKKVDKYRIVQLEHGYVIPNTEEQEVEEETVILNGKQKIFQPSTSKLVYQPRPRAPQPKRRHIVPDFSAANYLYVTANDEVDIAHYKCLRCEQLFINKFVFFRHIEKGKCYINSCDVCNATFTKNSDFYYHYTVEHTDRAICNFCFRTFMYEKNVKEHMMRHLDQFRHRCDECNKGFYTVREYRNHYKNRHMGIRHKCSVCSRSFADEYYFRRHIATHEQTAVVIE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -