Basic Information

Insect: Zootermopsis nevadensis
Gene Symbol: -
Assembly: GCA_000696155.1
Location: NW:169236-176765[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00019 0.0068 16.2 0.3 3 23 421 441 419 441 0.97

2 11 0.00062 0.022 14.6 0.8 1 23 443 465 443 465 0.95

3 11 3.6e-05 0.0013 18.5 4.1 1 23 470 493 470 493 0.97

4 11 0.00088 0.032 14.1 0.2 1 23 499 521 499 521 0.96

5 11 0.0006 0.022 14.6 6.8 1 23 527 549 527 549 0.97

6 11 6.2e-06 0.00022 20.9 5.2 1 23 555 578 555 578 0.98

7 11 0.0014 0.05 13.5 2.9 1 23 593 615 593 615 0.96

8 11 6.1e-07 2.2e-05 24.1 1.6 1 23 622 644 622 644 0.95

9 11 2.8e-05 0.001 18.8 1.0 1 23 650 672 650 672 0.98

10 11 8.2e-07 2.9e-05 23.6 2.4 1 23 678 700 678 700 0.97

11 11 0.00022 0.008 16.0 1.6 1 22 706 727 706 727 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00019	0.0068	16.2	0.3	3	23	421	441	419	441	0.97
2	11	0.00062	0.022	14.6	0.8	1	23	443	465	443	465	0.95
3	11	3.6e-05	0.0013	18.5	4.1	1	23	470	493	470	493	0.97
4	11	0.00088	0.032	14.1	0.2	1	23	499	521	499	521	0.96
5	11	0.0006	0.022	14.6	6.8	1	23	527	549	527	549	0.97
6	11	6.2e-06	0.00022	20.9	5.2	1	23	555	578	555	578	0.98
7	11	0.0014	0.05	13.5	2.9	1	23	593	615	593	615	0.96
8	11	6.1e-07	2.2e-05	24.1	1.6	1	23	622	644	622	644	0.95
9	11	2.8e-05	0.001	18.8	1.0	1	23	650	672	650	672	0.98
10	11	8.2e-07	2.9e-05	23.6	2.4	1	23	678	700	678	700	0.97
11	11	0.00022	0.008	16.0	1.6	1	22	706	727	706	727	0.96

Sequence Information

Coding Sequence: ATGATGGTTGTGGTGGGAGATAAAAGAAATGCTAATTTGTGTGATAGTAGGGGAAAAAATGATAGTAACAGTACTGCAAACATTGGAGAAACCAGTTATATGTGTGGGGGGATACTCAAATGTAACAGTGTTACCACAAACAAAGAAGAACCTTACAATTttagtgaaaaattgaaaacagaTGTCAATGCAAATATGGGAGGAGGTTATTTTTCTAGTCAGGCACCCagaaataactttgttttaaacagTGGACAGAAGAGTCTTATATGTGAtgaatttaataagaaaattaatgctACTAGAAACTTGAGTCAATTGAAGCATCCCCATAACTTTTCTTTAGTGCCAGCACAGCGGAGAGAAGTAAGTAATATATCGCTACCAAACAATGATGAGGAGAATGATATTTATGCAAAGACTCTAAAATGTACCTCAGTTACCATCAGTGGAGAAAGTAGTTTCAATGATGgtgaaactttaattaaaagtgATGCTATTTCAGACGATGAAGAAATCATCTATTGTGGTGAGGTAGTCAGTGGTAAGTCTATTGGAAATGATAGGCAGAAGAGTTACATGTGTGATAAACTGACCAAGAAAAGTGACACTACTGCAGATTTGAGTGTGTTGAATTGGCCACAGAATGTTACAATACCAGCAGTGCAAAGAAAGACAATGCTTATAAAAGGAGAGACAAGAAGTGTGTCACCACCAAGGATtgatgtaaataattacatttttgatgCAGCCCCTGAGAGAAGTAATAATACAGAAAGTTATGTTGGAGGAAGTTATGTTCGTTGCAATACACTTAATAGTAATCTGGTTGCAATCATTGGGGGAAAATCACATGTTTCCAGTGAGGATGTCAAAAGTAACACAGTTACAAGCATTGAAAGGAAGGCAAGTGCTTCTGGTGATACACTCAAAAGTAATGCTGGTGATGAGACTGTGAGATGCAATGCTGTTGCAAATGCTGGAAAAGAAAGTGTTGATCCTTATGTAAAATTAGGCGAGGGTACCACTACTGAGAAATTGGGCACATTTAATCAGCACCAGAAATTTGCTCTGCTACCAACAACATTGGGTTGTATGATAGTTAAGCTGGATAAAACAAGGCTTAACAGTAACAATAGAACTGATTATTGTGGTGATTCACTCAAAAATGACCCCGCAGAAAACAGTGCAGGGAATACCACATCTGAAAACCTACCATTAGGTGATGCAACAGTTCTTCCAGGTGATCAGCgccaaatatgttttatatgtggTAAAATATTTGACAAGGAATCAACACTTGATTTACACTTAAAGACACATAACTTTTTGTGTGATATATGTGGTAAAGTTTTGTTGACATCAGATAAGCTGAGACGACACAAACGGTCACATAAAGAAAGACTATTTACTTGTGACATCTGCAACAAGACTTTCAAATTCACTTACCAGCTGAATTCCCACCATAAGATAGTACATTCTGGCATTAAGAATCATATTTGCAATATATGTGGTTATGCAGCAGCATTTAAATCAGCTCTGAAGgcacatgaaaacaaacatcTACATGATTTCAGATATCATTGTGATGTTTGTGGTAAGGGTTTTCATGAGAAGCATCAACTCAAGACACACATGAACTTTCACTCAAGAAATCAGCcattttcatgtaatatatGCGGGAAGGCATTTTTTTACAAGCATTACTTAACTCGTCACAAACGAACTACTCACCCAGAAGTGCAGAAAGATGGCAGCACTAAGTCATTTGAGGGCCATGAGTGTGAATTTTGTGGCAGAgtgttaaaacacaaaaaaacttTGCTTCTACACATGGGTTCCCATACAGGAGGGAATCGTACTTTTCTCTGTGACATTTGTGGCAGGTCATTCAGGACCAATCATCAACTAGAGGCACACAAACGAGTTCACACAGGTGAAAAACCTTTTGTATGTGATGTCTGTGCTAAGGCATTTGGAAAAAAATCAAGCCTGAGAATGCATATGTGTGTGCACACAAGGGAAAAACACCACAGATGTGATGAATGTGGTAAATCATACACACAACAATCAAGTCTCATTGTTCACAAACGTTATCACACTGGACAGAGACCTTACCATTGCCTACTTTGCAATAAAGGCTTTGTGACTAAAACCCAACTTAAAATGCACCAGAACACAGTTTGTGTATGA
Protein Sequence: MMVVVGDKRNANLCDSRGKNDSNSTANIGETSYMCGGILKCNSVTTNKEEPYNFSEKLKTDVNANMGGGYFSSQAPRNNFVLNSGQKSLICDEFNKKINATRNLSQLKHPHNFSLVPAQRREVSNISLPNNDEENDIYAKTLKCTSVTISGESSFNDGETLIKSDAISDDEEIIYCGEVVSGKSIGNDRQKSYMCDKLTKKSDTTADLSVLNWPQNVTIPAVQRKTMLIKGETRSVSPPRIDVNNYIFDAAPERSNNTESYVGGSYVRCNTLNSNLVAIIGGKSHVSSEDVKSNTVTSIERKASASGDTLKSNAGDETVRCNAVANAGKESVDPYVKLGEGTTTEKLGTFNQHQKFALLPTTLGCMIVKLDKTRLNSNNRTDYCGDSLKNDPAENSAGNTTSENLPLGDATVLPGDQRQICFICGKIFDKESTLDLHLKTHNFLCDICGKVLLTSDKLRRHKRSHKERLFTCDICNKTFKFTYQLNSHHKIVHSGIKNHICNICGYAAAFKSALKAHENKHLHDFRYHCDVCGKGFHEKHQLKTHMNFHSRNQPFSCNICGKAFFYKHYLTRHKRTTHPEVQKDGSTKSFEGHECEFCGRVLKHKKTLLLHMGSHTGGNRTFLCDICGRSFRTNHQLEAHKRVHTGEKPFVCDVCAKAFGKKSSLRMHMCVHTREKHHRCDECGKSYTQQSSLIVHKRYHTGQRPYHCLLCNKGFVTKTQLKMHQNTVCV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -