Basic Information

Insect: Zootermopsis nevadensis
Gene Symbol: -
Assembly: GCA_000696155.1
Location: NW:899990-907611[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 21 1.2 42 4.3 0.9 1 23 178 200 178 200 0.97

2 21 1.1 40 4.3 7.8 1 23 206 229 206 230 0.96

3 21 0.31 11 6.1 0.5 1 23 250 272 250 272 0.97

4 21 1.5e-05 0.00053 19.7 2.9 1 23 278 300 278 300 0.99

5 21 0.0023 0.082 12.8 1.1 1 23 303 325 303 325 0.92

6 21 0.0053 0.19 11.6 3.3 1 23 526 548 526 548 0.98

7 21 1.2e-06 4.2e-05 23.2 2.3 1 23 556 578 556 578 0.97

8 21 0.062 2.2 8.3 0.8 2 23 586 608 585 608 0.91

9 21 0.021 0.76 9.8 3.3 3 23 614 634 612 634 0.96

10 21 0.035 1.3 9.0 2.9 1 23 640 663 640 663 0.95

11 21 0.00014 0.0049 16.7 6.2 1 23 676 698 676 698 0.98

12 21 0.093 3.4 7.7 0.8 2 23 706 728 705 728 0.92

13 21 0.064 2.3 8.3 4.7 1 23 732 754 732 754 0.91

14 21 0.012 0.42 10.6 1.5 1 23 760 783 760 783 0.94

15 21 0.023 0.81 9.7 2.5 3 23 788 808 787 808 0.97

16 21 7.1e-06 0.00025 20.7 0.3 1 23 815 837 815 837 0.97

17 21 2.8 1e+02 3.1 0.2 2 23 844 865 843 865 0.83

18 21 2.1e-05 0.00077 19.2 1.9 1 23 871 893 871 893 0.98

19 21 3.5e-05 0.0013 18.5 2.4 1 23 899 922 899 922 0.98

20 21 5.2e-06 0.00019 21.1 3.0 1 23 928 950 928 950 0.98

21 21 0.00013 0.0048 16.7 1.6 1 23 956 979 956 979 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	21	1.2	42	4.3	0.9	1	23	178	200	178	200	0.97
2	21	1.1	40	4.3	7.8	1	23	206	229	206	230	0.96
3	21	0.31	11	6.1	0.5	1	23	250	272	250	272	0.97
4	21	1.5e-05	0.00053	19.7	2.9	1	23	278	300	278	300	0.99
5	21	0.0023	0.082	12.8	1.1	1	23	303	325	303	325	0.92
6	21	0.0053	0.19	11.6	3.3	1	23	526	548	526	548	0.98
7	21	1.2e-06	4.2e-05	23.2	2.3	1	23	556	578	556	578	0.97
8	21	0.062	2.2	8.3	0.8	2	23	586	608	585	608	0.91
9	21	0.021	0.76	9.8	3.3	3	23	614	634	612	634	0.96
10	21	0.035	1.3	9.0	2.9	1	23	640	663	640	663	0.95
11	21	0.00014	0.0049	16.7	6.2	1	23	676	698	676	698	0.98
12	21	0.093	3.4	7.7	0.8	2	23	706	728	705	728	0.92
13	21	0.064	2.3	8.3	4.7	1	23	732	754	732	754	0.91
14	21	0.012	0.42	10.6	1.5	1	23	760	783	760	783	0.94
15	21	0.023	0.81	9.7	2.5	3	23	788	808	787	808	0.97
16	21	7.1e-06	0.00025	20.7	0.3	1	23	815	837	815	837	0.97
17	21	2.8	1e+02	3.1	0.2	2	23	844	865	843	865	0.83
18	21	2.1e-05	0.00077	19.2	1.9	1	23	871	893	871	893	0.98
19	21	3.5e-05	0.0013	18.5	2.4	1	23	899	922	899	922	0.98
20	21	5.2e-06	0.00019	21.1	3.0	1	23	928	950	928	950	0.98
21	21	0.00013	0.0048	16.7	1.6	1	23	956	979	956	979	0.95

Sequence Information

Coding Sequence: ATGCAGGGATGTGGCCCAGAATTCAAAGTACAAGGTGCAAGAAATTACGTTTCTTCAGAATCACAGTGCTTTGTTTGTGACAGTGTGATCTGTGGTAGAAGCATTCCTCTTTTAATGGGGATTGCACCCTACTCAAAAATAGCATTACCAACAAAAATTGGACAATTAATGGGAGACGGTTTTATGGTAATTGTAACAGCAGAAGATGTATTATGTCATCGTTGTTCATCGTTAATAATCCGCCTTGATAAATTGGAAGTTGATACAGACACTGTGAAGAAAGCACTGACTGgttatatgaaaatgaaatataatttgtatgagGAGGAGAATGAATCACACTTGTTGGATTACTCATACATGTGTGGAACTGAAGAAGagGTACCAAATGGCCCAGACAGTGAAGACCAGCTGATTTTCCAGGCTTTTAAGGGCATCCAGGCCATAGGTTCAGAAGATGAGGGCAGTGATCCTCACGCAAACATCAAACAAGAGGAAATTGATGAAAAAGATGGTTTAGATGTCACAGGGTATAAATGTGTGTCATGCCAGTATAAAACCACTAGTTCTGCAATATTTATGGAGCATTTAAAGATTCATTccaaagaaatgtatttcaaatgtTCAAACTGCAATGAAGAATTCCACAATCACTGTGAAATTCAGGATCACATAAAGAACGTGCATCACTCACAGTCACAGAGAAACAGAACAGATGATGTCACAGGCAGAATTCCTCACACATTTTATGAAtgcaatatttgtaaatttcagaGTCCTGACAGAACACTTTTTGACATTCATGTTTCTAAACACGACAGGGCACAATTTTATAAGTGTTCAGTCTGCAATAAACAACTGAAGTCAAAAACATTACTGAAGAAACACATGAACAGTCACAGAGTCTTCAAATGTGGATTGTGTAACctaacatttaaagaaaagaGCAGCTTACTGGAGCACTTCGTGCAGCACAGGATTTCTAAGGCTGTTCAAGTTAAAGAAGAGACGCAAGGCGGTGCAGATTCCAGGGACGGTCCTGAAGAACAGGTACAGGATAGCTGGCTGAATCATGAGCAGGATTATGACAGAGTAGAACAGCTGCTGGAACAGTTGCATGCTGAAGATCCCACCAGCAACCCTAAGATGAGAGATGACAAGAGTCCTCAAGATGAGGACATGCAGGGAGATGAGCAGAGACAAGCTGTAGATTCTGAAACTAATGTCAAACAGCACCATTCTGAAAGTGAAGACGCTTTCGGAGAAGTTcagaatgaaatgaatgaaGCAACTTTTTTGCTAGAAAATTCTGTTTTGGggcaagatgatgatgatgaatacgatgatgatgatgataacctATCAGCAGATATGGATAAAAATGATGACAGTGAAACTAACGATTTCCTTAATGATCCTTCTGATTATTTAGAAGACTTTCAGCAAAGCAGTAAGGAGCAGAAAGAGAATGAAGGGACGAATAAACATAAGTCTGAAGGTGTTGTTAATGTGCCTGGCGATGGAAGCGCAGACAATTCTAAGAACTTGTCTACGATGTCATTAAAGAAAAGGGTCTACGTGTGTTCTATATGCGGTTTGAGGACTTACACTGAGAACCACATGAAGAGACATTTCAAGAGCCACGTGGCTATCGAGAAAAAGATCTATGAATGCCACATATGTAACAAGGTATTAACAACCCGCAGTAACCTGAACAGACACCTTTCAAACCATGAGAATTGTCCTGGCATCGTGATGTGCAAACTGTGCAATGAAGAACTGACCGATAGACTGCACCTGAAGCAGCATCTTGAGGACCAGCACACAGGACCCCAACACTGTTCGTTCTGTAACATGGAATTCACAAGCAAGAGAGCGTTCAAAGAACATGAATTAACCCATCCAGAGAGAGCTATCCATCAGTGTGGCATATGCCACAAAAGATTCCTGACTCAACTTCGACTTAGGGTGCACATGGAAAACATACACGACAGGCCGAAAGATGGGGATGCAGAAGAGAAAACATTCAAGTGCCACATCTGTTCCAAGATTTTAACAACATATCATAACTTGAAAAGACATGTGAGGAACCATGAGAAGAGTTCAGGAAGTGTAAAATGTACTTTGTGCTCCGAAGAATTGACAGATAAGTTGCATCTGCGGCAACACGTCGAAGAGACGCACCCTGAAACTCACCAGTGTCCATTCTGTCAAAAggtgttttcaaataaaaaagtCTGCAAAGCTCATGAACTCTCTCACCCAGAAAGATATGTGTACAAATGTGACATGTGCGATAAGATGTTTCTGAATGAAACCAGATTAGAAAAACACAAGACCGTGTTCCACAGGGATCCTCACTGCCAATACTgtgagaaagaaataaaggatcCTACAAAACTGTTTAATCACGAACGACGGCACGAGATGTATAAGAACAAATTTCCTTGTCAGCAGTGTCCGAAGGTCTTTCGCACACCATCGGGTCTGAAGTACCACACGTCCATTCACACCGGGAAGTACGCAGTCTATTGCGAGATATGTGGCAAGGGGATGCACTCAGAGATTGTGCTGGAAGAACACAAAGCCACTCACACGAAAGAAATCCGTTACACGTGCGAACTGTGCGGGCGAAACTTCTCTTCCAACAGTACCTATCGGATGCACCGAAAATGGCACGACAACCCTCTGCCATACAAGTGCAAGATCTGCGATCGCAAGTTCAAGCATACTTCCATCCTAGCCGTGCACATGAGGCGTGCGCACACAGGAGAGCGTCCCTACAAGTGTCCCCACTGCCCATATACTTTCAGCGTGAGTAGCACCCTACACAAACACATAATCCTGCACACCAAGAAGTACCCCCACAACTGCAAGCTTTGTGGAAAGGGGTTCACCACTCGTACCAAAATTGCAAGACATATGGCAAAGGCGCACAATGACTTTGACATGCTGAATGCCAAGCCCACGCCATGCCAGTACAAGATGGTGCTGAAACCAAGTGAGCTGTCATCAGCAGACTCTGAGCTGAAGCAGGAGGAACAGCTTCCTGAGCCCAAGTTTGAGGAACGCAATTTAGAGCCTGGGCAGACAATCTTCTTGTTTCAGTAA
Protein Sequence: MQGCGPEFKVQGARNYVSSESQCFVCDSVICGRSIPLLMGIAPYSKIALPTKIGQLMGDGFMVIVTAEDVLCHRCSSLIIRLDKLEVDTDTVKKALTGYMKMKYNLYEEENESHLLDYSYMCGTEEEVPNGPDSEDQLIFQAFKGIQAIGSEDEGSDPHANIKQEEIDEKDGLDVTGYKCVSCQYKTTSSAIFMEHLKIHSKEMYFKCSNCNEEFHNHCEIQDHIKNVHHSQSQRNRTDDVTGRIPHTFYECNICKFQSPDRTLFDIHVSKHDRAQFYKCSVCNKQLKSKTLLKKHMNSHRVFKCGLCNLTFKEKSSLLEHFVQHRISKAVQVKEETQGGADSRDGPEEQVQDSWLNHEQDYDRVEQLLEQLHAEDPTSNPKMRDDKSPQDEDMQGDEQRQAVDSETNVKQHHSESEDAFGEVQNEMNEATFLLENSVLGQDDDDEYDDDDDNLSADMDKNDDSETNDFLNDPSDYLEDFQQSSKEQKENEGTNKHKSEGVVNVPGDGSADNSKNLSTMSLKKRVYVCSICGLRTYTENHMKRHFKSHVAIEKKIYECHICNKVLTTRSNLNRHLSNHENCPGIVMCKLCNEELTDRLHLKQHLEDQHTGPQHCSFCNMEFTSKRAFKEHELTHPERAIHQCGICHKRFLTQLRLRVHMENIHDRPKDGDAEEKTFKCHICSKILTTYHNLKRHVRNHEKSSGSVKCTLCSEELTDKLHLRQHVEETHPETHQCPFCQKVFSNKKVCKAHELSHPERYVYKCDMCDKMFLNETRLEKHKTVFHRDPHCQYCEKEIKDPTKLFNHERRHEMYKNKFPCQQCPKVFRTPSGLKYHTSIHTGKYAVYCEICGKGMHSEIVLEEHKATHTKEIRYTCELCGRNFSSNSTYRMHRKWHDNPLPYKCKICDRKFKHTSILAVHMRRAHTGERPYKCPHCPYTFSVSSTLHKHIILHTKKYPHNCKLCGKGFTTRTKIARHMAKAHNDFDMLNAKPTPCQYKMVLKPSELSSADSELKQEEQLPEPKFEERNLEPGQTIFLFQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -