Basic Information

Insect: Zootermopsis nevadensis
Gene Symbol: -
Assembly: GCA_000696155.1
Location: NW:66397-85057[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.044 1.6 8.7 0.2 2 23 388 410 387 410 0.95

2 17 5.7 2e+02 2.1 4.9 1 20 415 434 415 437 0.93

3 17 4.6 1.6e+02 2.4 8.2 2 23 579 600 578 600 0.95

4 17 2.9 1e+02 3.1 7.9 1 23 605 627 605 628 0.92

5 17 0.014 0.49 10.4 2.8 1 23 634 656 634 656 0.96

6 17 0.18 6.6 6.8 4.1 1 20 663 682 663 685 0.88

7 17 0.012 0.45 10.5 1.1 1 23 690 712 690 712 0.95

8 17 0.011 0.4 10.6 2.0 1 23 721 743 721 743 0.92

9 17 8.6e-05 0.0031 17.3 1.9 1 23 749 771 749 771 0.98

10 17 1.2e-07 4.2e-06 26.3 0.7 1 23 777 799 777 799 0.99

11 17 0.098 3.5 7.7 1.1 1 23 805 827 805 827 0.98

12 17 0.00032 0.012 15.5 0.6 1 23 849 871 849 871 0.97

13 17 6.3e-08 2.2e-06 27.2 0.9 1 23 877 899 877 899 0.98

14 17 0.0029 0.11 12.5 0.1 1 23 905 927 905 927 0.97

15 17 9.7e-05 0.0035 17.1 4.6 1 23 933 955 933 955 0.97

16 17 1.9e-05 0.0007 19.3 2.5 1 23 961 983 961 983 0.99

17 17 0.00048 0.017 14.9 2.8 1 23 989 1011 989 1011 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.044	1.6	8.7	0.2	2	23	388	410	387	410	0.95
2	17	5.7	2e+02	2.1	4.9	1	20	415	434	415	437	0.93
3	17	4.6	1.6e+02	2.4	8.2	2	23	579	600	578	600	0.95
4	17	2.9	1e+02	3.1	7.9	1	23	605	627	605	628	0.92
5	17	0.014	0.49	10.4	2.8	1	23	634	656	634	656	0.96
6	17	0.18	6.6	6.8	4.1	1	20	663	682	663	685	0.88
7	17	0.012	0.45	10.5	1.1	1	23	690	712	690	712	0.95
8	17	0.011	0.4	10.6	2.0	1	23	721	743	721	743	0.92
9	17	8.6e-05	0.0031	17.3	1.9	1	23	749	771	749	771	0.98
10	17	1.2e-07	4.2e-06	26.3	0.7	1	23	777	799	777	799	0.99
11	17	0.098	3.5	7.7	1.1	1	23	805	827	805	827	0.98
12	17	0.00032	0.012	15.5	0.6	1	23	849	871	849	871	0.97
13	17	6.3e-08	2.2e-06	27.2	0.9	1	23	877	899	877	899	0.98
14	17	0.0029	0.11	12.5	0.1	1	23	905	927	905	927	0.97
15	17	9.7e-05	0.0035	17.1	4.6	1	23	933	955	933	955	0.97
16	17	1.9e-05	0.0007	19.3	2.5	1	23	961	983	961	983	0.99
17	17	0.00048	0.017	14.9	2.8	1	23	989	1011	989	1011	0.98

Sequence Information

Coding Sequence: ATGAGAAAAAAGAATATGGTTCTGTCACAGTGGGATGAAGaagTTGCAGGTTCGTTGGATGAGCATTCTGATGTGGAGGAACAAACAAAGATGTGCACTGATCTGCTGTGTCGTGTGTGCGCGTGTGCAAGCGAGGAGTTGGTCTCATTGTTTGGGAAGGAGAGTGCAGAATTGCAACTGCTTGAAAAAATTCACATTCATCTACCCATTATGGTGACTCCAGAAGATTTGCTGCCAGTGACTCTGTGCACATCTTGTATTTATAAACTTGAATTATGCCATGAATTTGTTAATGGATGCTTGGATGCAGATGCAAAGTTGAGAACAATTCTTGGCTTGAAAGTGGATCACAGTatattttacagtGATGACCATATTGTTGAGTATCAGTTAGGAATGGCTAAGGAACCTTCTACAGGAATAATAAAAGAAGAAGTTAATGCAAACATTTTTGAAGATTCTGCAGATCAGGTATTTTCAGATTGTATGCTAGAGTCAATGAAATCAGAAGACCGTAAACCTGATTGTGCAGAAGATAATAATATTCCATTATCTGCAGCTGAACATAATACTCAAGTAGATGTAAGAAGTGTGAGTGGCATTGAATGTGAAGCTATTGATAAGCCTCATCATGCAAAGTACACAAAAATTGCAGCCACTGTAACTGAATGGAATACGGAAGTAGACGAAGAAGGTGTGAATGTAATAGAACATGAAACTGGTGACTTTGATCATCATTCTTATCAGCTACAGAATACTGAAGTACAAGAAGGCTCATTCAATCAACAAATACATGATTCTCTAAACGATGTGGATTCTGCAGCAATTTCTGTGAAACAAAGAAGTGGTGGGCCtgtaaaaatgttaagaatGaaaacaaagaaaccagTATACAAAATAGTTGTTATGAAAGTGAAAGATGCAAAGTTGAGGAAGGCTTTAGATGTTATGATGAATGCAAGGAAGACAGATCTTGCGTCTAACAAgaaacaatttatttcacaacaaacaCTCAAACACGAACAGTCAGCTAGTTCAGAATCATCTAGACCAGAACACCCTGCACTTTCCACAGGAGATGCAACATCTGAGGCAGTGGAACAGCAGAAACCTGCAAATACACGTGCAGACCATTGCTGTACACAGATGGAGCAATCTTTGCATTGTGTGTATTGCGGGACAACTGCTGCCAGTAAAGATGATATCATTTCACATCAGATAACTTCTCatcgtaataaaatattccattgtGAACAGTGCGGTGCTGTATGTTACTCCAAGGAATTATTTGATGAGCATCAGGAATGTCATTTGGAAGAATCGAAGCATAACGTAATTGTCAGAAGGGACTTTCATGCTGATCACAACCTCGAGTTACAACCTTCTGTTTGTTTGGAAGAAACTCAGCCATCTGTATCAAATAATAGCAAACTTACTGGTTATGGTGCTGGAAACATGGACAAAAGAGAGGAATTGGGGGCATGCAATCCACATCCATTAGACAATAAACCTGATGGTGTATTGCCAGTACTAAAAAGCCTAGAAACTGAGAATTATAAACCAAAAATTTGTGAaaccattaataaaattattggaaaGAATGGCAATCGTACCGAAGTTGgagcaagtacatctgaaaacATGAGAAAGAAAGCTCAAAAGAAACTGGAAGATTATAAATCAGTGAAGTCAAAATTTAGGGTAGagaaaaaagtaaagaaatataaaacttggAAATGTAGTCATTGTAACCATGTTTCCACTTCACAGAAGAAGTATAGAGAACATTGTCGAGTTCATCCTCAAGTTAAGTTCTCCTGTTTCTGTTGTGATAAGCAGTTCCAGTCACAGAAAAGTCTTGATCACCATATCTATATACATCACTCTGAtgcaaagtattttatttgtgagcATTGTGGAATGTACTTCCATTTATGGCGTTCTCTTAGAgaccatttatttattcatgaaaaaGCCAAAAGCTTATTTCATTGTGACATATGTGGAAGAAAATTTGGGTCAAGAGCAAGTTATGATAATCATTGTTCTAGCCACAGTGAAGCTGCATTCCTCTGTGATGTATGTGGGAAGAGCATGAAGAACTTCACAAGTCTGCGATTGCACAAACTGTCTCATGTTTATCCTGGTAATGTGCTCCAACATTCTTGCATAATATGTGCAAAGACGTTTCGAAGCAGGTATTTTCTTGCTGATCACATGCAGcagcacaaaaataattgtCCTTATGAATGTACACAGTGTGGAAGAAGATTTCGTATGAGAAGGCAACTATCAAATCACAAGTTAATCCATGTTAATGCTGGTCAGTATAAATGCCCTGTTTGTGGAAAAGGGTTTAACCGTCAGCAGTACATGAGAGTGCATATTAGAACTCATCAACGATCATTAAAATACACTTGCAAAATATGTAAGTGTCCATTTCTTGGTGTGGGAGAACTCCTCATGCACCGTAGAACTCATACGCAGGAGGAAATTGAGGAAGCATCTAAACAGCAAGTTCTACAAGGAAGAGATCCATTAGCATTCATGTGCCAGATATGTGGAAAACAGCTAGCAAGCAAGTTTACTCTTAAGAACCATGTGATGTTGCATGCAGATGACAAACCTTTCATTTGTGAGATTTGTGGAAAGAGTTTCACTATGAAGTCAACTCTGCAGACACATCAACGTGTGCATACTGGAGAGAAGCCCTATTCATGTCAATATTGTGGTGAGGCATTTCAGTCCAAACAGATTCTCATTATCCATGAACGTATACACACGGGGGAAACACCTTTCAAGTGTACTCAGTGTGATAAGGCATATCGTTCGAGACACAGCCTCAGGCAGCATCTCCTGTTTCATACAGACTATCGGCCATATGAGTGCCCCCAGTGCGGTAATAGATTTAGACGTCAGGATATACTGTGCACTCACATGCGCACACACACTGGAGAACGCCCCTACGCTTGCAAAGTTTGTGGCCGTGGCTTCAAACAAAGAGGGGACTGTAACAAGCACCAGCAAAGACATATGTTATAA
Protein Sequence: MRKKNMVLSQWDEEVAGSLDEHSDVEEQTKMCTDLLCRVCACASEELVSLFGKESAELQLLEKIHIHLPIMVTPEDLLPVTLCTSCIYKLELCHEFVNGCLDADAKLRTILGLKVDHSIFYSDDHIVEYQLGMAKEPSTGIIKEEVNANIFEDSADQVFSDCMLESMKSEDRKPDCAEDNNIPLSAAEHNTQVDVRSVSGIECEAIDKPHHAKYTKIAATVTEWNTEVDEEGVNVIEHETGDFDHHSYQLQNTEVQEGSFNQQIHDSLNDVDSAAISVKQRSGGPVKMLRMKTKKPVYKIVVMKVKDAKLRKALDVMMNARKTDLASNKKQFISQQTLKHEQSASSESSRPEHPALSTGDATSEAVEQQKPANTRADHCCTQMEQSLHCVYCGTTAASKDDIISHQITSHRNKIFHCEQCGAVCYSKELFDEHQECHLEESKHNVIVRRDFHADHNLELQPSVCLEETQPSVSNNSKLTGYGAGNMDKREELGACNPHPLDNKPDGVLPVLKSLETENYKPKICETINKIIGKNGNRTEVGASTSENMRKKAQKKLEDYKSVKSKFRVEKKVKKYKTWKCSHCNHVSTSQKKYREHCRVHPQVKFSCFCCDKQFQSQKSLDHHIYIHHSDAKYFICEHCGMYFHLWRSLRDHLFIHEKAKSLFHCDICGRKFGSRASYDNHCSSHSEAAFLCDVCGKSMKNFTSLRLHKLSHVYPGNVLQHSCIICAKTFRSRYFLADHMQQHKNNCPYECTQCGRRFRMRRQLSNHKLIHVNAGQYKCPVCGKGFNRQQYMRVHIRTHQRSLKYTCKICKCPFLGVGELLMHRRTHTQEEIEEASKQQVLQGRDPLAFMCQICGKQLASKFTLKNHVMLHADDKPFICEICGKSFTMKSTLQTHQRVHTGEKPYSCQYCGEAFQSKQILIIHERIHTGETPFKCTQCDKAYRSRHSLRQHLLFHTDYRPYECPQCGNRFRRQDILCTHMRTHTGERPYACKVCGRGFKQRGDCNKHQQRHML

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -