Znev006416.1
Basic Information
- Insect
- Zootermopsis nevadensis
- Gene Symbol
- -
- Assembly
- GCA_000696155.1
- Location
- NW:348072-356379[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00032 0.012 15.5 0.1 1 20 118 137 118 138 0.94 2 13 0.025 0.91 9.5 2.7 1 20 146 165 146 168 0.94 3 13 1.5e-06 5.2e-05 22.9 2.0 1 23 174 196 174 196 0.98 4 13 0.0016 0.057 13.3 1.6 1 23 404 426 404 426 0.96 5 13 0.13 4.6 7.3 0.0 2 22 435 455 434 455 0.93 6 13 0.00044 0.016 15.0 2.2 1 20 495 514 495 517 0.92 7 13 0.00083 0.03 14.2 0.1 1 23 522 545 522 546 0.96 8 13 3.2e-06 0.00011 21.8 0.5 1 23 551 573 551 573 0.98 9 13 0.0029 0.1 12.5 5.5 1 23 584 606 584 606 0.97 10 13 0.019 0.66 9.9 1.2 3 23 614 634 612 634 0.97 11 13 0.00023 0.0082 15.9 0.1 1 23 640 663 640 663 0.96 12 13 0.025 0.9 9.5 0.1 3 23 671 691 671 691 0.98 13 13 4.9e-05 0.0018 18.0 0.5 1 23 769 791 769 791 0.99
Sequence Information
- Coding Sequence
- atgaatacagaatcCGAAACAGTTAATGGAATCAACGAAGAAAACATTCAAAGTGGGGCGATTTCCAATGACGACTGTCACAATGGCGAACTTGATACTCAGTTTGAATGTAAACAGGAGATACATAGTGAAGGGGAAGATGAACAAACGTGTGTGGACAAGCAACAGATGACAGTAAACTATACAGAGGTTTCAATTAAAGAAGAAAGCAATGACCCCAAAGGAACCACAGAGGATGAAAGCATGGCGGTGGAAGCTCTGCGGCAACTTGGCGGTATGTTTGAGAGTGTACCAGCCCCAGACCAACTACCACCACAAGCAGCACCAGAAGTAGGAACACAATTTCACCAGCATATCTGCAGCATCTGCGGAGAGAGCTTCGAGCGGAAGACCGACCTGGGAAATCATATTGTGTGTCACCAGGTCGATCGCCCTCATGCTTGCAGGACATGCGGTAGCCTATTTCGCCGGAAAGCAGACCTTCAGAACCATATGGTATGCCACCAGGTGGAACGTCCACACAGATGTCCTCACTGTGGAGCAGATTTTCAACGACCATCAAGTCTCACAAATCACATGAAGATTCACACATATTTTCCAGGACGTGCATTGCTCTCTTCAAACATGTCCACTCATTCTCCAGTACCAAATTACTTCTCACAGACAACAGCACCACAACCAAATCAGCCCATTCCCACTAAAGTCTCATTTATATCATTGCCATCCTATAATGGATGGGATGTAACGTATACATGTGAACCAGACTCTGACCCTATTGCCGATGAAAATGTGTTAGCCCAAAATCAGAACCTTCAAACACCAGCTACAAGCAATCATGAACTAAATTACCAGCCCATGGAACCGAAACACTACCCTCAAATTTCAGGTATAAGTGAAAATATTCCTCAGTTTGATTATGGGGCAAACTCAGGACCTGCTATAAGTAACATTTCGTCTCCCACAACTGTAGCACAGCATGGGAACAACAACCAGACAAGatgtgatattaataattttggtaaTGTAACACAAGTTGACTATATGACAAAAGATGGCAACTTAAATTTCAGTTCTGAGGAATATAGAGAAACAGCTGTTAAAATAGAATCGATGCCATATGCACCCACAGTGGAATGTTCCTCAACAGAAGAAACATACACTTGTCCTCCAGTAACAGAACAGCCACCTGTTGATACCGCTCGTCGTCCGCACATCTGTCGCCACTGTGGACTGGGCTTTGCGCGTGAGAAAGCCCTAGAATCGCATTCACGCTTGCACCGGGACCATTGGGGTAGCCCTATAGAATGTGACAAGTGTGAGGAAATGTTTCCGGAAGACATCTCCCTTCGTCAGCATCAAGAGACTTGTCTTGGAAAAGTGGCACGAACCTCACCACAACAGCTGCAGACTAAGAGATCTAAGATGATCCCGTGCTCTGTGAATCCAAGTACAAATGTTGCACAGCCAGCCAAACTGGGAAAACATGCTTGCATGGAATGTGAGAAAAGATTTACCACCAAACAGAAACTGTTTAGGCACATGTGGATCCATCGGAAGCGTCCTTATGCATGCGAGGTGTGTGGAATCAGTGTAGCAGATAGTGGGACACTGGATGAGCATCGTCGCACCCAGCACCATGCCAAGACACCCTATACATGCAACAAGTGCGGCAAAACCTTTGCCAGACGACAAGGACTGTGGGAACATGGTCGTTTGCACGCAGCTAAAGGGACATCAGGCAGATCACCGTTCGTGTGCCAGTattgtggaaaatgtttttcaaGCCGCCAAGGTCATCTTATTCACACTCGTACTCACACCGGGGAACGTCCTTATGGTTGTCGCTTCTGTTGGAAGGCTTTTCATGATGGGGGAACCCTCCGTAAACACGAACGAATTCACACGGGTGAGCGCCCTCATGTCTGCCCACTTTGTCCTCGAGCGTTTAACCAGAAGGTGGTGCTGCGTGAACACGTCCGCTGGGTTCACGCGGCTCGGAATTCACAGGGTTGTCAGCTGTGTGGCTACGTGGTTGGAGATAGAGAGGCTCTCTGTGCACATATTGTGAAGCATAGTGACCAGCTTGCAGCTGCTGCAAAGGCAGCAAAGGGGAAAGAGGAACCTCCCAAAACTGCTGATgcacaaaatgtttcagagagaGTAAATCCATTAGAACTTCCAGCTGGACTTCTACAAGAACCTTACAATTCATCAAACTATGTGTTCTTGCCCAGTGATGGATTAACGTCCGAACCACCAGATTCAGACATAAACCATACAAGTGTGGTAGagataaaaactgaatatacATGTGATATGTGTCAAGAAGTTTTCAAGTTCAGAACCGAACTGTTAGACCATGTTCGTATTCATATCTAG
- Protein Sequence
- MNTESETVNGINEENIQSGAISNDDCHNGELDTQFECKQEIHSEGEDEQTCVDKQQMTVNYTEVSIKEESNDPKGTTEDESMAVEALRQLGGMFESVPAPDQLPPQAAPEVGTQFHQHICSICGESFERKTDLGNHIVCHQVDRPHACRTCGSLFRRKADLQNHMVCHQVERPHRCPHCGADFQRPSSLTNHMKIHTYFPGRALLSSNMSTHSPVPNYFSQTTAPQPNQPIPTKVSFISLPSYNGWDVTYTCEPDSDPIADENVLAQNQNLQTPATSNHELNYQPMEPKHYPQISGISENIPQFDYGANSGPAISNISSPTTVAQHGNNNQTRCDINNFGNVTQVDYMTKDGNLNFSSEEYRETAVKIESMPYAPTVECSSTEETYTCPPVTEQPPVDTARRPHICRHCGLGFAREKALESHSRLHRDHWGSPIECDKCEEMFPEDISLRQHQETCLGKVARTSPQQLQTKRSKMIPCSVNPSTNVAQPAKLGKHACMECEKRFTTKQKLFRHMWIHRKRPYACEVCGISVADSGTLDEHRRTQHHAKTPYTCNKCGKTFARRQGLWEHGRLHAAKGTSGRSPFVCQYCGKCFSSRQGHLIHTRTHTGERPYGCRFCWKAFHDGGTLRKHERIHTGERPHVCPLCPRAFNQKVVLREHVRWVHAARNSQGCQLCGYVVGDREALCAHIVKHSDQLAAAAKAAKGKEEPPKTADAQNVSERVNPLELPAGLLQEPYNSSNYVFLPSDGLTSEPPDSDINHTSVVEIKTEYTCDMCQEVFKFRTELLDHVRIHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -