Znev007380.1
Basic Information
- Insect
- Zootermopsis nevadensis
- Gene Symbol
- -
- Assembly
- GCA_000696155.1
- Location
- NW:249612-267510[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 1.4 50 4.0 0.1 1 23 292 315 292 315 0.94 2 14 1.8 66 3.7 1.2 3 23 322 342 320 343 0.95 3 14 1.5 54 3.9 0.6 2 20 417 435 416 437 0.91 4 14 0.00042 0.015 15.1 0.2 1 23 442 465 442 465 0.98 5 14 1.6 57 3.9 0.4 1 9 486 494 486 494 0.92 6 14 0.0002 0.0071 16.1 0.6 5 23 499 517 498 517 0.95 7 14 9.2e-05 0.0033 17.2 0.8 1 23 523 545 523 545 0.98 8 14 0.0056 0.2 11.6 0.4 1 23 576 598 576 598 0.97 9 14 5.2e-06 0.00019 21.1 1.7 1 23 603 625 603 625 0.98 10 14 0.0069 0.25 11.3 0.0 1 23 631 653 631 653 0.98 11 14 0.05 1.8 8.6 1.6 1 23 659 681 659 681 0.96 12 14 2.2e-06 7.9e-05 22.3 3.0 1 23 687 709 687 709 0.99 13 14 0.0035 0.13 12.2 2.5 1 23 715 737 715 737 0.97 14 14 0.0041 0.15 12.0 0.4 1 23 756 779 756 779 0.92
Sequence Information
- Coding Sequence
- ATGAGTGATGAAAGCTCAATGGATGACTCAGATTCGCAGAATGAAGGTGACAGCAGAAGTTGGGACAGTGAAGAGGATCTTGCTTTATTGGCAAGTCAGCTATGTCGAGTCTGCGCTGAAGCTAGTGAAGATATGATTCAATGTTTTGGAGACAGAGGAAGGGAAATTCAGCTGGTCGATAAGATACACACTCATCTGCCTATCATGGTTACTGAAGATGATTTACTGCCAATTAATATCTGTACTTCCTGTGTCTCAAAGCTGGAAATATGTCATGAATTGGTGATCAACTGTTTGGATGCAGATGCCAGATTACGGAGTATTCTGGGCTTTGATGTAATGCCAACTGATGAGGAACTGTACGGATACACAAAACCAGAGAGTCCTGGTTCAATTGATTCCAATGAGAAATTAGAGCAGTCACAAGATGATTTGATAAAACCAGACACAAAGAGATTTAAAGAAGAGAAGCcagaagaaactgaagaaaagcCTCAACTGGATGATAAACACAATGCAGACCAGAAAAGTGGTGCAAAACCTGAGgtGAAGGCAGGTTACAAGGTGATTTTGCTGAAAATGAAGAAGTCAAACACAGTCTCACCTGATACACAAATGCAGAAGGCTATGAAGTTTCTAAAAACAGGAGGAAAGACATATAAAGTTCTCAACACGACAAATCAAAAATCACTAATTGTGAAGAAACCACAGAATGATGGAGTTTCTGGTAAAGGATATCAGCAGACATCCTTGACCCAGGAAAGTGAGATTCATGCTAAAGAAGAACAGACTATGAAAACTGATGAACAGGAAGCAAAAGGGCAAACTGATGAggacaatgttaaaaaatatgcagattGGGATAAAATAAAGTATGTGTGTATCTATTGTGATGAAAGTATAGCAGGTAAAAATGAATTCATCTTACACCAAAGTTCTGTCCATAATAATGAAGTATTTGGCTGCGAGCACTGCGTACTAGTTTATGAACTGAAAGAAGATTTTGATGAGCACGTTAAAAGCCATCATAATGAAAAAGCAAATTCAGTTACAGCTGAGAAAAGTTCAAATTACAGCAGCCTCACAGACCAATCTGATGACCATGGTAAACGAAAAGACAAATCTGAGTTTTCCACAAAACCTGCAAAGAAAACGAAGCTTTCGGAAAATGTTAGTTCAAATCCAGAGTGTCCTGTGATTGTAGAAACAGAGACTGAGGGAGAAAAATACTGGAAGTGCAAGGTTTGGCAGTGTAAATGGTGCAATCATGTGGCAACTACAAAACAAGGCTGGAGGGAACATGCTTGTGAGCAGCTACAGGAGTTTCAGTGTCTTGTCTGTGGCAATCAGTTTGATTCTGAACAAGAACTAGAGGAGCACCAGAAAACTGTTCATAAGGAACAGAGAAGGAATAACCTGAAGAATCAACAACCAAAACATACTGAAGAACAGAGGTTTCAGTGTGGTATCTGTGGGAAAGTAAACAATAGCCCTCTTTGTGACCACAGTTTCAATCGCCAAAGGAACCTTGTGGCACACATCAAACGACACAGATCAGAAAAAGGGTTTACATGCAGAGTCTGCCTTGAGACATTTTCAAATAGAGGAGAGCTCATAAGTCATCGAAGGAACCATAGCAGGGAGGAACTGCTGGGTGTGAAGCCGTCATTCTTAGTGAAGCAGAtaaaggaagaggaggaagagatagcatcttcatcatcatcgtaCAAATGTCCAATTTGTTATAGGATGTTTCTAACACAGCAGCGATTGGAAAGTCATGTGGCAATGCATACAGACAACAGCTTTCCATGTCACATATGTGGAAAGGTTTTGAGCAAGAAAAATACGCTAGAGTACCATCTAAGAACACATACAGGCGAGAAACCATTTACATGCAGCATGTGTCCTGGAGCTTTTCAGTCTCGCGTTGGCTTGATTGTACATGAAAGAATACACACAGGAGAGAAACCTTACCAATGTGATCAGTGTGAGATGGCATTCCGATGTCGTGCAACACTTAATCAGCACAAGgTTGTCCACTCTGATGAGCGGCCTTATCGTTGCATGCACTGTGGAAGAGGTTTTAGAAGACGTGACACACTGGACACACACATACGCACCCATACAGATGAGCGTCCCTATGCATGTAGGCTCTGTGGACGTGCCTTTAggcagaaaggagattgcagcAAACATGAGAAAACTCATGGAAAACGAGGAAAGTCTGTTGTGCTACTTACTGAAGGAGACAATTCAGCTATGTACACCTGTCCATTGTGTGGACAAATGTATGAGGTGAAAGAGGATTTGGACCACCACTTTGAAAATGAACATACGCCTGAAGAGAAAGCTTCtagtattgttattataaattctgaCAATGTTATAACAATTCCAAGCATTGCTACTGTTGCAGAGGAAATTCCAAGTCTTGTGCTTCATGAACTgtcatga
- Protein Sequence
- MSDESSMDDSDSQNEGDSRSWDSEEDLALLASQLCRVCAEASEDMIQCFGDRGREIQLVDKIHTHLPIMVTEDDLLPINICTSCVSKLEICHELVINCLDADARLRSILGFDVMPTDEELYGYTKPESPGSIDSNEKLEQSQDDLIKPDTKRFKEEKPEETEEKPQLDDKHNADQKSGAKPEVKAGYKVILLKMKKSNTVSPDTQMQKAMKFLKTGGKTYKVLNTTNQKSLIVKKPQNDGVSGKGYQQTSLTQESEIHAKEEQTMKTDEQEAKGQTDEDNVKKYADWDKIKYVCIYCDESIAGKNEFILHQSSVHNNEVFGCEHCVLVYELKEDFDEHVKSHHNEKANSVTAEKSSNYSSLTDQSDDHGKRKDKSEFSTKPAKKTKLSENVSSNPECPVIVETETEGEKYWKCKVWQCKWCNHVATTKQGWREHACEQLQEFQCLVCGNQFDSEQELEEHQKTVHKEQRRNNLKNQQPKHTEEQRFQCGICGKVNNSPLCDHSFNRQRNLVAHIKRHRSEKGFTCRVCLETFSNRGELISHRRNHSREELLGVKPSFLVKQIKEEEEEIASSSSSYKCPICYRMFLTQQRLESHVAMHTDNSFPCHICGKVLSKKNTLEYHLRTHTGEKPFTCSMCPGAFQSRVGLIVHERIHTGEKPYQCDQCEMAFRCRATLNQHKVVHSDERPYRCMHCGRGFRRRDTLDTHIRTHTDERPYACRLCGRAFRQKGDCSKHEKTHGKRGKSVVLLTEGDNSAMYTCPLCGQMYEVKEDLDHHFENEHTPEEKASSIVIINSDNVITIPSIATVAEEIPSLVLHELS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -