Basic Information

Insect: Zootermopsis nevadensis
Gene Symbol: -
Assembly: GCA_000696155.1
Location: NW:9644-14845[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 3.5e-05 0.0012 18.5 0.3 1 23 312 335 312 335 0.98

2 14 0.016 0.58 10.1 2.6 1 23 341 363 341 363 0.98

3 14 0.00011 0.0038 17.0 2.3 1 23 369 391 369 391 0.96

4 14 0.022 0.79 9.7 3.6 1 23 396 418 396 418 0.98

5 14 0.25 9 6.4 2.5 2 23 425 446 424 446 0.95

6 14 0.00017 0.0061 16.4 1.0 1 23 452 474 452 474 0.96

7 14 0.02 0.72 9.8 6.9 1 20 479 498 479 501 0.95

8 14 0.15 5.2 7.1 1.3 1 21 507 527 507 528 0.95

9 14 1.5 55 3.9 0.4 5 23 537 556 529 556 0.82

10 14 0.26 9.3 6.3 2.5 3 23 576 597 573 597 0.91

11 14 0.00039 0.014 15.2 1.0 1 23 605 627 605 627 0.95

12 14 0.00017 0.006 16.4 1.0 1 23 633 656 633 656 0.95

13 14 1e-06 3.8e-05 23.3 3.1 1 23 662 684 662 684 0.99

14 14 0.041 1.5 8.9 2.2 1 23 690 712 690 712 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	3.5e-05	0.0012	18.5	0.3	1	23	312	335	312	335	0.98
2	14	0.016	0.58	10.1	2.6	1	23	341	363	341	363	0.98
3	14	0.00011	0.0038	17.0	2.3	1	23	369	391	369	391	0.96
4	14	0.022	0.79	9.7	3.6	1	23	396	418	396	418	0.98
5	14	0.25	9	6.4	2.5	2	23	425	446	424	446	0.95
6	14	0.00017	0.0061	16.4	1.0	1	23	452	474	452	474	0.96
7	14	0.02	0.72	9.8	6.9	1	20	479	498	479	501	0.95
8	14	0.15	5.2	7.1	1.3	1	21	507	527	507	528	0.95
9	14	1.5	55	3.9	0.4	5	23	537	556	529	556	0.82
10	14	0.26	9.3	6.3	2.5	3	23	576	597	573	597	0.91
11	14	0.00039	0.014	15.2	1.0	1	23	605	627	605	627	0.95
12	14	0.00017	0.006	16.4	1.0	1	23	633	656	633	656	0.95
13	14	1e-06	3.8e-05	23.3	3.1	1	23	662	684	662	684	0.99
14	14	0.041	1.5	8.9	2.2	1	23	690	712	690	712	0.98

Sequence Information

Coding Sequence: ATGCATAACAGCGATTACAATAAAGTGAAAGATTTACAGCAATCACAGAATGGTGAAGAAAGAGTGGAAGTGATAGTGAATGAGGATATTGAATCAGGAGAAGAGAAACTCACAGACAGTAGTATGTTGCAACACCCTAGATCAAATAGAAAGCAAACTGACCTTCACAATTTTTGTAGACAGACAGTGGCACATACCGGTGACACTGCAGTGACCGTGAGAGGTGTTCCTGAAACTTGGGACACAGCGACTGATCATGGGGACtctggtgaatatgaagatgcaAAACTAATTTCAAATGAGCCTTGTACAGTGGCAACAAATACATGGGAATATTTACCAAATCAGCTGTGCCGGCTCTGTGCGACTAAAGATGAACATCCAAAGCAGTCAGTTGTTGGCTGGTTGGGcatgttaaatgaaataattccaGATTTGgTTGCCCTGAATGATGAACTTCCCCAGCATATTTGCAGACCTTGCACAAACAAGCTTTTTACATGCAACAAGATAAAGGCAGACTTTATTGAAGCATATGATAAGCTTCAGGCATCATTGGGATTTACAAATTCATCAGGAACCCAGTTCATAGATCCTGAAACAGCTGCACTTGGTCATCAGACTCTTAGTGGGGTTAGGGATGAACAAGTAGTGTCAGAGGATGAAGAGCAAATAGTGTCTGAGATCCCATCTGATGAGTTTTCTATTGTTACACCAAACTCTCATAATGACTTACTTGAAGAAGAAAAGATCGTAAATACTGTTGGTGATTTGTCTTTCAATCCTGAGGAATTTACCGTGTCAGATACTGAAGATGAAGGAACTGTGCCTAGAAATTTGACAGAACATAAATCAGATATGGTCAAAAACACCTCTGCTGCATATGAAGTAGTGATACCAGAACCACACACGACAAGgaatgaaaagtttaaatatgtatgtgGTGAGTGTGAGGAAATGTTCACAAAAAGGGGAGCTCTGAATGCACATAAACGTAGGTACCATACCAATGCCAAAGCATTTGAATGTGAATATTGTATGAAGCAGTGCACATATGCATACCAGTTAGATGACCACAGGCGCATTCACACCAAGGAATTACCATATATGTGTGAAATCTGTGGAAAATGTTTCCGAAACATAACGAGGTTGAAGAACCATGAATATGTTCATAAGCCACCCAGTTATACTTGTGAACTATGCAATAAGAAGTGGCGTAGTAAGTTACATTTAATGCAACACAAGAAGGTTCACTCTACAGACAGAAAACTGATATGTGAGCTGTGTGGGAAAATACTATTTTGTCATTTTAGCCTTCGAATTCACATGCGAATTCATACTGGTGAGAAACCTTTTCAATGTGACAGCTGTGGAAAGTGCTTTGTTTCTGCTGTCAGACTGAGAAACCATGGGTCTGTTCACACAGGCAGAAAATTTCGATGTGATACTTGtagtaaacagttttattacaagCACACATTAATACGACACCAGGAATGTCATATTAAGctgaaacattataaatgtcAAGTCTGTTTACAAGGATTTGCTAGTCTACATTACAGGAATAAACATCGTAAGGTAACATGTAAACTGCCTATTTGTATTGTGTGCAACAAGGTTTTACCCAGTGATAAGACTCTAGAAGAACATCGCACAAAAGAGCACACAGAAGAAGAGGTAGCAGTAGCTGCAAAATGTCATAGAAAATGGTATTTTAAGTGCTGTCCAGTTTGTTCTGAGATCATTTGTGGTAAAGGGAACATGTTGAAGCACATGAAGGAATATCACAAGGATTACACTTACACACCATTTGCATGTGAACAGTGTCCCAAGGCATATTGTACCGCACGTTCCTTGCGTAATCATAGCATGTGGCATAGAGAACAGCATccatataattgtttaatttgtggGAAGATATGTAAGACATGGAACACACTCAAGTGGCATAATATGTCAGCGCATCAAAATGAACGTCCGTTTCAGTGTCACTACTGTGACCTCCAGTTCAGAAGACTTTCAGACTTGATTGTGCATCAGAGGAAGCACACAGGAGAGAGACCATTCTCTTGCCAAATTTGTATGCagaaattttttacaaaaagtgACATCTTAAAGCATGCAAAGAAACATTCCCAAATCATTGAAAATGTGGCATGGGAAGAAGTGGTGGAGGGAACTAAAAGTGATTCTTCACCAGACTTGTTATGTGATGGTACAGTGGAGTAA
Protein Sequence: MHNSDYNKVKDLQQSQNGEERVEVIVNEDIESGEEKLTDSSMLQHPRSNRKQTDLHNFCRQTVAHTGDTAVTVRGVPETWDTATDHGDSGEYEDAKLISNEPCTVATNTWEYLPNQLCRLCATKDEHPKQSVVGWLGMLNEIIPDLVALNDELPQHICRPCTNKLFTCNKIKADFIEAYDKLQASLGFTNSSGTQFIDPETAALGHQTLSGVRDEQVVSEDEEQIVSEIPSDEFSIVTPNSHNDLLEEEKIVNTVGDLSFNPEEFTVSDTEDEGTVPRNLTEHKSDMVKNTSAAYEVVIPEPHTTRNEKFKYVCGECEEMFTKRGALNAHKRRYHTNAKAFECEYCMKQCTYAYQLDDHRRIHTKELPYMCEICGKCFRNITRLKNHEYVHKPPSYTCELCNKKWRSKLHLMQHKKVHSTDRKLICELCGKILFCHFSLRIHMRIHTGEKPFQCDSCGKCFVSAVRLRNHGSVHTGRKFRCDTCSKQFYYKHTLIRHQECHIKLKHYKCQVCLQGFASLHYRNKHRKVTCKLPICIVCNKVLPSDKTLEEHRTKEHTEEEVAVAAKCHRKWYFKCCPVCSEIICGKGNMLKHMKEYHKDYTYTPFACEQCPKAYCTARSLRNHSMWHREQHPYNCLICGKICKTWNTLKWHNMSAHQNERPFQCHYCDLQFRRLSDLIVHQRKHTGERPFSCQICMQKFFTKSDILKHAKKHSQIIENVAWEEVVEGTKSDSSPDLLCDGTVE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01567325;
90% Identity: iTF_01567325;
80% Identity: -