Zmor029438.1
Basic Information
- Insect
- Zophobas morio
- Gene Symbol
- CG12744
- Assembly
- GCA_027724725.1
- Location
- JALNTZ010000002.1:19726303-19744307[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 32 6 3.6e+02 3.1 2.4 1 23 10 32 10 32 0.88 2 32 0.99 59 5.6 0.3 2 23 38 61 37 61 0.96 3 32 0.0042 0.25 13.0 0.1 2 23 69 90 68 90 0.96 4 32 3.4e-05 0.002 19.6 0.7 1 23 97 120 97 120 0.96 5 32 0.0011 0.065 14.9 0.1 2 23 126 147 125 147 0.95 6 32 3.3e-05 0.002 19.6 2.8 1 23 153 175 153 175 0.98 7 32 4.2e-05 0.0025 19.3 4.3 1 23 181 204 181 204 0.97 8 32 0.0008 0.048 15.3 1.1 2 23 210 232 209 232 0.95 9 32 0.2 12 7.7 0.3 2 23 257 279 256 279 0.89 10 32 0.00015 0.0092 17.5 5.4 1 23 284 307 284 307 0.94 11 32 0.0019 0.12 14.1 3.2 1 23 313 335 313 335 0.97 12 32 0.00089 0.054 15.1 1.3 2 23 342 363 341 363 0.96 13 32 0.054 3.2 9.5 5.8 1 23 368 390 368 390 0.98 14 32 0.41 24 6.8 0.2 1 23 399 422 399 422 0.96 15 32 0.0078 0.47 12.2 2.2 1 23 429 451 429 451 0.96 16 32 8.5e-06 0.00051 21.5 0.9 1 23 457 479 457 479 0.98 17 32 3.9e-05 0.0024 19.4 2.1 1 23 485 508 485 508 0.96 18 32 0.00024 0.014 16.9 0.3 3 23 515 535 513 535 0.96 19 32 8.8e-05 0.0053 18.3 2.6 1 23 541 563 541 563 0.98 20 32 0.0003 0.018 16.6 0.5 1 23 569 592 569 592 0.95 21 32 0.0044 0.27 12.9 3.3 3 23 651 672 650 672 0.96 22 32 0.00015 0.0089 17.6 1.7 2 23 678 699 677 699 0.95 23 32 0.079 4.7 9.0 0.1 1 23 705 727 705 727 0.98 24 32 2.3e-06 0.00014 23.3 0.4 2 23 734 755 733 755 0.96 25 32 1.6e-06 9.8e-05 23.7 1.3 1 23 760 782 760 782 0.98 26 32 0.0002 0.012 17.1 0.6 1 23 791 814 791 814 0.95 27 32 0.0096 0.58 11.9 1.6 1 23 821 843 821 843 0.96 28 32 4.5e-06 0.00027 22.4 4.6 1 23 849 871 849 871 0.99 29 32 0.0003 0.018 16.6 1.8 1 23 877 899 877 900 0.95 30 32 0.24 14 7.5 0.8 3 23 907 927 905 927 0.95 31 32 0.034 2 10.2 10.0 1 23 933 955 933 955 0.97 32 32 0.00032 0.019 16.5 0.3 1 23 961 984 961 984 0.96
Sequence Information
- Coding Sequence
- ATGGAATTGCACGAAAACAGCGACAAGTATTTCTGCACCATCTGCCAAAAAAATTTAAAAAGCACATACGAATCAAAAAGACACGAATTTCTTCACTCAATCCAAGGAAAAAAATGTCCTCGTTGTGATTTAATTTACAATTTTACTACTGTGGCAGCGTATTATGCCCATCAACAAAAGCATGATAACAGTTTTTCACAAGTGGTATGCGAAGTATGTGGCAAGATGTTTGCAGGAATGCAAAAACTTAAGTTGCATAGTAGGGTTCATAAATACGCAGATCGGACTTACGCTTGTCCCATCTGTGACAAGATTTTTAGATCTTCAAGTGGATTTCTCCATCACAAGAACGTTGAACATCTTGGTAAAAAAACTGTGTGCGAGATTTGCGGCAAGGAGTTGTCTAGTCTTCAGAGTTTGAAAGTCCATATGGCTTTTCATTCAGGGGACAGGCCACATACGTGCGGTGTTTGTGGTAAAGCATTTAGGTATGTTAAAGATTTGAAACATCATCTCAGAATACACAACAACGACAAACCGTTTGAATGTAAATACTGTGATAAGAAATTTAGGAGCACGTCACATCTTGTTCTTCATACCAAACGCATTCATGAAGAGAGAGATATTCATTGCGAGATTTGCGAAAAATCGTTTGTTTGGCCGGCTCATTTGCGAAGACATTTGCGACAAGTACACAAAATGAAATTGGGGGAACTCCCGATCAAAACGGAAAATGCTCAAAAAAGCCCGAAAGCACCCAGACGATTGTCTTGCAAAATTTGCAAAGAAGAATTTCCCAACGTTTTATTCCTACGTCGCCACAAAATAGATATTCACCATCTGGGAAAATTCGCCTGCCCCGTTTGCAAAAAACATTTCAAACATCGTTCCACTCTGAAAAAACATAGAGACGTGCAACACGGAGGCGGCAAACTATTCTACTGCGATGGTTGTGAGAAATACCTCAAGACGCACGACCAGCTCAAACAGCACCAACGCGACCACGCCAATCCCGAAGGCATAACATGCCCAGAATGCGGCCGAAAATTCCTTTTTAGATCATCTTTTCGGAAACATATGTCTCTGCACAGAAACGGACCACATAAGTGCGAGTTGTGCTCTTCCAGTTTCCGAGATCGCTCAAAATTGAAATTTCACATGAAGAAACACGAAGACAATTACGTAGCTCCGACTTTTGCTTGTGAATTCTGCGAAAAAGTCTATCTGGTGGAGCAAAATCTTCAACTACATGTTAAGAAAGTGCATAAAGGGGAGACCGAATCGCACGTGTGTGAGACTTGTGGGAAGTCTATGGCGTCAAAACAGAGCTTGATTCATCATCAGTATATCCATTTGGGGAGAAAACCTTTTGCGTGCCATTTGTGTGACAAAAGTTTTGCTAAGCCAGGACGGTTGACTGATCACATCAGAACTCATAATAACGAAACACCCTTCAAGTGTGAATTTTGCGAGAAAAGTTTTAGTATGAAAAAAACTTTGAAGTCGCACATGATGGCGCTTCATGAGGGTAAAAAGCATCTGTGTGCGATCTGTGGAAAGGCGCTGTCATCAGCTGAGAGCTTAAAAGTGCACACTAGGATGCACACTGGGGAAAAACCGTTCTCGTGTATGTACTGCGAAAAGAGTTTTGCTAAGAAAGAACATATGACGGTCCATTTGAGGGTCCATACGAAGGAGAAACCACACGTTTGTAAAATCTGTGGGAAAAGCTACACTCAAGGCACTTCTTTGTCGTTACACGTGAGGGCGGTCCATGAAGAAGCTTACTCAATTTGCATTATAAGTCGCACAAAGGGATTTAGGTATGCTAAGCAATCTGTTATTGTACTAAATGTATCTAGCGATGACTCTGTAAAATTGGAAGACGACGACGAATGGGAACTTCCAAAAAGCACAAAAGTCATAAAAAACGCAAGACGTTCACGTCTTTGTAAAATTTGTAATATAAAATTCCCAACGTCTCGAACCTTACGCAAACATCACAAAGAAACTCATAGCCCGAAACCCCTCAGTTGTCCCATTTGTAAGAAAACTTTCAAGTACAAGTGGACGCTGCACAAGCATGCCGAAATTCACACTCAAAAGAAACAGTTTTATTGTGACAACTGCGAAGAAAACTTGGAAACTCTTGAGCAACTCGAGGAGCATAAACAGGTTCATAAAATTCGTCCTGGATTGGTGTGTCCCGATTGCAAAAAAGCCTTCGCATCGCGCTCTTCACTCCGAAAGCATCGCCTAATTCACAAAGGAGTGCGTTTTCCGTGTGATAAGTGTACAAAGAGCTTCAGCGATCCCAGTACTTTGAAACTGCATTTGAAGAAACACGACGAAAATTTTGTACAACCGACGTTTGCTTGCGAGATGTGTGACAAGGTGTATGCGGTTGAGTATAATTTGAAGAACCACATAGCGAAGTGCCACGATGGCAAAGGCAGGTGGCATATTTGTGAGACTTGTGGTAGGAATATGTCGTCGAGGAAGAGTCTAAGGGATCATCAAATGATCCATACAGACGAAAGACCTTTCCAGTGTATGCTTTGCGACAAGAGCTTTAGAAGGAAGGAGCAGCTTACTGACCACCACAGAACACACACCAAAGAAAAACCTTACATTTGTGGATTTTGCAATAAAGCGTTTACTATGAGGAAGAACTTGAAGGAACATGTAAGTGTGCATCACGAAGGCAAAAAACATTTGTGTGATGCTTGTGGAAAGGAAATGGCGTCGGCTACTAGTTTGATGAACCACAAAAAAACGCACACGGGAGAAAAACCATTTTGTTGCAGTTTTTGTGGGAAAAGGTTTACGAAAAAGTACCATTTGCAGTGTCATATTAACGTACATACCAGAGAGAAGCCGTATGCGTGTAAGCTTTGTGATAAGAGATATACCCAAGGGACTTCTCTGCAGTTGCATATACGGGCTGTACACAGTAGGGAAAGACCAGTGGTCAAGTCGGGGACACAAAGACAACGAAAATCACGAAAAAAATTAAAGGAAAATGCTGAAAAATATAAGGCACATTTGGATAAGGAGAGGCAAAGAAATAAAGCAAGACGAATGAAAAACCAAGCAGAATTAGCCAAGGACAAAGTTAAGTTAAAAGAGAAAAGAAAAAAAGATGCTGAGAGGCAGAGAAAACACAGGGCAAGGAAAAAACTTTCCCTTGAGTCTGTCAAAGCAACACCAGAATCTTCAACCTCGTCCTTAGGGACTTATCGCGCGATCCCATTATTGGAAAAGGCAGCGTTCCGATACAAGAAAAATCAACTCAAAAGTCCAGGGAAGAGGTCGGCTGCCGCTAAAAAATTTACTTTAGAACCTTACAGAAGAACTAGCCCCCGACAAATATCACCCAAGGTTTGTGACATCGTAAAAGGATGTTATCAGGTTATCGGTAATATAGAAAGAATGTTGACCAATCGCTCATTAGCTCAGTTGGTTAGATCACATCCTTATAAACCAAAAGTCGAGGGTTCGATCCCTTCATGA
- Protein Sequence
- MELHENSDKYFCTICQKNLKSTYESKRHEFLHSIQGKKCPRCDLIYNFTTVAAYYAHQQKHDNSFSQVVCEVCGKMFAGMQKLKLHSRVHKYADRTYACPICDKIFRSSSGFLHHKNVEHLGKKTVCEICGKELSSLQSLKVHMAFHSGDRPHTCGVCGKAFRYVKDLKHHLRIHNNDKPFECKYCDKKFRSTSHLVLHTKRIHEERDIHCEICEKSFVWPAHLRRHLRQVHKMKLGELPIKTENAQKSPKAPRRLSCKICKEEFPNVLFLRRHKIDIHHLGKFACPVCKKHFKHRSTLKKHRDVQHGGGKLFYCDGCEKYLKTHDQLKQHQRDHANPEGITCPECGRKFLFRSSFRKHMSLHRNGPHKCELCSSSFRDRSKLKFHMKKHEDNYVAPTFACEFCEKVYLVEQNLQLHVKKVHKGETESHVCETCGKSMASKQSLIHHQYIHLGRKPFACHLCDKSFAKPGRLTDHIRTHNNETPFKCEFCEKSFSMKKTLKSHMMALHEGKKHLCAICGKALSSAESLKVHTRMHTGEKPFSCMYCEKSFAKKEHMTVHLRVHTKEKPHVCKICGKSYTQGTSLSLHVRAVHEEAYSICIISRTKGFRYAKQSVIVLNVSSDDSVKLEDDDEWELPKSTKVIKNARRSRLCKICNIKFPTSRTLRKHHKETHSPKPLSCPICKKTFKYKWTLHKHAEIHTQKKQFYCDNCEENLETLEQLEEHKQVHKIRPGLVCPDCKKAFASRSSLRKHRLIHKGVRFPCDKCTKSFSDPSTLKLHLKKHDENFVQPTFACEMCDKVYAVEYNLKNHIAKCHDGKGRWHICETCGRNMSSRKSLRDHQMIHTDERPFQCMLCDKSFRRKEQLTDHHRTHTKEKPYICGFCNKAFTMRKNLKEHVSVHHEGKKHLCDACGKEMASATSLMNHKKTHTGEKPFCCSFCGKRFTKKYHLQCHINVHTREKPYACKLCDKRYTQGTSLQLHIRAVHSRERPVVKSGTQRQRKSRKKLKENAEKYKAHLDKERQRNKARRMKNQAELAKDKVKLKEKRKKDAERQRKHRARKKLSLESVKATPESSTSSLGTYRAIPLLEKAAFRYKKNQLKSPGKRSAAAKKFTLEPYRRTSPRQISPKVCDIVKGCYQVIGNIERMLTNRSLAQLVRSHPYKPKVEGSIPS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -