Znev002671.1
Basic Information
- Insect
- Zootermopsis nevadensis
- Gene Symbol
- -
- Assembly
- GCA_000696155.1
- Location
- NW:322614-337857[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.017 0.62 10.0 0.4 2 20 282 300 281 302 0.93 2 16 0.0027 0.096 12.6 7.6 2 21 308 327 307 328 0.93 3 16 0.00094 0.034 14.0 1.4 2 23 338 359 337 359 0.96 4 16 0.00019 0.007 16.2 0.7 1 23 372 394 372 394 0.98 5 16 9.2e-06 0.00033 20.3 7.7 1 23 423 445 423 445 0.99 6 16 0.00071 0.026 14.4 1.5 2 23 482 504 481 504 0.94 7 16 0.00012 0.0043 16.8 3.8 1 23 510 532 510 532 0.99 8 16 0.028 1 9.3 1.1 2 22 537 557 536 559 0.87 9 16 0.004 0.14 12.0 1.7 1 23 566 588 566 589 0.95 10 16 3e-05 0.0011 18.7 0.2 1 23 609 631 609 631 0.98 11 16 3.7e-06 0.00013 21.6 1.3 1 23 663 685 663 685 0.98 12 16 3.6e-06 0.00013 21.6 0.9 1 23 693 715 693 715 0.98 13 16 1.5 56 3.9 2.6 1 20 721 740 721 742 0.90 14 16 0.00026 0.0095 15.7 0.7 2 23 779 800 778 800 0.97 15 16 1 37 4.4 0.5 1 23 826 848 826 848 0.85 16 16 0.00033 0.012 15.4 0.6 1 23 857 880 857 880 0.96
Sequence Information
- Coding Sequence
- ATGGATAACAGGAATGATATTGTCAAGTGGGCAAATTCTTGCCGTTTATGCCTTCTTGATGATGGAATTAAATTGCCTATATTTGAAGGAGAAGGAATTCAAAGACAAGTTGCACGTAAAATACTAACTTGTTTTCCGATTGTGATATATGTTGCAGATCCTCTGCCAAAGATGATTTGCCATAAATGCCTGTATAAATTGGACACTGTATACAATTTTCGTCATAAGTGTCTTGAAGCTAATGCTGTTCTGAAAAAACAATTACTGACCATGACACATATGGCTGAAGTGAAGGAGTATCTGGATGCTTTAGAATCTGTTTCTAGTTTGAGAAAGGTGACACAGAAGCCATTATCACCTGTAATAAGACAGGTAAAGACATCTCAGAATGTGTTCCCTGGCAGTAAGGGCCCACTCAAAGAAGATGAAACGGGTTCTCCACAGTTTGGCAATAATTCGGAAAATGTGTTCCAAGAAGTGTTCCTGACAGACTGCtcaaatgatatattttttcctgAGCAGAGCTCTGATGATACTGTGCAGGTGAATGAAAATGGAACTAATTTGTCCAAATCACCCAGCAGGGATCAGACTGTATTTACAGCACCTGCTAATTCTGTGAGATTCATCGCTGCAAATCCTGATGACATTGCTGCAACGTCCCATGCCACCATGACAAAGCAGGAACCTgaagatgaaattttgaaagagaaTTCTCTGGAGGGCTCAGTCACATCTCAACCATCTTCACCACTCTCTCAACCAAGAAATGACACTCTGCCAAACACAGATTTGGAACCTGTGTCTGTGGATCTAGAAAAGGTGAAAGAAGAAGCAGTTACAGAATGTTCAAAgtgcaaaattatatttcaagataAAGGACAGCTGCAGGAGCACGTGTGTGCGGTGGTGTCTCAGTGGAGTTGTGAGCACTGCAATAAGTGCTTTAAGTCAAAACATACACTTTACAAACATAAGAAGTACTTCTGTCCCAAGAAGAAGAACAGCTGTGTATGCAAGGGTTGTAGCAAGGTGTTCAGTTCTGTGATTGAAATGGCAAAGCACCAGAAACAGCATCTCAGagtctgtctctctcttcaaGAGGAAAGTCTCTACACTTGCACTGTGTGTGAAAAGAAATTTGCAGCAAGATCCATGTTGGAGATGCACAAGAACTCTCATTTTCCAGggaatttaaacatgaaacaaGCTGAAAGATTTTCAGTCCAACCAAACGTTTCACCAGGAAAGGTACtgataaaacagtttaaatgtCGGCATTGTCCAAAATCatatacaagaaaatacaaattaaaatatcacatgaAAACTCATTTTTCAGAAGCGCACAATAGTAGTGTGCCTGAATTGTCAATGGAAACCAAgcaggaaaataataatgatagaGATAATGACGCTGTATCACAGTGTTTGATGAAATGCAGCTGTAAGTACTGTGGATATGTCTGTGACGATTCTGCCGCATTGTGGCTTCACATGTTGCAACAGCATAGCTCTGTAAAGTCATACAAGTGTGATAAGTGTGGCAGGGATTTCCATCGTCTGCAAGCTTACTCCAATCACATGAAAACACACAATGTCAAGATGAGCTGCAGGGTGTGTGGGAAACACTACTCATCAATAAAGGCTCTGAGAGAGCATGGCTACAATAAACATACAATTCAGAAGGCCATGCATCAGTGTAGGTTATGTGCACAGAGCTTTGCAACACGATCTGCACTTTTAATTCATGGTAGAGACCATCACGCAAAGGGCAAAAGCAGTGCTCCTTTGTCAGAAGACTCTCAGGCAAAGGTTGAAACATTTCCCTGTAGTCTCTGCAGCAAAAGCTTTCCAAGCACAGTGACCCTCGTGGCACACATGCAGATGCACGTTGGCATGGAAATGGGAAATGGGAACTTGGATAACTTGGACCAGGGACCTGTTCCTCAGAGCAGCTGTAAGAAAGAGGAGCAGCATTATCCTTTCACATGTAAAATTTGCTTCAAGTTATTCAGTAATAAGGGCGGTTTGCAGCGCCACATAAAGATACATGCTCCAAAAAAACATGTGTTCTATCCCTGTAAAATATGTGGTAAAAAGTTTGTATCTGAATCTACATACAAAACTCATACAGCCACACATGTGGTATCTGTTCCATTTCATTGCCCTCAGTGTAATCAAATTTTCTTCAAGGAAGAAGTATTTAAGAGTCATGTGTGTGAGAACACTGGAAATCAGGCTTCTTTAACATGTGGGGTTCTGTTGACAGAAGAAAAGCACCTAAATCATGTTTGTGATGGGAGTAATTTGAAGAGTTCAGAGTTATTATTGAAATGCAGCATCTGTTCTGCAGTATTTAGTTCCTTAAAGTCACGGAACAATCACATGAGGATCCATTTGAATCGGAGCATGCCACTAACAGCTCTCCCATcaaatgtgaataatttgtGCAGTAGAATGAGCAGTGGCTTATACAAATGTAATCTCTGTAGCAAGCGGATGGTGACACAGCATGCTGCAGCAGGACATGCAAAATGGCACTACCAGCCACAACCTGTGAAGGCCTTTGAGTGTCCTTTCTGTAACCGCAGATACACAACAGAGACTGGACTCTACACTCACATTTCTGTTCAACACCCAGATGTTCCTgggtag
- Protein Sequence
- MDNRNDIVKWANSCRLCLLDDGIKLPIFEGEGIQRQVARKILTCFPIVIYVADPLPKMICHKCLYKLDTVYNFRHKCLEANAVLKKQLLTMTHMAEVKEYLDALESVSSLRKVTQKPLSPVIRQVKTSQNVFPGSKGPLKEDETGSPQFGNNSENVFQEVFLTDCSNDIFFPEQSSDDTVQVNENGTNLSKSPSRDQTVFTAPANSVRFIAANPDDIAATSHATMTKQEPEDEILKENSLEGSVTSQPSSPLSQPRNDTLPNTDLEPVSVDLEKVKEEAVTECSKCKIIFQDKGQLQEHVCAVVSQWSCEHCNKCFKSKHTLYKHKKYFCPKKKNSCVCKGCSKVFSSVIEMAKHQKQHLRVCLSLQEESLYTCTVCEKKFAARSMLEMHKNSHFPGNLNMKQAERFSVQPNVSPGKVLIKQFKCRHCPKSYTRKYKLKYHMKTHFSEAHNSSVPELSMETKQENNNDRDNDAVSQCLMKCSCKYCGYVCDDSAALWLHMLQQHSSVKSYKCDKCGRDFHRLQAYSNHMKTHNVKMSCRVCGKHYSSIKALREHGYNKHTIQKAMHQCRLCAQSFATRSALLIHGRDHHAKGKSSAPLSEDSQAKVETFPCSLCSKSFPSTVTLVAHMQMHVGMEMGNGNLDNLDQGPVPQSSCKKEEQHYPFTCKICFKLFSNKGGLQRHIKIHAPKKHVFYPCKICGKKFVSESTYKTHTATHVVSVPFHCPQCNQIFFKEEVFKSHVCENTGNQASLTCGVLLTEEKHLNHVCDGSNLKSSELLLKCSICSAVFSSLKSRNNHMRIHLNRSMPLTALPSNVNNLCSRMSSGLYKCNLCSKRMVTQHAAAGHAKWHYQPQPVKAFECPFCNRRYTTETGLYTHISVQHPDVPG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -