Znev002384.1
Basic Information
- Insect
- Zootermopsis nevadensis
- Gene Symbol
- -
- Assembly
- GCA_000696155.1
- Location
- NW:30102-80388[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 3.6 1.3e+02 2.7 0.7 1 21 12 32 12 33 0.93 2 15 0.36 13 5.9 0.4 3 22 378 397 376 400 0.89 3 15 0.0012 0.041 13.7 0.1 2 22 602 622 601 625 0.88 4 15 0.03 1.1 9.3 3.2 1 23 639 662 639 662 0.95 5 15 5.8 2.1e+02 2.1 0.2 1 23 670 694 670 694 0.90 6 15 0.00063 0.023 14.6 1.1 3 23 716 737 715 737 0.96 7 15 0.015 0.55 10.2 0.1 1 21 742 762 742 763 0.96 8 15 0.0042 0.15 12.0 3.3 1 23 858 879 858 879 0.99 9 15 0.044 1.6 8.8 2.7 1 23 885 908 885 908 0.96 10 15 0.13 4.8 7.2 1.2 3 23 916 936 914 936 0.96 11 15 0.0034 0.12 12.3 0.4 1 23 943 965 943 965 0.95 12 15 0.43 15 5.6 2.7 1 23 970 994 970 994 0.96 13 15 0.087 3.1 7.8 4.3 1 23 1000 1022 1000 1022 0.97 14 15 0.0015 0.053 13.4 3.0 1 23 1028 1050 1028 1050 0.98 15 15 0.0031 0.11 12.4 1.8 1 21 1056 1076 1056 1081 0.93
Sequence Information
- Coding Sequence
- ATGGATGCAGATCAGGACATCGATGACGATACGCACATCTGTCTCAAATGCCGGACAACCATTACTGGTTTGGACAACTACGTCAAACATCGGAAATCCGTTTGTGCCACCAGTAATTCCACCAGCCGTCCTCAGAATGCTCCTATCAAAGTTGACGTCGAATCTGTTCCAAAAGATTGTACCACGACTCCAGAACACATAGACAACAATCCCAACCTCAAAGCAGATGACTTCTTTTCTTCACTGGAACTCCAAAGTAGTGCTAAGAAAACTACAGTAAATTCCTCAGGAAATTCCGTCAAAATTGCCTGCGGTGTGGTAACAAGAAGCAGGGCTTCCGCAGCGATTCTGGCCAACACTTCGTCACGTGACGCCCAGTTCACAAGTCAACAGAAAAGTGACAGTGAACTTCTTGGGAATATGGCGACGGAACTATTTTCCGCACCAACTGACTTGGACACTGCAGCAAGCACGTGTCTCATGAAGACGGAAAGTCGCGATAATATCATGCAGTCAGCTGTGGACAGAAGCTATCTCGAAGACTCAGCTTGTGAGGAGGAATCTAatgaagaatatgaagatgaagacgaGGACGAAGAAGACGATGGTTGTCCGCCGAGGTCACATACTGGAGGAAAATGGAAGCCTGGAGACTTGACGAGAGGATCCCCGCCGTCTTGGACAAGGACGTCGTCTTCTTCCACACACGCTGAAGAATATCGAGGGAGTAGTAGTACAGGAGGGTGGAGTCTACTCCTCGAAGAGTGCGCCGGAAGTTCTGCCGTCGCGGCAGACCCCCCGCCACATTTCACTGGAGGCAAATGGAAGCCCACTCTACCGAATCAGGCTGTCATTCGCACACAACAGGGTTGCCGTGGACAAAATTCAgacgaagaagatgatgtgcTTCATGAAAACACTGGAGAAAGAAACTCTAATGCGACTGGAATGAATGATACCACAATATCTCGAGTACCTCCTCCAGGTCACACAAGTGGTAAGTGGGTACCGGGAAAGCAGGTCCGTCTGGATGACAGTGTAGAAGACGCTGGTATCACAGAGGGTGGCAGTATGGGCAATATGTTGTTGATTCCACCTCTCCGGAAGTCAGGCAGCACCATTCAGTATTGGTGTGGATCGTGCAACAGGCGACTGAGCTCTAGGACTCTCTACGAGAGGCATTTGTTATCAGAACTGCATTTCAAAAGAACTCTACAAGAGCGGGAGCTAGAAGAAGACCCGCTTAAGGCGCAGAGCGACTCGAATGACAGGGGAAGTGATAAGAGGACAGTGAGGCGAACCGAAGTATACCTCAACAGCGAACTTTGGTCCCGTAGCAAGAGACGAAGGCTGAACTCCGGGACAATTTCAGGTCCCGTAAGGAAACCGAAAAGACGCCGCGACGAGGTGCATTGCGAAGTCTGCAGCTCCAAAGTGTTAAGGCACTTGCTGGGAAAACACTTGGTGTCACATTACCACTGCCGGAAGGCGAGGTCAGGCCATCCACAAGCTGCAAGTCTTGTGCTGGACAATATCCACAGTGTGGTGCGCCAGGCACCCTTCCAATGCAGCCCTTGCAAGTTCTACTGCAACACCGAGGCTACCTTCAAGCAGCACTGGACCTCCCGGGAGCACGAGCGTACCGACACCATGGTGAGCGGTCGTTACTGGTGTTCATTCTGCAAGTACGAATGTGAAAGCTCTGTAGATATGAAGTGCCATATTGAGGGTCCAGTGCACCAGGAACTTGTTGCCGTCATCAACCGATCAGTTCCCATAGTGATCCGCAAGCGGACAGTCCTTTCCTGTGGCAGTTGTGGCGAAGAGTTCCGATACAACGCGCAGCTAAGGAGGCATGTTTTGCGGGCAGGACACCACGACTCCAGCACCAGCTCTGACGTGTACCAGGAGCGTTTTTGCTGCTCCGACTGCCGCTTCGTGGGAAGCTCGAGTGCCTCTCTGCAGCGCCACATTCTTCACACGCACAAAGCGGAGAAGAAGGGCGCCTACTTCTGCAGTGCATGCTCCCTGAACTTTGATTCCGCGGAGGAAGCTGCTCTGCACCGTCGGAGTCAGCAGCACAAATACTCGGCCCTGGCAAGTAGAAGGGACAGGGGACTGAGTGAAGAAGTCCTCACGAAGAACTGCCCTCACTGTGGAGAGAAATTTGAAAACGTATTGCAATTAAAGACGCATCTTCGTGAGCAGCACGCCGAGTTCCCGTACAGGTGTGCGCGTTGTGGGATGACGTTCACATTGCCTCAGGAAGTGTCTCGTCACGTCAGAGAGTCAGCATGCGTCTTCAGGACCGACAAAATCAAATCGGACTCGCCGTCAGACGGAAAGCAGGTGCCGGAGAAGGTTCCAGTGCCGAGTACTTCTGCAGACAGCAACAAAAATGAGGAGGACGGCGAATGCAGATTTGTAACGTGCAGTCAGTGCTCCTACCGCACTGAGTCACAAGCTGAGCTCCTCTTCCACGAGGTCCTGCACGGAGAATCGATTACCGATTCGTCTAGTACAGAGACCGGTCTTGGAACTACCACCAGCCAGGCTCAGAAGGCGATGAGGTACCAATGTCCCTTGTGCACGCGAGTGTTCCGCAAGGCGACGCTACGATGCCACCTCAGAACCCACACACAAGAACGCCCGTTCGTGTGTACCTTTTGTTATCGTGGTTTCGGACACAGATCGTCCATGATCACACACGTGAAACAAACACATCGCACGGAGACGAGTATCGCGTGCGAGGAATGTTCCTTCAAGACGACAAACAAGACCTCGATGGACCGGCACAGGCTGAGACATACCCAGCGCAACAAATCCTTCTTGTGCGCTGTGTGCGGAGCGAATTTCTTCCTCAAGAACACACTACAGCAACACATGAAGATACACACTGGGAAAAACTTCAAGTGTCAGCATGAGGGTTGCATCTTCGCCTGTAGGTCTCAGGCCGAGCTACGCAACCATCAGCAGGTGCACTCTGACCACCGGCCGTACCACTGTGACACATGCACCTACTCCGCCAAAACCAAGCCTCAGTTGCTCAGGCACCACACAGTGCATCTGGTGCAAAGGCCCCACCAATGTCCGCACTGCCCCTTCGCTGCCAGGATAGCATCACATCTCCGGCGTCATCTTCGCTTGCACACGGGTGCCAAACCCTACCGCTGTCCCTATTGCCCCTACACGTGCAACATTCTTGAGAACCTTAGAAAACACGTTCTGTCGACCAGCAAACATCCCGGGAAACATCTGTATGAATGTAGGTTCTGCGAAACAGGGGATGCGTTCAAATCTAACCTGGCTCGTGATTTTCGGGCACACCTCGTCACTGCACATCCTCACCACTTCGGATCGGCTCTTCTGGCAGCGTCCTACGTCGCCGGTATATATGACGCAAACGACGATCCCAAGTTCGTCGAGAAACCCATTCAACTGCAGCCGCGCTGGAAAAGGAGTAAGACTAGGGCTGTGACGACAGGCGACGACGAATGCTTCAACAAGGTCGACGAGAGAGGCCACTGTGATCCAAACGAGCCTCAAGTTCTGTCAGCTCGCATTGAAACTTCTCCCAACAAGAACCCTGAAAGCTCCACGGAAACTCAAATGCGGACTAAGAATTCCCTGCCCCTTTCAACTAACAAAACCAACCTAGAACAGCCACAAGTGAACCCACATGAATTGCTTTCCATGGTTGTCGTCACCGACCCTACTGATGACGTCATCTACATCCAGCTTCCTCCAGATTCGGAAAGAGAAGCAATGGGACGATACTGTGAGTCCGTTCTCTTCCCTACCGAAGGCGATGCGTTTTTGTCTGTTGGGGATTTCAACAAACGACGATCTTCAGGAGGCGACAGTAGCAACAGTACTGGCTGTGAGACCACTGTTATGCTTCCCCTCGAGGCGGAAGAAGTTAAAGAAGTAGGCAGAACAGACCAAGTTAAGGATGGTGAGCAAATGGTTCTTATCAAGGGGACTACAACAGAGCAGCGGCCTCAAAGGAACAATGACCTTGACAAAGAGATGACTGTGATAGAAGTGCCATCTGCTGGTGCTGACCAATACACGAGTCTTTCTCAACATGATATGGAAGAGGGACACGGGCAAGAAGAACCTGAGGGTTACCATAGAGTGTTAGCGCAGACACTAGAGGGTTCTGCCCCTGAACAGACGACCACAGCGCAGCAGCAACAGCGGTACCTCgtcattttcaaataa
- Protein Sequence
- MDADQDIDDDTHICLKCRTTITGLDNYVKHRKSVCATSNSTSRPQNAPIKVDVESVPKDCTTTPEHIDNNPNLKADDFFSSLELQSSAKKTTVNSSGNSVKIACGVVTRSRASAAILANTSSRDAQFTSQQKSDSELLGNMATELFSAPTDLDTAASTCLMKTESRDNIMQSAVDRSYLEDSACEEESNEEYEDEDEDEEDDGCPPRSHTGGKWKPGDLTRGSPPSWTRTSSSSTHAEEYRGSSSTGGWSLLLEECAGSSAVAADPPPHFTGGKWKPTLPNQAVIRTQQGCRGQNSDEEDDVLHENTGERNSNATGMNDTTISRVPPPGHTSGKWVPGKQVRLDDSVEDAGITEGGSMGNMLLIPPLRKSGSTIQYWCGSCNRRLSSRTLYERHLLSELHFKRTLQERELEEDPLKAQSDSNDRGSDKRTVRRTEVYLNSELWSRSKRRRLNSGTISGPVRKPKRRRDEVHCEVCSSKVLRHLLGKHLVSHYHCRKARSGHPQAASLVLDNIHSVVRQAPFQCSPCKFYCNTEATFKQHWTSREHERTDTMVSGRYWCSFCKYECESSVDMKCHIEGPVHQELVAVINRSVPIVIRKRTVLSCGSCGEEFRYNAQLRRHVLRAGHHDSSTSSDVYQERFCCSDCRFVGSSSASLQRHILHTHKAEKKGAYFCSACSLNFDSAEEAALHRRSQQHKYSALASRRDRGLSEEVLTKNCPHCGEKFENVLQLKTHLREQHAEFPYRCARCGMTFTLPQEVSRHVRESACVFRTDKIKSDSPSDGKQVPEKVPVPSTSADSNKNEEDGECRFVTCSQCSYRTESQAELLFHEVLHGESITDSSSTETGLGTTTSQAQKAMRYQCPLCTRVFRKATLRCHLRTHTQERPFVCTFCYRGFGHRSSMITHVKQTHRTETSIACEECSFKTTNKTSMDRHRLRHTQRNKSFLCAVCGANFFLKNTLQQHMKIHTGKNFKCQHEGCIFACRSQAELRNHQQVHSDHRPYHCDTCTYSAKTKPQLLRHHTVHLVQRPHQCPHCPFAARIASHLRRHLRLHTGAKPYRCPYCPYTCNILENLRKHVLSTSKHPGKHLYECRFCETGDAFKSNLARDFRAHLVTAHPHHFGSALLAASYVAGIYDANDDPKFVEKPIQLQPRWKRSKTRAVTTGDDECFNKVDERGHCDPNEPQVLSARIETSPNKNPESSTETQMRTKNSLPLSTNKTNLEQPQVNPHELLSMVVVTDPTDDVIYIQLPPDSEREAMGRYCESVLFPTEGDAFLSVGDFNKRRSSGGDSSNSTGCETTVMLPLEAEEVKEVGRTDQVKDGEQMVLIKGTTTEQRPQRNNDLDKEMTVIEVPSAGADQYTSLSQHDMEEGHGQEEPEGYHRVLAQTLEGSAPEQTTTAQQQQRYLVIFK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -