Znev003330.1
Basic Information
- Insect
- Zootermopsis nevadensis
- Gene Symbol
- -
- Assembly
- GCA_000696155.1
- Location
- NW:116655-147257[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.03 1.1 9.3 4.9 3 23 294 315 293 315 0.92 2 12 0.0018 0.065 13.1 4.9 3 23 388 409 387 409 0.95 3 12 9.8 3.5e+02 1.4 7.6 3 23 550 571 549 571 0.95 4 12 0.0099 0.36 10.8 0.3 2 23 627 649 627 649 0.92 5 12 0.0019 0.069 13.0 3.6 2 23 735 757 734 757 0.97 6 12 0.22 8 6.5 3.8 2 23 789 811 788 811 0.90 7 12 0.016 0.56 10.2 4.4 2 23 865 887 864 887 0.96 8 12 0.014 0.49 10.4 2.0 3 23 902 923 900 923 0.95 9 12 9.8e-05 0.0035 17.1 0.5 2 23 973 995 973 995 0.95 10 12 0.12 4.2 7.4 0.3 1 23 1094 1116 1094 1116 0.98 11 12 0.12 4.3 7.4 0.8 1 23 1131 1153 1131 1153 0.97 12 12 0.17 5.9 6.9 5.0 1 23 1224 1247 1224 1247 0.96
Sequence Information
- Coding Sequence
- ATGACTTCCGCCGTTGTTGACTTAACTGCTGCTGCAACGGGAAATGGAATCAAAGACACGGTGTACAGCTACTGTGAAGATTCATCCAATTCCAGTGACGAACCAGAACACCACCATTACGAGGACAAAGCGCTGGACAACGTCACCGAAACTCCAAGCTGTAAGCGTCCATTTCAGGACAGTCCGACAGAACCCGACCAATCACAGGCCAAGAAAAGACGGAAACAATCGAAACCAGTTCGTCTCTTTTCGCTCACAGAACCACCCAGTGAAGACGAAGTTGAAGCCAGCAGTGAAGGTAAGATTCACAGTGAAGTGACATCAAATTCAACCCATAAGGATACGAAACTACAACTGAATCACACGTCCGAAAATGACTCGGATCTGGTTGAGATACACAATCATAATTCTTCACAATGCCTTTACTGTCCAGAGATTTTACACTCCAGTGAACATCTCAAGTTTCACACTGAGGACGGATATTTTCAAAGTAAGTTACAACACACGGTAGGCTTCGATAATTTACTAAGCGGGAAGGCAGAAATACCACTAAACCTTTCCCATTTACCAACCACAAATTCGACTTCACCTACAGATTTCGTAATGGGTTCTCTAATGTCTGAGTTCCGAAATAAATCTAATGATATAATGTATGGGACCAAACCACCAGTAGCATTACCACAGACTTCAGATTCTGGAAATTTTGGAACCTttgttgataataaaatatctgtacctGGTTACATGCCATTGGCGCCACATCTGATTTTACCAATCATCTCACAAAATTCAGGGCTTAACTCAACTTCCTCAGTCACCAAACCCCAAGGCCAAACTCCCAATACAATTCAAATACGCATATTTAATCCAGATGCGTTTTGCGAActttgtaataaagaattttgcaacaaatattttctgaagacCCACAAAGCAAATAAACATGGCATATACGTCGATGGTCCTATAACGACAATTGGTAGTGCCGTAATTCCTGCAACCCAATACCAAACTCCATTGATTcagagtaatttaaatatttcacgaaTTACACCACCCACGCCAGTGACACCAAACCTCAAAACCCTTACAGCTACTCCAAAAATATCCGAATCTGTGATCATGAACCAGATATCTGGAAACGGACAGACGAAAGCATTTTGTGATATTTGTCAAAAGAAATTctgcaacaaatattttcttagacGCCACAAAGCAAAAATTCATGGGATTGATGACGAAACACTAACACCGTCAGGAAATGCAACGTTCTTGAATCTACCAGACAGCATTAGAAAGTTAGATATAGAGGAACGGGGTAGTGCATCTGCCGGTTCAGATACCGGGTCCATCGTCGTAGAGGCAGTTTCCAACGACATTTCTGAGGTACAAGAACTTCGTGTGGACTTGGAAATAAAACGCAGTCCAGCAAACTCCATCACAGACGAATCTGCAGAAACATCAAAGGTAAAAGAAGAATCTGAACAAGAATCAGAGGATGGGCGTTCCGTTGGAGAATGTATCGAAAATACCTCAATAAAATCCATCAAGAATTCTCCGATTCCATCtcaacaaaattccaaagataTCGCGTTATCACCTTCAGACAAGTTACGAAAGTTAGGTGTCATTAATGCCGATGCGTTCTGTGAGATATGTTGCAAggaatattgtaataaatatttcttaaggaCGCATAAGATGAAAAGACACGGAATATATATTTCAGACGGTGACGGCAAGGCCGTGGGTACCAGCAGTACTCCATGGAGTCACAATCAGACGAGTccattgaatttaattgtagGTGAGCAAAGTACCAATAGTTCAGATTCAGGTGAGAAAATACGAAATGATTTCTCTGACAGCGATGATCCAGAATGTGATATCTGTGGACGGCGGTTTCAAAGTTTCTATCTGATGCAGGTACATCGAGCATATTTGCACGTTTCCGAACTCGAGAGGAGAGGCATACAAACAGATTTAACCGAGCTCGATGAAAAAGTTCAGGATGACGTAAAAGCTAATTGCAGTGACGAAAACTTGTCTAAAAAGACAGTTGAATCTACGTGTGAAACTGTAtctttcaataataataatgtcggTAACAGTAACGATGGAAAAGACACCATTAGTGAAGATCTTCAAAAACTTCAAACCATGATATTACAATTGAATAATCTCAATGTAAGTAAAATGACCACTTGTAAAATTTGCAGCAAAGTATCTGAAAATCATTATTGCCTTACAGCACATATGATGACGGAACACGGAATTTTAATGGAGACTCAAAATATcgatgaaaaacaaaaaaatccaTCATTGGAACAAACTGACATACCTCCTCTAATAGACACACAGACGTATTGCTTTTCGTGTAAGAAAGACTTCTTTACCCATTATCAACTTAAACAACACGTCGAAGAATTTCATAACAACTGTCCTGTTTCTACGGGAGCAACTACATCGAATACGATGATTAACAGCTTGATTAAGGAGGAGTTAGACAGTAAGTCCCCACAAGAGACTCATATTCCACCTGTAAATATTGTGGGATCAGACAAACAAATTTCTATGACACCAACGAGCAGTTATTGTAAAATCTGTAACAAGGGACTGTGCAATAAATACTTCATGAAGACTCacatgcaaagaatgcatggCATTGAGATAGAAAACGGGGCACAAATCGGTGGCGTAATATGTGACATCTGCAACAAGGAACTATGTAGCAAGTATTTTCTCCGGGTTCACAAACAAAAACTCCATGGGATTGTTGAAGACATGTCCATGAACCACACCTCAAGGGACAATACCAATGGACCCAACGTGCAATATCAATTAGAACCTGATCAGGCTTTGAAACCATCCGAATTGACTGATCTGAATCACCGATATTTCAGTCACTTCACTGAAGTTTGTTCAATATGCGATCGCCGCTTTCGAAGTACAAAGTGGCTTAAGGCACATCTCTTAAGCGATCACGGTGAGAATGGAATACAGAAATGGAAAGATTTGGAAAATCAATATCAATTAATTTCCCAACAAGAAAAACATCAGTTACAGACAATAAGTAGCTCTGGGATAATAAATCATTCATCTGTCCCTCCAGGGCCCACTTACAGTCCCACTTTGAAGATACCAAACAGTTGGAGTACTCAAGATCATCATCGATCATCACGACCGTCCGCCATGATGCCTATGGAAGGAACAGTCGAAACAGGTGGACATCACGTTTTAGCAAGTCTTTTTGGTACCGGAGATTCGTCATTAAAAAGCTATAATTGTTCCTACTGTCCATTTACGACACCCGTTCTAGCTTTTCTGTTTATCCATGAGAGATCCCATACAGGACTACCAACACAACAGCTGCCTGACCCAGCAAAACCTTTTCAGTGTCCCGTGTGTCTTCAGAGATTCCTCCAGGCCGACGTATTCCAACATCACGTCTTGACTCATCAGTTCTCAGGCGTGTTAAATCCTTTCCCTGGCCCATCTCCACTAGCCTCTTATCAACCCCAAATTGGGAACTTAcgagaacaaattaaatttgttcaacaACAGTCTCCAAAGAATGACGAAAACGTAGAACGTACAAAGACAGAAGACAAGTCCGAATGTGAAGTTATCGAAGAAGATACTAGCAATACTGGTGGGGGGAGATACAAGTTTAGGTGTTCGAAGTGTTTTCAACGTTTCAGATCTCGAGAAAATTGCTTGGCGCATATACAAAACAGGCACATTTCGAATTCAACCGACAACCTCGAAACAGTACCTTCCAGTTCCGTTGAGACAACTGCTATCAAGGTAACTCCAAATGGTTTATATAAATGCACTTGTTGCGGATTCTCATCACTACATATGGTAATTGTGAAGAAGCATATCAGAAAAGATCACACGTCTGAAATCAATCAGTTCGAAACACGGCAAGAACCAGAAACAGAGGAGTTATTAGAATTAAAAGACTTTGCCACGGATGAAGTAAAGAAAAAGTTACAAGAGGCAGTTAGAACGTCTCAGGTCCCAGCTTCTTACGCCGTACCTCAAAATCAAACGCCTTTTTTGGATCAATTCATCATGCAACCGTTTCTTCTGGAAGAACCCAATGGATCGCGAAGTTCTGAACAACTCCAACTGGACCGGAAGTTTGTTCCTTCACTCGTATTTCTCCCTGTCAAAGAGAAATTATCCGAGCCCTTAACAGTCTCCTTTACACTAACGCCAGCTTAG
- Protein Sequence
- MTSAVVDLTAAATGNGIKDTVYSYCEDSSNSSDEPEHHHYEDKALDNVTETPSCKRPFQDSPTEPDQSQAKKRRKQSKPVRLFSLTEPPSEDEVEASSEGKIHSEVTSNSTHKDTKLQLNHTSENDSDLVEIHNHNSSQCLYCPEILHSSEHLKFHTEDGYFQSKLQHTVGFDNLLSGKAEIPLNLSHLPTTNSTSPTDFVMGSLMSEFRNKSNDIMYGTKPPVALPQTSDSGNFGTFVDNKISVPGYMPLAPHLILPIISQNSGLNSTSSVTKPQGQTPNTIQIRIFNPDAFCELCNKEFCNKYFLKTHKANKHGIYVDGPITTIGSAVIPATQYQTPLIQSNLNISRITPPTPVTPNLKTLTATPKISESVIMNQISGNGQTKAFCDICQKKFCNKYFLRRHKAKIHGIDDETLTPSGNATFLNLPDSIRKLDIEERGSASAGSDTGSIVVEAVSNDISEVQELRVDLEIKRSPANSITDESAETSKVKEESEQESEDGRSVGECIENTSIKSIKNSPIPSQQNSKDIALSPSDKLRKLGVINADAFCEICCKEYCNKYFLRTHKMKRHGIYISDGDGKAVGTSSTPWSHNQTSPLNLIVGEQSTNSSDSGEKIRNDFSDSDDPECDICGRRFQSFYLMQVHRAYLHVSELERRGIQTDLTELDEKVQDDVKANCSDENLSKKTVESTCETVSFNNNNVGNSNDGKDTISEDLQKLQTMILQLNNLNVSKMTTCKICSKVSENHYCLTAHMMTEHGILMETQNIDEKQKNPSLEQTDIPPLIDTQTYCFSCKKDFFTHYQLKQHVEEFHNNCPVSTGATTSNTMINSLIKEELDSKSPQETHIPPVNIVGSDKQISMTPTSSYCKICNKGLCNKYFMKTHMQRMHGIEIENGAQIGGVICDICNKELCSKYFLRVHKQKLHGIVEDMSMNHTSRDNTNGPNVQYQLEPDQALKPSELTDLNHRYFSHFTEVCSICDRRFRSTKWLKAHLLSDHGENGIQKWKDLENQYQLISQQEKHQLQTISSSGIINHSSVPPGPTYSPTLKIPNSWSTQDHHRSSRPSAMMPMEGTVETGGHHVLASLFGTGDSSLKSYNCSYCPFTTPVLAFLFIHERSHTGLPTQQLPDPAKPFQCPVCLQRFLQADVFQHHVLTHQFSGVLNPFPGPSPLASYQPQIGNLREQIKFVQQQSPKNDENVERTKTEDKSECEVIEEDTSNTGGGRYKFRCSKCFQRFRSRENCLAHIQNRHISNSTDNLETVPSSSVETTAIKVTPNGLYKCTCCGFSSLHMVIVKKHIRKDHTSEINQFETRQEPETEELLELKDFATDEVKKKLQEAVRTSQVPASYAVPQNQTPFLDQFIMQPFLLEEPNGSRSSEQLQLDRKFVPSLVFLPVKEKLSEPLTVSFTLTPA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -