Basic Information

Insect: Zootermopsis nevadensis
Gene Symbol: -
Assembly: GCA_000696155.1
Location: NW:1053034-1061796[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.42 15 5.7 0.3 3 21 6 25 4 26 0.85

2 16 0.35 13 5.9 0.0 2 20 32 50 31 51 0.91

3 16 0.48 17 5.5 0.2 1 23 256 276 256 276 0.79

4 16 0.014 0.52 10.3 1.8 1 21 521 541 521 542 0.93

5 16 0.25 9.1 6.4 0.1 2 23 550 572 549 572 0.95

6 16 0.00091 0.033 14.1 0.9 2 23 596 617 595 617 0.97

7 16 0.0008 0.029 14.2 3.7 2 23 627 648 626 648 0.97

8 16 0.00017 0.0061 16.4 0.2 2 23 682 703 681 703 0.95

9 16 3.4e-06 0.00012 21.7 4.6 1 23 771 793 771 793 0.98

10 16 0.0039 0.14 12.1 1.3 1 23 799 821 799 821 0.96

11 16 0.0033 0.12 12.3 1.0 1 23 827 849 827 849 0.98

12 16 4.5e-05 0.0016 18.2 4.1 1 23 855 877 855 877 0.99

13 16 1.3e-05 0.00045 19.9 1.4 1 23 883 905 883 905 0.98

14 16 0.00018 0.0066 16.2 1.1 1 23 911 933 911 933 0.98

15 16 4.1e-05 0.0015 18.3 0.4 1 23 937 959 937 959 0.98

16 16 1.6e-05 0.00056 19.6 0.8 1 23 971 993 971 993 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.42	15	5.7	0.3	3	21	6	25	4	26	0.85
2	16	0.35	13	5.9	0.0	2	20	32	50	31	51	0.91
3	16	0.48	17	5.5	0.2	1	23	256	276	256	276	0.79
4	16	0.014	0.52	10.3	1.8	1	21	521	541	521	542	0.93
5	16	0.25	9.1	6.4	0.1	2	23	550	572	549	572	0.95
6	16	0.00091	0.033	14.1	0.9	2	23	596	617	595	617	0.97
7	16	0.0008	0.029	14.2	3.7	2	23	627	648	626	648	0.97
8	16	0.00017	0.0061	16.4	0.2	2	23	682	703	681	703	0.95
9	16	3.4e-06	0.00012	21.7	4.6	1	23	771	793	771	793	0.98
10	16	0.0039	0.14	12.1	1.3	1	23	799	821	799	821	0.96
11	16	0.0033	0.12	12.3	1.0	1	23	827	849	827	849	0.98
12	16	4.5e-05	0.0016	18.2	4.1	1	23	855	877	855	877	0.99
13	16	1.3e-05	0.00045	19.9	1.4	1	23	883	905	883	905	0.98
14	16	0.00018	0.0066	16.2	1.1	1	23	911	933	911	933	0.98
15	16	4.1e-05	0.0015	18.3	0.4	1	23	937	959	937	959	0.98
16	16	1.6e-05	0.00056	19.6	0.8	1	23	971	993	971	993	0.98

Sequence Information

Coding Sequence: ATGGGAACTTTAGTCTGTCCGTTGTGTTGTGATGAAGAATTTTCAAACCAGCTGTCACTCAGATATCACTTACTGAGTATTACAGATAATGTGTACTGTCCTGAATGCAGTCAGCGGTTTGATAGCATTCTCCAGCTTGCTGACCATTTGGATGGCACGTGCAGAAAAGGAAATTTTAGGAATAATGATGAAGAATGTACAGCAGACTCTGACATTAATACAGAAGACAGAATTGAGGAAGAGATGATGATAATACATGAAAGTGAAACACCTCAAACAGAAGTTGTCACTGTGCTAAATaatgcagaaaatattaagTCTGTTTTCCATGAGGAAGTAGTGGAACAGGTGATTGCGGTTGCTGCTGACACCCAGCTAGATGGTTCAGAATCAGTGTACCTTGTATCAGATGTTGGTGTTGAGGAAACTGCTGTTACTGGAATTGAAAGTGAATGTGCAGATATCACTGAACAGAAAGTGGATGTTGCAGTTGATCATGATAATTCAACTGTCGCTGTGGAAGAGAGTTATGCAAGcggaaattatgaaattactgTCAGGAGCACTGTCACAGCTGAAGAGGACTTACCAGTGAAActctgtgaccttgaaaaaaGTGAATTTGTGGGAGAGAGTAGTCAGGAGTGTGGTGAAGCTGTGCATAGTTTATCAACAGCTGGTGAAATGCTCAGAGGTAGCTCAGAATCTGAAACTGTTTTACCAGACGTGCAAGATCCAGCTGACGGACAGCTGGGTTGTGGGATTTATGCGTGTTCGAGCTGTGGAATTACCTTCAGTTCTGTTATAGAACACATAAGAATGTACCACGGTGGACAGGAAGTTGTTATTGAGGTGCCAGAGGTTAAGAAGAGTGCTCTTGAGAAGTTGATTGGGGCTTCAAAAGAAGTTTTGGGAACCAGTGCCGAACAGGTGATAGATATGAAAGTTTTACCAGGGTCAAATGATACCAGTGAGACAGCAGAGCTGCAAGAAACAACAGATGCTACAAATTTTATGTCTGGTTTCTCTGAAATTTATCCTGAAAACCAGATGGCTACGTTGGATTGTGCTGCTGTTAACAGtgaaacacatgaaaatacCAAACCATGTTCGTGGTTTAAGGAGAGGAATCGAGTTGTTGCggatgaagaaaaaataaagcaaattgtTCCAGATCCGAAACGGGTCGGTGCGCCTGCTCATACAACAGAAAAGCATTTAACTAATGAGCTGAAATATGTCGGTAAAGAAGTGAAAATTGACAAATTCTGGGAAACTAAACAGGATGAGGAAATGAACAGTGAAAATGCCAGCACAGGAAATAAAGTTAAAGTGTCTGCGTCATCCTTACCTGCTAgactgaagaaggaaaatagGAGATTGGTTTTGAAGAGGGACACTAGGACCAGTATCGAGAAATTATTTAGtggtaattttttattaaaggGAACAGGAGGTCGTGGAACTAGGCCAGGACCTTATCTTGGTGTAAATAGAGTTCCAGAGGTAAAAGTAATCATGAGTCCTGGTGATAAAGGAACAGAGAATGCAATCTCTGTGTTTACATGCAGTACGTGTCAGAAAGAATTCGGTAATGTATCTGCGTTCGAGAGGCATTCTTGTACTGTCGCTAAAGGTTGTACGATGGTTTGTAAAATGTGTGATATGGATATTAGTGACATGAAAGCAATGAGAGTCCATATGGAGTCTGTTCATAACATTAAGACGGAGGTTCTGAGTATGGCAAAGAGGAAATACAAAGTGCAAATGTTGCCCAAACCTGTAAAATGTGAATCGTGCGATATGACATTTACGACGCTGAGGGCTTTGAAACTGCATAGCAAGATGCATGAACGGACAGAACTGAAGGTCCCCCTGGAGTGCCCAGTTTGTCACAACATGTGTTCTAGCAACAGAACGTTGAAACAGCACATGAAAGTGCACACAAAACCGTTACCTGCGAGGAGGAGCGAAGATGACGCCGAGGCAGGGGAGGAGGATGCGATCGTTAAAGCCGAGAAGGGCGGGACGCACGGTTTGCTCGTGTGCAAAGTGTGTTACAAGTCATTTGGTAACAACGAGGACTTGCGAGTTCATTGGCAGGAACATTTGGTGAACGAAGAAGATGAAGAGGAAGAAAAGGAGGAGAATCAAGAGGAGCAGATGGATGTTGTTTTAAAGGAAGTCGCAGTACCTGAGGAGGAAGGTGTGCAGACTAAGAAAAACACTGTGCCATGTGTGAAGTGCCACAAGGAGATAGAGAAGAGCTGCAAAGAGGAACATATGGCAAAACATTTCTCACTTTTGAGGTATGACTGTCAAATTTGCAACAAGACCTTCAGTAAACATGGTCATCTCAACATGCACATGCGCATCCACAGAGGATTCAAGGAGTACTCGTGCATCCACtgtgacaaaatatttgcaaacaTGAACCTTCTCAGAACTCACGTCCAGTCTCACATGGTTGAACGACCTTATCAGTGTGGTTTCTGTGGACGCGGCTTCTTCCGACCTCATGACAAAGTGGAGCATGAACGCATTCATACAGGGGAGAAGCCCTATTCGTGCTCGATGTGTGGCATGCGGTTCCGAGTGCGCTACTGTCTGACCCTGCACATGAGGCGACATACTGGTGTTCGTCCGTATAGTTGCAAGATGTGCGGCAAGACATTCCGTACCGGCACGGCATTCAAGGCTCATACCAAGATCCATCTGGATGAACGTGCGTACAAGTGCCCCTTCTGCCCGAAGAAGTTCAACACGTTGATCCAACTGTCAGGCCACAAGAACAGCCACACGAAGCCGTACTCTTGCGCGGAGTGCAACCGGCCATTCTCATCTCTCTATGCGGTTCGAAAACATATGTCATCTCACGAGGATGGGGTCAGTGGCAAGGTCCCACTCAAGTTCCAGTGCCACGTGTGTGGGGCGTCTTATGCTCGCAGGTTTGCTCTCAGGGATCACCTCAAGGTCCACAGCCACAACATTCCTCCAGCAACAACTGATAAAACTTGCTCCAATGATTCATCAAGCGATGTGTCATGA
Protein Sequence: MGTLVCPLCCDEEFSNQLSLRYHLLSITDNVYCPECSQRFDSILQLADHLDGTCRKGNFRNNDEECTADSDINTEDRIEEEMMIIHESETPQTEVVTVLNNAENIKSVFHEEVVEQVIAVAADTQLDGSESVYLVSDVGVEETAVTGIESECADITEQKVDVAVDHDNSTVAVEESYASGNYEITVRSTVTAEEDLPVKLCDLEKSEFVGESSQECGEAVHSLSTAGEMLRGSSESETVLPDVQDPADGQLGCGIYACSSCGITFSSVIEHIRMYHGGQEVVIEVPEVKKSALEKLIGASKEVLGTSAEQVIDMKVLPGSNDTSETAELQETTDATNFMSGFSEIYPENQMATLDCAAVNSETHENTKPCSWFKERNRVVADEEKIKQIVPDPKRVGAPAHTTEKHLTNELKYVGKEVKIDKFWETKQDEEMNSENASTGNKVKVSASSLPARLKKENRRLVLKRDTRTSIEKLFSGNFLLKGTGGRGTRPGPYLGVNRVPEVKVIMSPGDKGTENAISVFTCSTCQKEFGNVSAFERHSCTVAKGCTMVCKMCDMDISDMKAMRVHMESVHNIKTEVLSMAKRKYKVQMLPKPVKCESCDMTFTTLRALKLHSKMHERTELKVPLECPVCHNMCSSNRTLKQHMKVHTKPLPARRSEDDAEAGEEDAIVKAEKGGTHGLLVCKVCYKSFGNNEDLRVHWQEHLVNEEDEEEEKEENQEEQMDVVLKEVAVPEEEGVQTKKNTVPCVKCHKEIEKSCKEEHMAKHFSLLRYDCQICNKTFSKHGHLNMHMRIHRGFKEYSCIHCDKIFANMNLLRTHVQSHMVERPYQCGFCGRGFFRPHDKVEHERIHTGEKPYSCSMCGMRFRVRYCLTLHMRRHTGVRPYSCKMCGKTFRTGTAFKAHTKIHLDERAYKCPFCPKKFNTLIQLSGHKNSHTKPYSCAECNRPFSSLYAVRKHMSSHEDGVSGKVPLKFQCHVCGASYARRFALRDHLKVHSHNIPPATTDKTCSNDSSSDVS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -