Znev007385.1
Basic Information
- Insect
- Zootermopsis nevadensis
- Gene Symbol
- -
- Assembly
- GCA_000696155.1
- Location
- NW:85906-170359[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0022 0.078 12.9 0.1 2 23 274 296 273 296 0.96 2 13 5.8e-05 0.0021 17.8 2.6 1 23 355 377 355 377 0.97 3 13 7e-05 0.0025 17.6 3.3 1 23 450 472 450 472 0.98 4 13 0.23 8.2 6.5 0.2 1 18 517 534 517 539 0.85 5 13 0.00037 0.013 15.3 2.9 3 23 608 628 607 628 0.99 6 13 7.8e-06 0.00028 20.6 2.4 1 23 680 702 680 702 0.97 7 13 1.7 60 3.8 6.7 1 23 735 757 735 757 0.99 8 13 8e-06 0.00029 20.5 3.2 2 23 764 786 763 786 0.94 9 13 4.2e-05 0.0015 18.3 0.7 1 23 792 814 792 814 0.97 10 13 0.00026 0.0094 15.8 3.2 2 23 821 842 820 842 0.90 11 13 0.00092 0.033 14.0 5.0 1 23 848 870 848 870 0.95 12 13 0.0011 0.04 13.8 9.8 1 23 876 898 876 898 0.96 13 13 0.00071 0.025 14.4 0.4 1 23 904 926 904 926 0.98
Sequence Information
- Coding Sequence
- ATGAGCGGAGCATCAGAAAATTTTGAACTAGAAGCTGGTTCATCTGGAATGATGGAATCTTCAGTTATGGAAGGTGAAGAATATTATAATCCAGAAGGCAGTGAATGGAGCCAAAAGGTCGACACTGGCCAGTTGTGTCGTGTGTGTGCCAATGCAAACGATTATCTCATACCCATTTTTGATGGTGAAGGTTTGGAGCATGAACTTGGTATGAAGATCGAGAAACACCTTCCGATCAAGGTGACAGAGACTGACAGTTTACCTCAACAGATGTGTTACCAGTGTGCATCAACATTAATAGCATGGCACGATCTTGTCATTAGTTGTGTAGAAGCTGATAAGAAGCTGAGAGAATTACAAgtggaagatgatgatgatgatgacggtgATGACAAGGGTGCTGAGatgtttGAGTCTCCATCATTGGATGCTGAAATGACAGATGATGCTGTTCAGCCAAGTACATCAGAAGTACAAAGCCAAGTTTCAAAGACTCCATCTCCAAAGAAAATACTTCTTaACAAGGAGAAGAAACCGAAGCTGAAAATGGTGTTAGTGAAGGGACATGCAGCTGGCACATCTGGGCAGAAGACCAGTTCAAAGACTCAAGTTGCGAAGGCCCTTGAATTGGCCAAATCCAAGGATGGTTCCAGTCAGGATTCAGCAAGTGAAAGGTGTCAACAGCCTCCTCAGACTCCATTCAAAACTTTCCaagaacaaaatgaaatgaaCATGGCCGGGCCCAGGAATACCGCTGATGCTTTGACAGACAATGGTCTCGTTAAGAATGAATGTACTGATTCAAAGGATGCATGGTTAACTTGTGATTATTGTGGACATATATCTGCTAAGAAAGCTGAGTTGATAATTCATATCTCTACAGTACATCCGCAGGAGTTGGCCAGTTTGAATATTCCTGCAGGATGTGTGTCTGGGTCAGAGTTGGAATGTAAATCAGATGTCTGTGAGATTAAGGATTGTATGTATGAAGGTCATAATGGCCGTAGTTTTGGGAAATCTAGATTGGGAAAAGTAAAACATTCTGCTGTAGCAAATCAGCAGTTTCCATGCAGTGTGTGTGGAAGATTCTTTAAGAGGAAGTCTGATGCTTGCAGACACgttgaaaaacacaaattacaggattttgtttttaaaaatgtagaaagtCTTGCTGGTGATTTGTATGGTACTTCTGACAGTGGCTTGGCTACTGAAAATGTTCAGGAATTTCCTGACAGTGAACATCTTAAATCTTGTTTAGTTGAAATACGTAGGAACTATGAAAATTCACTTGGTACAAGCAATGAAAAGACTAACGATTCAGTAATATGTGGGAAGAATAAAAGTTTCTCGTGTTATGTCTGTGGTAGAAAACTTACAAGAAAGCATGATTTACTTAGGCATTTGAAAATGCATGCTAAAAAATTGGGTTCGTTTGTGTCCTcagatgtaaattattatacagcAGGCAGCATTAAAAAAATGGTTTCTGGTGCTCAGTCTGGTGACAGAAGTTCTGAATTGTCAGAGACTGACATCATTCAAGGTTATCCATGTCATGTTTGTGGTAGAGTACTTAGAGGAACATTTGATTTGCGCAGACCTTTGAGAAAACATTCCAGGAAGCCAGATCAGGTTGATGGTGAATTTTTTCAAACACTTTCAAATATTGGTTCTGGAGACGATATTCCATCAGGCAGCTTGTCTTCAGGTAATGGCCCAGTTAGTACTCTACTAGAAGCAAATGATGATAGTATTCATGGAAGCAAGGTTGCAgttacagaatttgtttttaataatgaaagaaaaactgatTTACTGTGTAATATTTGCAGTAAAATGctgacaagaaaatattatttgcatagGCATTTGATAACGCACAGCAAGAAGCAGTATCTATATTCTGATGACAGACTGTCTGACATGGGACCAGCATTTGTAGACGGAAATGCATACTCATGCTCAGGTGATGATGCACATTTGGAGAATTCAGATGGGAAAACAAGTACATTTGATATACACACAAGTCAAAACTTTTCATGCAGTGTATGTTCTAAATCATTTACCAGGAGGTTCGATTTAAAGAGACATGCAGAGCGGCATTCCAGCGAAGATGTGGATAAAATTGTTTCCTTGAAAAGTAGTACTGACAATGTATCATTGGCTTCTGCAAAGGTGGTTATAGAAGGCAAGACACTTTACAGATGTGAACATTGCTGTAAGTACCTTATGACAAGGTACAGCTATGTGCGACATCTACGTATCCATAGTGGCGAGAAACCTTGTACTTGCCATGTATGTGGCAAACAGTTTAGAACATCTGCATTGTTAAATCGTCATGTTAGGGATGTGCATGAGGGTATAAAGGAACATCCTTGTGATATATGTGGACGTAAGTTTGCCAACAAACGTGCTATGCTGGACCATAGGAGGGTTCACACCGGAGAGCGTCCTTGTGTCTGTCATGTGTGTGGGAAAGCATTTAAGACAAAGGCATCTCTTTATGTTCACAATCTGTTTCATATGGATGTATTTCCACATCAGTGTATACATTGTAATAAGTCCTTCCGTAGAAGACAGCAATTGAATGTGCACCTTTTGCTTCATACTGGTGAGAAACCACATTGTTGCCAAACTTGTGGGAAGTGTTTTCGAATGCGAAAATCACTGAAACGACATGTTCTTACACATACTAATGAAAAGCCTTTTGAATGTCTGGTATGCGGACAGCTTTTTGCTCAGGAGCGATACCTGAAGAACCATGGAAAAACCCATGGAATtggaattaataataaaataacggCTTGA
- Protein Sequence
- MSGASENFELEAGSSGMMESSVMEGEEYYNPEGSEWSQKVDTGQLCRVCANANDYLIPIFDGEGLEHELGMKIEKHLPIKVTETDSLPQQMCYQCASTLIAWHDLVISCVEADKKLRELQVEDDDDDDGDDKGAEMFESPSLDAEMTDDAVQPSTSEVQSQVSKTPSPKKILLNKEKKPKLKMVLVKGHAAGTSGQKTSSKTQVAKALELAKSKDGSSQDSASERCQQPPQTPFKTFQEQNEMNMAGPRNTADALTDNGLVKNECTDSKDAWLTCDYCGHISAKKAELIIHISTVHPQELASLNIPAGCVSGSELECKSDVCEIKDCMYEGHNGRSFGKSRLGKVKHSAVANQQFPCSVCGRFFKRKSDACRHVEKHKLQDFVFKNVESLAGDLYGTSDSGLATENVQEFPDSEHLKSCLVEIRRNYENSLGTSNEKTNDSVICGKNKSFSCYVCGRKLTRKHDLLRHLKMHAKKLGSFVSSDVNYYTAGSIKKMVSGAQSGDRSSELSETDIIQGYPCHVCGRVLRGTFDLRRPLRKHSRKPDQVDGEFFQTLSNIGSGDDIPSGSLSSGNGPVSTLLEANDDSIHGSKVAVTEFVFNNERKTDLLCNICSKMLTRKYYLHRHLITHSKKQYLYSDDRLSDMGPAFVDGNAYSCSGDDAHLENSDGKTSTFDIHTSQNFSCSVCSKSFTRRFDLKRHAERHSSEDVDKIVSLKSSTDNVSLASAKVVIEGKTLYRCEHCCKYLMTRYSYVRHLRIHSGEKPCTCHVCGKQFRTSALLNRHVRDVHEGIKEHPCDICGRKFANKRAMLDHRRVHTGERPCVCHVCGKAFKTKASLYVHNLFHMDVFPHQCIHCNKSFRRRQQLNVHLLLHTGEKPHCCQTCGKCFRMRKSLKRHVLTHTNEKPFECLVCGQLFAQERYLKNHGKTHGIGINNKITA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -