Znev010734.1
Basic Information
- Insect
- Zootermopsis nevadensis
- Gene Symbol
- -
- Assembly
- GCA_000696155.1
- Location
- NW:13525-24186[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 1.6e-05 0.00058 19.6 0.0 2 23 585 608 584 608 0.95 2 10 0.0033 0.12 12.3 4.5 1 23 614 638 614 638 0.98 3 10 5.1e-05 0.0018 18.0 0.6 1 23 644 668 644 668 0.97 4 10 0.074 2.6 8.1 0.2 2 23 675 698 674 698 0.94 5 10 0.0064 0.23 11.4 2.6 1 23 705 729 705 729 0.97 6 10 0.0017 0.062 13.2 0.9 2 23 737 760 736 760 0.94 7 10 5.9e-06 0.00021 20.9 0.2 1 23 766 790 766 790 0.93 8 10 1.2e-05 0.00042 20.0 0.8 1 23 796 820 796 820 0.97 9 10 6.4e-05 0.0023 17.7 0.5 1 23 826 850 826 850 0.98 10 10 1.9 67 3.6 5.1 1 23 863 888 863 888 0.96
Sequence Information
- Coding Sequence
- ATGTCTTGCGAAAGGATTCCAAAGGCAACTCGAAAAGGTCGCGGGCGACTTAAATATGATTACGACGATCTGAGCAAACTATGTTTTGATAAAGTTACGAATTCTGTAAACATATGCTCAAAGACCATTCTGCAAGAAGACAACCAAGATATCATTCACAGTCAGCATAATGGAGATAGAACGAGTGAACTAGAAATGTCCACATcaacaaatttttcattatcTGCCCAAACAGAGATAGTGCATGATATTGCAGGTGAAAATGTGGATGAGTGGTTTAAACAGAGAACTGAATCTGTATCCAGTATAGATTTGGATGCAGTGATGAAGAATGATGAGATGGACACAACTtatttaactgaaaacattGGACACAATTTTTTATCAAATAAAGATGTGGACATGACAAGTatagttacaaatatttgtgacaTAGGATTAGGTTTAGATATACCTACTAATGTATCAGCTAGCTCCAAAAGTAAACCAATTACAGAAACAGACTgtgataatgtaatattaagcaATTATTCAGCAGATCAGGACACTCTTCTAAATGATTTGGATAAAAGTGACCTGTTAAGCAAGCGGGTCACAGTGGATCTTCTAGAAACTGTCAAATTACAGAAAAAGGATAATTCTTCAGATCGTGTGATTGGACAAACTAAAGGTTATACCTTGGTGGAAGACTCTTCTACTCatagaaaacagaataaaacatttaaggCAAAACTTTGGAATGGGAGTGAAATACCTGATACACAGTCAGCAATAGAAAGTAGGAAAGACAAGACAAACTGGGAGAGAATATCAACCACAAGTAAACGAACTGCAGATGTAGattcagaaaaagaaattgattttcctgaattaaatttaatcactttCCAAATTGATACCAATGATGTCATGTGTAGTATTAATCAGCTACCTCATGTAcagacaaataataaagaaacattagTTTCCTCCACAACAGATGATAGTggtaaaaatgttctgaatagTGAAAAAGATATTTCTACTGTACCAGTAGGTATATCAAGAAAGAAACAGTTGGGCCTTTCAACAGAAAAAGATAATcttgtgaaaaatgtttcaaacacaaGTACTAGTACTAAAAACTCTACAACTTTGTCCAAAAACACTAAGCTTCCTAGACTAAATCCTCGTAGTCTGTTAAAAAGCCCTCTTAAACAATCAAATGGTAGAATGAAATCAAGCATTTTAAAGCCATCAGGTCCTTCTAGTTCATCCTCACGAACAAAAGCATCTGATCGATGTGGAAGGACTTCTGTTGAGATACAAGAAGGGTCAAAGGTAGTAGCATCTCCAAAAAAGGCACCAACAATGGCTATCATAGCCATATCCACAGACAAATCCaaaaatacaactgaaattGTTATCAATACTCCATATGGTGAACAGGTTTTTAAGGGAAAGACCACTGATTTAATGAAAGCCACATCTGGGTTATGGCCAAAGTTGGATAATAACAAGATTAAAAAAGCTGACCAGCCTCTGACTATCAGCATGATGGAGCAGTCTTCAACGTTAGATGCTTCTTACGAGGACCAAACCATACCACTGATGACTGATGTTGCAGGTGATTTGGCTGAGGACGGAGAGGAATATGGTGATCCCCCAGAAGAGGAAGACCAACCAGTAATGGAGGCACTTGCTGAGCTCGGAATCACTGTAGACAAAGACAACATCTTCTGTGTTACAACAGGAAATGGCCAGAAATTGTGGGTTTGTCCTGTTAAGGAATGTGGCAAAATGTATCCACGACAGAGCATGCTGAAGGTTCATATCTTGAGCCATTTCAATGTTCGGCCATTTAGGTGTAATTTTGCAGGATGCCATTGGTCATTTTACACATACTTCAAGCTGAAGAGGCACAAAGCAACACATCTGAAGAGGAAAGACTTTGTATGCCCAGTGAAAGGTTGTGAACGCCGATTCACCACAATATACAATCTTAACACGCACCAGAAGTTGCATGCACGGCCTCTTGAGATGGTGTGTCCAGTTGAAACCTGTGCTGCAAAGTTCCAGACCAAAAGAAGTCTAGAACTGCACTTGAAATCTCATGACACACACCATGCACCATACAAGTGTTTATACGAAGGCTGTGGGAAGCACTATTATTCACTCAACTCACTGAACTCCCACTCACGGAGCCACCAACACAAGGAAGAGGAAGTTCGTTGCCAGTGGGAAGGTTGTGGCAAATTGTTTGACAAACCATGCCGACTCAAAGCTCACATGAGGTCTCATACAGGGGACAAGCCTTATCCCTGCATGTACCCGgaatGTGGGTGGGCTTTCTCGAGTGCAAGCAAGCTAAAACGTCATCAACAAAAGCACACTAATGAACGTAAATTTCAGTGTGGCATTGAAGGTTGTGGAAAGTCTTTCATGAGATCAGAACACCTGAAGGAGCATACGATTACCCATGTTGGACAAAGGAATTTCCAGTGTCCGCTTGATTATTGCGGAGTAAAATTCTCAGCAAAGAGTAGCCTGTATGTTCATTTAAAGAAGCATAATAAACCTAAATCTGCAACAGAGGATAAGGTTGTATATCACTGCCCCATAGAGAAGTGTATCAGAACATATACCTGCAAGTCCAGTCTACGTCAGCACATGCTCAAGTTCCATACACCAGTCCTTGCTAATGATCCCAGTCAACTAGACTATATTGCATTACTAACAGGAGACGATGATCTGGCAGCGTTAGAGGGGTTACAGTTTTCTGGAGATATGACACCTGCTGTCAGTGGTAGCATTAGTTCTTTAAATGCTGTCAATCTTGTTACGCCACCACCTGTGATGCTAAATGGCGGTGATTGTATGGCTTCCATTCCATCTGAATATATCAGTACAGaCTTCCAGTTCCCTAGTTTTCTGCCATCACAGATTTGTGCCAGTGGAAGCAGTGGAATTGGATGCAGTAGTGGCACTAACAGTGTCATAACACATGTTGTGCTCACACCACCTGAAACTCAGAATTCAGCCTTTACTATGTCAAATTCAAGTATGTCTGCTGCTCAAACAAGTCAGCCAGATATTGGTGATGGGACAGATCAGCCCCTTAGTATGGCAATGTTTGAACCAGTTGCACTTGTAGCAGATAGTGGGACGGGCTCTGTGCATGGATCAGCACGAACTAGCTTCACGTACCAGGACATTGTCCGAGAGAGGGGTCGCAGAAAAGGGAACACAAGTCCACCATCTACAGACCCCAGCAGTAGTACCACAGGCATGAGAGTTCCATCAGATGTCGTTCTTGGAACAGGACTGCTAGGAAGCAGTCATGACATTGCTCATAACTTTCTGCTCCAGGATGATTTGCCAAGTCATCACCACAGTTTGTATCATGAAGACCATATGATGGCTGTGGGGTCTGGTGTTGGAGAGTTCCAGGTACTGCTGTTGGACCCACCCAACAGCACTCGCCATGAGTTCGCAGAATCAACCATTAACCTCCGAGATCTGGAATAA
- Protein Sequence
- MSCERIPKATRKGRGRLKYDYDDLSKLCFDKVTNSVNICSKTILQEDNQDIIHSQHNGDRTSELEMSTSTNFSLSAQTEIVHDIAGENVDEWFKQRTESVSSIDLDAVMKNDEMDTTYLTENIGHNFLSNKDVDMTSIVTNICDIGLGLDIPTNVSASSKSKPITETDCDNVILSNYSADQDTLLNDLDKSDLLSKRVTVDLLETVKLQKKDNSSDRVIGQTKGYTLVEDSSTHRKQNKTFKAKLWNGSEIPDTQSAIESRKDKTNWERISTTSKRTADVDSEKEIDFPELNLITFQIDTNDVMCSINQLPHVQTNNKETLVSSTTDDSGKNVLNSEKDISTVPVGISRKKQLGLSTEKDNLVKNVSNTSTSTKNSTTLSKNTKLPRLNPRSLLKSPLKQSNGRMKSSILKPSGPSSSSSRTKASDRCGRTSVEIQEGSKVVASPKKAPTMAIIAISTDKSKNTTEIVINTPYGEQVFKGKTTDLMKATSGLWPKLDNNKIKKADQPLTISMMEQSSTLDASYEDQTIPLMTDVAGDLAEDGEEYGDPPEEEDQPVMEALAELGITVDKDNIFCVTTGNGQKLWVCPVKECGKMYPRQSMLKVHILSHFNVRPFRCNFAGCHWSFYTYFKLKRHKATHLKRKDFVCPVKGCERRFTTIYNLNTHQKLHARPLEMVCPVETCAAKFQTKRSLELHLKSHDTHHAPYKCLYEGCGKHYYSLNSLNSHSRSHQHKEEEVRCQWEGCGKLFDKPCRLKAHMRSHTGDKPYPCMYPECGWAFSSASKLKRHQQKHTNERKFQCGIEGCGKSFMRSEHLKEHTITHVGQRNFQCPLDYCGVKFSAKSSLYVHLKKHNKPKSATEDKVVYHCPIEKCIRTYTCKSSLRQHMLKFHTPVLANDPSQLDYIALLTGDDDLAALEGLQFSGDMTPAVSGSISSLNAVNLVTPPPVMLNGGDCMASIPSEYISTDFQFPSFLPSQICASGSSGIGCSSGTNSVITHVVLTPPETQNSAFTMSNSSMSAAQTSQPDIGDGTDQPLSMAMFEPVALVADSGTGSVHGSARTSFTYQDIVRERGRRKGNTSPPSTDPSSSTTGMRVPSDVVLGTGLLGSSHDIAHNFLLQDDLPSHHHSLYHEDHMMAVGSGVGEFQVLLLDPPNSTRHEFAESTINLRDLE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -