Znev007158.1
Basic Information
- Insect
- Zootermopsis nevadensis
- Gene Symbol
- -
- Assembly
- GCA_000696155.1
- Location
- NW:113870-121930[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0015 0.054 13.4 0.5 3 23 111 131 110 131 0.98 2 13 0.0026 0.095 12.6 0.9 1 23 137 160 137 160 0.95 3 13 0.00012 0.0042 16.9 0.2 3 23 193 213 193 213 0.99 4 13 0.78 28 4.8 0.4 2 15 248 261 247 263 0.88 5 13 2.2 77 3.4 2.8 1 23 306 328 306 328 0.90 6 13 0.075 2.7 8.0 2.8 1 23 362 385 362 385 0.95 7 13 3.8e-06 0.00014 21.5 2.1 2 23 431 452 430 452 0.97 8 13 4.2e-06 0.00015 21.4 1.3 1 23 507 529 507 529 0.98 9 13 3.7e-06 0.00013 21.6 1.4 1 23 535 557 535 557 0.98 10 13 0.00012 0.0043 16.8 0.1 1 23 563 585 563 585 0.97 11 13 0.0024 0.087 12.7 0.9 1 23 591 613 591 613 0.95 12 13 1.3e-05 0.00045 19.9 2.2 1 23 619 641 619 641 0.99 13 13 0.0026 0.093 12.6 0.0 3 20 649 666 647 668 0.93
Sequence Information
- Coding Sequence
- ATGAAAGTGTCGTCGGGTCTGTTACCGAAGAATGCCGTTGTGTGTAGTACGGCGAATACAGATGGAGAAGGTTCGGTAATTGACCTAGGAAGCAAGTTCGACGATTTTACGAAAATTCAGgaAAGCACAAGGCCAGCAGATGAACACCATGTTGAGGAGGCGGAGCAGAAGCAGGGAGAGAGTTCTCAAGAGGAAGAAGACCAGAGCGCTGTTATAAGGGGTGACAGGAGGGAATTGCTGGCTACCAAGGGTGATAGTGATGTCTGTGTGACTCTCAATGAGGAAACACTGTTTTCAGCTCATGGTCTGGACCTGTCTTTGCCACTGTTGTGTGACTTCTGTCCCAGAAAGTTTAATGACTTCAGCAGCTTTGATGCCCACATGGTGACACACAAGGAATGTCGATTCTTCTCCTGTCAGTTGTGCAGCAACACTTATGTCTCTTGGGGCAACCTGGTCGCACATCGCAAGGCATGTCATCAAGGTCAGGTGTTGAGCTGTGATGTGTGTGGCCAACGAAAATACCACCCTGGCCTGGGACCTGTCAACTTCCCCGTGGGAGACAGTCCTGTTGGTTGTGAGGAGTGTGGGGAGGGTTTTACTACCATTATGCAGTTGTACCGGCACTATCGTGTCCATGGCACGCACCAGTTCATGCCTCACAAGGGGAAACTGGCCAAGGTGCCAGAACGAGCTGCTAAGGGCGCTGTTGACCAGCTGTTGGTTATGCCTTCCAGTGACTCGTGTCATGTGTGTTCAACCGAATTCAGAAACCACAAGCATGTGGCAGACGACATGGCAAAGCTGAACGATGATCATACACGCTGCGCTTGCAGAAGTTGTCATTCTGAGTTTTGTAATGCTCATTCTTCAGTGGAGCGCAAGTGTCCGCAACCTGCGTCTACTCCTCATTGTCATACTTGTGTAGTCTGTGGGAAAGTCATGCAAAACCTTGCAAGTTTCCAACAGCACTGTACCACACACAGTGGTGAATGTCATTATAACTGTGACAGGTGTCTCAAAACATTCAGCTTCACATCTAGTCGTGAACATCCCAAGTACTGCCAGCCCCTCATAAATGACTATCACTGCCAGAACTGTGATCAGGAATTCTCTGAATGGTGTGGTATGACAGAACATGTTGAAAAGAAACATGCTTCCTCAAATGAAATGCTGACATGCAGCATTTGTGGCCAATCGTGGCTGTCAGGAAAAGAATTTCTTCTTCACTACCAAGCCTGCCTTACGGAGAAGCAGACTGAGAACACTGCAAGACATCGTTTAGATACAACTTGCTCAGTCTGTCATAAGGTATTCTCACAACCATTTGCCCTTCGTCGTCACCTGAAATTGCACGGTCCATTGAGTCACTGTCGTATCAGTTCATCGTGTGGAGATCACCAGGATCAAGTTCTGGTGCAACAACATCATAAAGCTGCATTTCCAGGAAATTACAAGGAATTGCAGCATTCTTCAGAGTGTAAGCAAAGGTACCGCACGAGTATGAGCCGTAAGAGTTTCATATGCGAGTACTGTGGTCGGGAGTTCAAGAAGAAGCTAAACCTACAGCTGCACGTGAGACGGCACACTGGGGAGCGGCCGTACAGTTGCCAACTCTGTGGTAAAGCTTTCTACACCAACCAGCAGCTTGCTATCCATATCCGACACCACACAGGTGAACGCCCCTACGCTTGCAGCAAATGTCCTAAAGCGTTCACAGGCCCTACTGCATTGTATGTCCATAGAAAACTGCATGACAAAGTGAAGCGTTACCTCTGCCCTCACTGTGGAAAGCGCTTCTTCTGGAGATCAGCCTTTGTTGGTCATATTCGCCTGCACACAGGAGAACGGCCTTATCGTTGCAGCATCTGTAGTAAGTCATTCACTCTGAAGGGCAAGCTGAATCTTCACTTGAAGAAGCATGCTTTGGAGGATACATTGGCATGTTCAGACTGTGGGGAGAAGTTTGGATCCGAAGCTGAACTGAATGCGCATCGCAGTGAGCAGTGTTCTGTCACACTGGTGACTTTTGTGGAGGAGGGTCCATCTGGTGAAAGAGATACTCGTATCATCATTGTTAACACAGAGGATCTGAAGCAGAACAACATTTATATTGATGATGATAAAGTGGTACAGCTCGTGGTCTGA
- Protein Sequence
- MKVSSGLLPKNAVVCSTANTDGEGSVIDLGSKFDDFTKIQESTRPADEHHVEEAEQKQGESSQEEEDQSAVIRGDRRELLATKGDSDVCVTLNEETLFSAHGLDLSLPLLCDFCPRKFNDFSSFDAHMVTHKECRFFSCQLCSNTYVSWGNLVAHRKACHQGQVLSCDVCGQRKYHPGLGPVNFPVGDSPVGCEECGEGFTTIMQLYRHYRVHGTHQFMPHKGKLAKVPERAAKGAVDQLLVMPSSDSCHVCSTEFRNHKHVADDMAKLNDDHTRCACRSCHSEFCNAHSSVERKCPQPASTPHCHTCVVCGKVMQNLASFQQHCTTHSGECHYNCDRCLKTFSFTSSREHPKYCQPLINDYHCQNCDQEFSEWCGMTEHVEKKHASSNEMLTCSICGQSWLSGKEFLLHYQACLTEKQTENTARHRLDTTCSVCHKVFSQPFALRRHLKLHGPLSHCRISSSCGDHQDQVLVQQHHKAAFPGNYKELQHSSECKQRYRTSMSRKSFICEYCGREFKKKLNLQLHVRRHTGERPYSCQLCGKAFYTNQQLAIHIRHHTGERPYACSKCPKAFTGPTALYVHRKLHDKVKRYLCPHCGKRFFWRSAFVGHIRLHTGERPYRCSICSKSFTLKGKLNLHLKKHALEDTLACSDCGEKFGSEAELNAHRSEQCSVTLVTFVEEGPSGERDTRIIIVNTEDLKQNNIYIDDDKVVQLVV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -