Basic Information

Gene Symbol
SMARCA5_1
Assembly
GCA_027724725.1
Location
JALNTZ010000122.1:12459-21408[+]

Transcription Factor Domain

TF Family
MYB
Domain
Myb_DNA-binding domain
PFAM
PF00249
TF Group
Helix-turn-helix
Description
This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 3 2.2e-06 0.004 18.4 0.1 3 41 764 803 761 811 0.91
2 3 0.24 4.3e+02 2.3 0.0 3 20 866 883 864 899 0.88
3 3 6.8 1.2e+04 -2.4 0.0 31 45 910 924 908 925 0.80

Sequence Information

Coding Sequence
ATGAAATTTCACAATCCGACTTCAAATAAAGTAATTGAGGTTTCTTCTCAAAGTAAAAATAAATTGGAAGATGCTGATATAAAGAAAAAACGTTTTCATTATTTACTTCGACATTCAGAAATTTTTTCTCATTTCGTTGAAGATGCTGTGAAGGGCACACTAATAGGAGGCAGTCGACATCGCCGTTCTGAGAAGGACGAAGACGAGGAACTATTAAATACAGCTCAAGATAAATCTTTAACTTCTTCTGTAGTGATAACAGAATCTCCTCATTTTATCACTGGGGGAGCTCTAAGAGATTACCAAATACGCGGCTTAAATTGGCTTgtgaacttatacgagaacgccgttaatgggattctagcagacgaaatgGGCTTGGGTAAAACTCTACAAACAATCTCCCTGTTAGGTTATCTAAAACATTTCAAAAACAATAGCGgccctcatcttgtcattgttcctaaatccactttgcacaactggcttaacgagttccaaaggtggtgtcccagcttgcaaactgtctttattacgggctctaaagaagaacgAATCGCTTATATTAAGGAAGTTCTCCTGACCACCACGTGGGATGTGCTTATTACTTCGTATGAACTGGTTCTTCTAGAGAAGTCTCTTCTGAAGAAATTTCACTGGCAGTATTTAGTCATTGATGAGGCGCACAGAGTGAAAAATGAAAAGTCCAAACTATCTCTTGTGGTTCGCGAATTTTCCAGTAAACACAGGCTCCTCATTACGGGGACCCCTCTTCAGAACAATCTACACGAACTTTGGGCTTTGCTGAATTTTTTACTTCCAGACTTTTTTGCGTCTTCAGAAGACTTTGATTCTTGGTTTGACACAATGTATGCCGGCGAGGACAAGCAGAAAGAAGTTGTTTCAAAATTGCATTCGATTCTCAAGCCGTTTCTATTGAGACGCTTGAAGTCAGACGTCGAGAAAACTTTGCCCCCCAAGAAAGAGACCATCATTTACGTCCGCATGTCAGCCATGCAAAGGGAATGGTACACGAAGATTCTGAAAAAGGATGTGGACGTACTTCAAGGAGGAAAAGCGGATCGGCTTCGGCttctaaatatacttatgcaacttcgcaaatgctgcaaccatccgtatctctttgacggcgctgagccagGGCCCCCATATTCTAACGAGGGCTTGACGACCAACTGCGGAAAAATGACCGTCCTTGAAAAGTTACTCCCTAAGTTGCAGCTGGGTGGCTCTAGAGTTTTAGTCTTTAGTCAGatgacccgtatgttggacatcttggaggatttttgcaattggaagggctataagtactgtcgattagacgggcaaacgacccacgCGGACCGGCAAAAAATGATCGACGCTTACAATAAGGAGGGCAGTGAGAAGTTTATTTTCTTGCTTAGCACACGGGCTGGCGGCTTAGGGATCAATCTTGCTACCGCCGATACCGTCATTCTGTACGACAGCGACTGGAATCCACAGATGGACCTTCAGGCGATGGACAGGGCGCACCGCATTGGCCAGAAGAAGCAGGTTCAAGTCTTTCGGTTCATTACGGAAAATACCGTAGAGGAAAGGATCGTAGAACGGGCCGAAATGAAACTTCATCTGGACGCCCTCGTCATTCAGCAAGGCCGACTGGCTCAACAGAAGCAGAACCTGGAAAAGGACGAGGTTTTGCATATGATTCGATACGGCGCTGAACGTATTTTCAACGCGAAGGATACTGAAATCACCGAAGAGGACATCGACGCAATTCTGAGAAGAGGCGAGGAAAAGACTCTGGCCTTGAATGCAAAGTTAAAAGAGGCCGGCTACGACCGCTTGAAAGGGCTTTCATTGGACACTCAACCCAGCAGCGTGTACGAATTTGAGGGCGAGGATTGGAGGGCTAAGAGCCGTGACGCCTCAACAGGGTTTTACATTGACATTGGTAAGCGCGAGGCAGTAAAAGCCGGCAGCTATGATGTAGACCAGTACTACAGGGAAACACTGAAGCTGTCATCTGAGAGGAAGACGAGACAGCCGCGCCCGCCTAAGCAGCCATTCGTACACGACCATCAGTTCTATCCGCCTCGTCTGTATGAGTTGCTGGATAAAGAAAAATATGTCTACTGGAAACTCATCCAGTACGTCGTTTCGGACGCCGATGTGGAGGACCCTGCCGAGCGCGCTGCAGTAAGTGGCGAAAAAGTCCAAAGCAGCACGGAACTCACCGAGGAGGAGTTGGATGAGAAGGAGCGACTTCTCAAGCAGGGCTACAACAACTGGAGCCGCAGGGATTTCACATCTTTCTGTAAAGCCTGCGAGAAGTACGGCCGCCGAGACCTCGAGAGCATCGCTGCTGAGTTGGAGGGCAAAACTTTGAAGGAAGTGCGTGACTACAGCGACACCTTCTGGAGGCGCTACAAAGAACTCAGCGGCTGGGAGAAGTATATAGCATCAATCGAACGCGGGGAAGCTAAGTTGCAGAAAAAAGGTGAGACTGTGAATGCGCTGAAAAGAAAGATGGCTCGCTACCGACAACCGTTTCAGCAACTCAAGATAGCTTACAGCACCAACAAAGGCCGGCACTTCACCGAAGAGGAGGACCGATTTCTGGTGTGCATGCTGTACACGCTCGGCGTCGACACCGAAGACGTGCACGAGCGCCTTCTCCGGGAAGTTCGGCAGGCCCCACAGTTTCGCTTCGACTGGTTCATCAAAAGTCGAACGGCTGAAGAGCTGAAGAAGCGTTGTTCGCAGCTACTTAATCTTATTGAAAAGGAAGAATCCGATCTTGCCGAGATGGAAAAGAAAAAAAGAAAAACTAAAAGTAACTTTACACCTAAGAAAAGCTCCGAGGCGGCGAAAAAGATGGTTAAAAGAATAAACGACGAACTTTTTATTGGTACAAATAAAGGTGAGGCGAATAGGAATAACGATGGCAACTTTTTAGAAGCTAACAGTTGTGTTTCTTATTTAAATACAACAAACTTTAACTCTCAGAATAACGCTACCAACTCCACTTCATATGTTGAACAAATCTCCTCCCCACTACAGAACACTGCGTCTGACGTAGAATTTTTTGATAACTTTACTATAGCAGATAACTTTATTGATATATTTTCACCGAGAGAAAACGAAGCTAATATAGATAAACCTCAAGATAACTTAATACTTCCCACTCCAGTAGTGCACAACGATGTAAAAGAATCTTCAAACTTTAACAACGGCCTAAACCATCCGAGCTATACCAGCTCCCTTCCTCATCCCACTAATAACGCATTCCCTACAACTGGTGTACAAACGCTCTGCCAGCCGTTTGGTTATGCCCTGCACCGCCTGCCGGGTACCCCCCCTGTTCAGCCAAGCCATTCTTTACTGTTTGCTCCGCCGCGCGTGTCCGGCGATTCTATATTATCACTAAAATCAGAAGAAACTTTTAAGTATATTGCATTGTGGTTGGTATTCTTTGCTGCTCACTTTGAATATTGA
Protein Sequence
MKFHNPTSNKVIEVSSQSKNKLEDADIKKKRFHYLLRHSEIFSHFVEDAVKGTLIGGSRHRRSEKDEDEELLNTAQDKSLTSSVVITESPHFITGGALRDYQIRGLNWLVNLYENAVNGILADEMGLGKTLQTISLLGYLKHFKNNSGPHLVIVPKSTLHNWLNEFQRWCPSLQTVFITGSKEERIAYIKEVLLTTTWDVLITSYELVLLEKSLLKKFHWQYLVIDEAHRVKNEKSKLSLVVREFSSKHRLLITGTPLQNNLHELWALLNFLLPDFFASSEDFDSWFDTMYAGEDKQKEVVSKLHSILKPFLLRRLKSDVEKTLPPKKETIIYVRMSAMQREWYTKILKKDVDVLQGGKADRLRLLNILMQLRKCCNHPYLFDGAEPGPPYSNEGLTTNCGKMTVLEKLLPKLQLGGSRVLVFSQMTRMLDILEDFCNWKGYKYCRLDGQTTHADRQKMIDAYNKEGSEKFIFLLSTRAGGLGINLATADTVILYDSDWNPQMDLQAMDRAHRIGQKKQVQVFRFITENTVEERIVERAEMKLHLDALVIQQGRLAQQKQNLEKDEVLHMIRYGAERIFNAKDTEITEEDIDAILRRGEEKTLALNAKLKEAGYDRLKGLSLDTQPSSVYEFEGEDWRAKSRDASTGFYIDIGKREAVKAGSYDVDQYYRETLKLSSERKTRQPRPPKQPFVHDHQFYPPRLYELLDKEKYVYWKLIQYVVSDADVEDPAERAAVSGEKVQSSTELTEEELDEKERLLKQGYNNWSRRDFTSFCKACEKYGRRDLESIAAELEGKTLKEVRDYSDTFWRRYKELSGWEKYIASIERGEAKLQKKGETVNALKRKMARYRQPFQQLKIAYSTNKGRHFTEEEDRFLVCMLYTLGVDTEDVHERLLREVRQAPQFRFDWFIKSRTAEELKKRCSQLLNLIEKEESDLAEMEKKKRKTKSNFTPKKSSEAAKKMVKRINDELFIGTNKGEANRNNDGNFLEANSCVSYLNTTNFNSQNNATNSTSYVEQISSPLQNTASDVEFFDNFTIADNFIDIFSPRENEANIDKPQDNLILPTPVVHNDVKESSNFNNGLNHPSYTSSLPHPTNNAFPTTGVQTLCQPFGYALHRLPGTPPVQPSHSLLFAPPRVSGDSILSLKSEETFKYIALWLVFFAAHFEY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-