Basic Information

Insect: Zootermopsis nevadensis
Gene Symbol: -
Assembly: GCA_000696155.1
Location: NW:110895-118177[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.056 2 8.4 0.6 2 23 116 138 115 138 0.96

2 10 0.0043 0.16 11.9 0.9 1 23 144 166 144 166 0.98

3 10 2.6e-05 0.00093 18.9 4.8 1 23 172 194 172 194 0.97

4 10 2.3e-07 8.4e-06 25.3 0.8 1 23 200 222 200 222 0.98

5 10 4.5e-07 1.6e-05 24.4 0.7 1 23 231 253 231 253 0.98

6 10 1.5e-07 5.5e-06 25.9 0.3 1 23 259 281 259 281 0.98

7 10 3.5e-06 0.00012 21.7 1.5 1 23 287 309 287 309 0.97

8 10 3.9e-05 0.0014 18.4 3.2 1 23 315 337 315 337 0.98

9 10 2.6e-05 0.00095 18.9 2.5 1 23 343 365 343 365 0.98

10 10 0.00017 0.006 16.4 5.8 1 23 371 394 371 394 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.056	2	8.4	0.6	2	23	116	138	115	138	0.96
2	10	0.0043	0.16	11.9	0.9	1	23	144	166	144	166	0.98
3	10	2.6e-05	0.00093	18.9	4.8	1	23	172	194	172	194	0.97
4	10	2.3e-07	8.4e-06	25.3	0.8	1	23	200	222	200	222	0.98
5	10	4.5e-07	1.6e-05	24.4	0.7	1	23	231	253	231	253	0.98
6	10	1.5e-07	5.5e-06	25.9	0.3	1	23	259	281	259	281	0.98
7	10	3.5e-06	0.00012	21.7	1.5	1	23	287	309	287	309	0.97
8	10	3.9e-05	0.0014	18.4	3.2	1	23	315	337	315	337	0.98
9	10	2.6e-05	0.00095	18.9	2.5	1	23	343	365	343	365	0.98
10	10	0.00017	0.006	16.4	5.8	1	23	371	394	371	394	0.98

Sequence Information

Coding Sequence: TGTGCTCAGCAATTACTGGAGGAACAGCAACAAGTGCGGCAGGAACAGcagtatataaaagagaaagaaaggcAGAGAACGGGGCGTCCTACAACTGGCAGGAAGACACGCAGGGGTAGGTCAAAAGCTGCTCAGTCAGATTCTAAGCGGCAACAGCAACTGAAACAGGAGCAGGAGCAACAGGAAACAGAGGAGCACGAAGTTAAGCTGGAATTGGAAGAACTGGACCACCAACAGGAAGAAGAACATGCACAGGAAGaggaagaaaacaaagaacaagaaCAGCAACTGGATGATCCATCATCCCCTAGGAAACGTCGGGATGGGTGGGAAAAATATCCGTGGATGTGTACTGATTGTTCTCAGGAATTACCAAGTATGCAAGCACTGCGTACACATCACCAGACAGATCACAATCAAGCTCCTCGGTTTATGTGTGCTCAGTGCTCCAAGGTTTACATTAAGTACTATGGTTTTGTTAGTCATGTACGGCGGCATCGCAACCATATGAAATTCTGCTGTGAAGaatgtggaaaatgtttttcaaacaAGAAAGTTCTTGAGTCACATCGTGCCACGCATTCAGATGCACGTCCATTTGTCTGTTCAGAATGTGGCAAGACCTTTCGCCAACAGAGTGCACTCTATGTTCACAACCGGTCCCATCAACCTGAAGAAGTGAAAAATAGATATCCCTGTGACCAGTGTGATAAGCGGTTTTCAACAAAACCAAACTTAGTTACACACAAACGAATCCACACAGGGATTCGTAATTTCACATGCGACCAGTGTGGCAAGAGTTTTATCCAAAAGGGTAATCTGGATGCCCACCTGCTCACACATTCATCAGACAAACCCCATTCCTGTCCTGTATGTAATAAGGGGTTTAAGACTCCACTTCAGTTGCGGAAACACCAAACAGTACATACAGGTGCGAAACCACATCAGTGTGATGTGTGTGGCCGTCAGTTCCGTGAACGAGGGACATTGAGGGAGCATCATCGTATCCATACTGGTGCAATGCCTTTTACTTGTGAATATTGTGGTAAAAGTTTCCGCTTCAAGGGTATACTTACGACACATCGCCGTCAACACACAGGTGAAAGACCATACTCTTGTTTGGAATGTCAGCATCACTTCACCAATTGGCCCAACTACAATAAGCATATGAAACGTCGGCATGGTATAAACACAAGTCACCAACCAGATCCTAACAAAATTGCGGTGGCAGCAGCCGCAGCCGCAGCtgaagcagcagcagcagcagcaagtAACAGTACTCTTCCCTCTGTTGTGTCTGCCACTATGGCAACCCACAATATCTATGTAAATCAGAGCTCAAACACAGGACATGATGAACATCTAGTGAACCGTGGTGATCGTGGAGTGCAGTTTTATAACCCAGCCCCTGTGCCCCCATACGCGGCAGCTCCATTACCTGCAGGAACAATGTTAGGATTCTACAATATTCCTCAGTTACAACAGAGTATGGACACAAGTACCATTGAAATGCTACATTCTGTGCAGCAAAGGTAA
Protein Sequence: CAQQLLEEQQQVRQEQQYIKEKERQRTGRPTTGRKTRRGRSKAAQSDSKRQQQLKQEQEQQETEEHEVKLELEELDHQQEEEHAQEEEENKEQEQQLDDPSSPRKRRDGWEKYPWMCTDCSQELPSMQALRTHHQTDHNQAPRFMCAQCSKVYIKYYGFVSHVRRHRNHMKFCCEECGKCFSNKKVLESHRATHSDARPFVCSECGKTFRQQSALYVHNRSHQPEEVKNRYPCDQCDKRFSTKPNLVTHKRIHTGIRNFTCDQCGKSFIQKGNLDAHLLTHSSDKPHSCPVCNKGFKTPLQLRKHQTVHTGAKPHQCDVCGRQFRERGTLREHHRIHTGAMPFTCEYCGKSFRFKGILTTHRRQHTGERPYSCLECQHHFTNWPNYNKHMKRRHGINTSHQPDPNKIAVAAAAAAAEAAAAAASNSTLPSVVSATMATHNIYVNQSSNTGHDEHLVNRGDRGVQFYNPAPVPPYAAAPLPAGTMLGFYNIPQLQQSMDTSTIEMLHSVQQR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01289175;
90% Identity: -
80% Identity: -