Basic Information

Gene Symbol
LRRC51
Assembly
GCA_027724725.1
Location
JALNTZ010000005.1:12868308-12874668[-]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 5e-10 2.7e-07 31.3 0.0 1 42 10 50 10 53 0.93

Sequence Information

Coding Sequence
ATGGCAATGCGAAAAAATCTGAAATACAGTGAAGACTCAATGAGGCAAGCCCTCCATGACGTTAAATCCGGAATGCCTGTTGCTAGGgcagcaaaaaaatataatgttccgagaattactctgtattataaaaaaatgggaaaatatccagaagacagaagaatcggtgccccaacagttttaactgttgcagaagaacaagcgcttgttaagtggtgtttctttttgagtgataggggatttcccgtcaccaagaaccagttacttgacagcgttcagctgttaataaaaacaatgaaaagacccaacccattccaaaataatcgcccagggagacactggtacgaattatttttgaaaaggcacccaggagtatcttcccgaacgcctcaaaatttgaccagtagcagaatgaatgtcaccaaagaaaatattagacactggttcatcgaaatcacagaatattttattcagaatgatttaatggatgcaatgagcgatcccacacgggtgtacaacgctgacgaaacagcattttttttatctccgaaaggatcaagagttttggtccgaaaagggcaaaaatcagtatacagttttgtggctaatgacgaaaaggagtgtttaacttctttaataaatgctaatgcagctggtaaacttgctcctcccatgattttattttcttatgaaagaatacctgctgcaatttcatctttaatgccaacaaattttagtatcggcaaatcagaaagtggttggatgacgggggaaactttctatgaatatgtcacaaacatattctacccatggcttgtcgaaaacaacattaaattcccaatcgtattttttgtagatggtcatgtgtcacatttaacattatctttaagcaatttttgtaaagaaaaaaaaattgaacttgttgccctttatccaaatgcaacgcatttattacaacctatggacgttgctgtttttcatacattaaaacaaacatggaaaacttcagtccacaactggagagtctcacattcttatgaaaaaattaaacgtgaagattttgcacctttacttcatgaaactctaaagaagacatgttcagtggagactattcaaaatggatttaaacggtgtggcttatatcctctaaatcctgatgctgtggattataCGAAAATTAAAAATGTATCAGATATTAGTAAACAGAGTGATGATAATTTAAATAATAGCAACCTCGACGGTTATGATGTCAAAGGTTGTCTCCAAATTATTGAAAAAATAATTGGATCTGAAAAAACTCTAGAATTTAAGAGCTTGGCTTCAAAAGAATGGAATGGAAACATTGAAGATACTTCTTTATACCGGTTGTGGATGTCACTAAATGATAGCCTCGTAGGAGATGTTGCTGAAGAAAGAAATCTCCAAGAATCAAATGAACAAAACTTGCAGGATAGATTCCAAACAGATGCTCAAAGCTTGGAAGGGTATGGAAGTCCAAAAACGGATGAGCAGTTACTTTTAGAAGCGGAGCAAATGGAAAATTTTATCGATAATTTGGAAATTCCTAAGGATCAACCAACTTCGTCAAATTGTTTAGATGTTCCTTCTCCGTTTAAACAATGTTTATTTTGGCCTGCTACACCAAAAAAAAAAGATGGGAAACGTAAACCAAAAGAAAAAATCCCATCCGTCGCAACATCATTTCAGTGGCAAGAATATCATAAGAAAAAGTATGCAGAAAAGAAGAGGAAAGAAGATGAAAAACTAGAACGAAAGAGAAAAAGAGAAGAAAAAAGCATATTAAAAGAAGGCAGTAAGAACCAAAGAAAAACTGGAAAATTAAGTCCAGACCAACAAGATTCCGAAGAAAATACAAGCCAATGCCTAGATACTTTAAATATTGGTGACTACGTCGTTGTAGAGTATAATAAAAAATACTTTCCAGGTTTAATATTAAATGTTGACGAAGGAAACTTGTCCAAATACCACGATGACGATTTGTACAATTTCCAAATTTCAGCAATGGAAAAAAGCGGATGTTCTGGATGGCGATGGCCCAAAAGAAAAGATGTTTTGTGGTATAAATTAGAGGATATAAAACAGTCCATTTCTAAGCCATCACCAGAGCTGGCTGTGCCAACTCTAGTCAAAACCGTTCGCCGTCTCCATAGCAACGTCACCTCCTGTCACCACCTCACGATGCAAGTCGATGAAAAGCGGGAGCTCGAGACAAGCAAACCCGCCGATTTCTCCTTCAAAAAATTGAAAGTTCTCGAACCCGCAGGGCCGGAGCAGGCCCGAGCGTCGCGGCTCGGCGGGATACCCGAGCGCGGATCCGCACATAAAAAGTTCCTGACCCGGTCGGTATGGCTCAACAACAATAAACTGAAAAATATTCGGAATTTCGACAACTTCGTCGACTCGATCTTGGAGTTCCCGGAGCAGTTGGGGTGGATCGATTTTTCGTTTAACCAAATCACGGAAATAAACGACACGATTTTGAAATTTGCGGACTTGAGGATTGTTTATTTTCATGGGAATTGTATCGAGAATATCGACCAGGTGTTGAAGCTGAAAAATTTGAAGTTGTTGAAGACGGTGACGTTCCATGGGAATCCGATATCCAATTTGCCGTATTACAGAAATTATGTAATTGCTGCTTTGCCACAGGTAGTGTTAGTATTATGTTTTGCATTTTTAGATAGAGTGGGTTAA
Protein Sequence
MAMRKNLKYSEDSMRQALHDVKSGMPVARAAKKYNVPRITLYYKKMGKYPEDRRIGAPTVLTVAEEQALVKWCFFLSDRGFPVTKNQLLDSVQLLIKTMKRPNPFQNNRPGRHWYELFLKRHPGVSSRTPQNLTSSRMNVTKENIRHWFIEITEYFIQNDLMDAMSDPTRVYNADETAFFLSPKGSRVLVRKGQKSVYSFVANDEKECLTSLINANAAGKLAPPMILFSYERIPAAISSLMPTNFSIGKSESGWMTGETFYEYVTNIFYPWLVENNIKFPIVFFVDGHVSHLTLSLSNFCKEKKIELVALYPNATHLLQPMDVAVFHTLKQTWKTSVHNWRVSHSYEKIKREDFAPLLHETLKKTCSVETIQNGFKRCGLYPLNPDAVDYTKIKNVSDISKQSDDNLNNSNLDGYDVKGCLQIIEKIIGSEKTLEFKSLASKEWNGNIEDTSLYRLWMSLNDSLVGDVAEERNLQESNEQNLQDRFQTDAQSLEGYGSPKTDEQLLLEAEQMENFIDNLEIPKDQPTSSNCLDVPSPFKQCLFWPATPKKKDGKRKPKEKIPSVATSFQWQEYHKKKYAEKKRKEDEKLERKRKREEKSILKEGSKNQRKTGKLSPDQQDSEENTSQCLDTLNIGDYVVVEYNKKYFPGLILNVDEGNLSKYHDDDLYNFQISAMEKSGCSGWRWPKRKDVLWYKLEDIKQSISKPSPELAVPTLVKTVRRLHSNVTSCHHLTMQVDEKRELETSKPADFSFKKLKVLEPAGPEQARASRLGGIPERGSAHKKFLTRSVWLNNNKLKNIRNFDNFVDSILEFPEQLGWIDFSFNQITEINDTILKFADLRIVYFHGNCIENIDQVLKLKNLKLLKTVTFHGNPISNLPYYRNYVIAALPQVVLVLCFAFLDRVG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-