Znev005421.1
Basic Information
- Insect
- Zootermopsis nevadensis
- Gene Symbol
- zfy1
- Assembly
- GCA_000696155.1
- Location
- NW:36301-44124[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 3.4e-05 0.0012 18.6 0.9 1 23 335 357 335 357 0.98 2 16 6.6e-05 0.0024 17.6 2.2 2 23 367 388 366 388 0.96 3 16 5.4e-05 0.0019 17.9 0.6 1 23 394 416 394 416 0.97 4 16 0.18 6.4 6.8 9.4 1 23 421 443 421 443 0.97 5 16 0.048 1.7 8.6 0.1 2 23 450 471 449 471 0.95 6 16 6.2e-05 0.0022 17.7 3.0 1 23 477 499 477 499 0.97 7 16 7.7e-06 0.00028 20.6 3.9 1 21 504 524 504 526 0.95 8 16 0.00015 0.0055 16.5 0.1 1 21 532 552 532 553 0.96 9 16 0.73 26 4.9 0.4 3 23 560 581 555 581 0.93 10 16 0.65 23 5.1 0.6 2 23 600 622 599 622 0.95 11 16 0.056 2 8.4 1.2 1 19 628 646 628 648 0.93 12 16 0.043 1.5 8.8 0.6 3 23 667 688 666 688 0.97 13 16 0.0098 0.35 10.8 0.6 1 23 694 716 694 716 0.94 14 16 0.0021 0.075 12.9 4.4 1 19 722 740 722 745 0.94 15 16 6.5e-07 2.3e-05 24.0 2.3 1 23 751 773 751 773 0.98 16 16 4.2e-06 0.00015 21.4 0.3 1 23 779 801 779 801 0.98
Sequence Information
- Coding Sequence
- ATGTCCTGCTGCATCGCTTTAAAAAAGTCAAAGAAAGgCACAAAACTGCAGTCTTTTGATCATGCCTATTgtagaaatgtaaatgaagtttcTTTGAAGAGAAATGTTAGAAATGCAGTATCAAATGAGAGGTTAACAGAAAACACTTCTGGAAGAGGAGAAATTGCAAGCAAGGAAGTATTTTTGAAAGGTTATGTAACAGAGGATAATGCAGACCATAATGTTGTAAGACATCTAAAAATGGAATCAGTCACTGAAAGCTGTAAGACTTCAACACAATTACCAGTACCAGATACAGCATATAATGATGTGGCTAAAGAACATGATTTGAATCAAGCATATATTTCGGACagtatacaaaatgtaatttcaaggaATCAAAAAGAGAGGAACAATAAATTAGCTTTAAACAGAGTGAATCTCCCATGCACAGAAACAGTCTTTTCTTGGGAAAGAATTTCATCTCAGATATGCAGATTATGTGCATGTGCAAATGAATTACATCCAAAACAGCCCATTGTTGGTTGGTTGGGCTTACTAGATGAAGTACTTCCTGGTGTGGTATCACTGAATGATGGACTTCCCCAACACATGTGCAGGCCATGTGCAAACAAGCTGTATACATGCAACCAAATAAAGGCTGAATTTATTAAAGCAGATCAAAAACTTCAAGGAATCATGGGATTTGTAAAGTCAGCAGGTCTTAATACTGGAACTGGCAACAGAATTCCCAAAGATTCAAATGCTGATGAAGGAACTTTTAATCCgacatttgataaaataaaagaatctgagtttttgtatgaagatggttacAACAGAGAGTATTATAGTGAAATTTATGAAGTACCTGTAACAAATGAAACTGATGCTTGTCCTGAGGTAGAAGTATATGTAGGCCAACAAGAAAGTCAGGAGATAAATGGCCATGCACAGGAAAGCTGTTATAATAAGATATTTTCTGAAGTATTGAAGCTTCAGAAGAATAgagtaaaactgaaatattcatGTGCTGAGTGTAAAGAGATGTTCtcttcaaaaaggactttaagTGCTCATAAACGGATACACATGAAATTTAAAGGCCCAAGTGAACTTATATGTGAATACTGTAGCAGAAAGTTTATACAGAAACATAAACTGCTTGCCCATCTTCGTTCACATACAAACGAGAAGCCTTTCATTTGTGAAAACTGTGGACAAGGTTTTCGAATCAAGGAAAGTCTTAAGAATCATCAGCTGAAACATAATCCTCCTAGATTTTGTTGTTACATTTGTGGTAAGAAATTTCACTGTCAGGCCAATTTAACTATGCATAAAAAGACGCATCTTACAGATACCAGACTAATTTGTGACATGTGTGGGAAAATTCTTTCTTCCAAGCTTATTTTAGAGTCTCATGTACGCTCTCACCAAGGACAGAAACCGTATCAGTGTACAGTTTGTGGCAAATGTTATTCTTCAGCCAATGCACTTAGGTATCACAAGTACAGTCACTCAACTAAAACATTTACTTGTGAAACATGTGGAAAAGTCTTCAAACGCAAGAGATCCTTAACAGAACACATGAACTGTCAtactaaacagaaaatgtacaaatgtcCAATATGCTTGAAGGCATTTGCAAATAGTGGTAACAAATGGAGGCATCTGAAGGTAACATGTAAAAAGATCCTTTGTGTTGTATGTAACCAGACTTTCCAAAACATTGACATGGTGGAGGAACATAGAGCCATGGCACATTCTGCGGAGGAGATTGCAGATGCTGCAAAAGAGTATCGAATGGAACAAATTCTACATTGTGAAGTATGCTTAGTTAGTGTTACAGGAACAAATAGTATGTTGAAACATATGAAGACAGCACACAgaatatatgaattatttacatgTGAACAGTGTAACAGATGTTTTTTAAATGAAGAACAACTTTTGCAACATGGCAACCCTTGCAAGTTGAAAAAGGTAGTGTCAGATTACTTAAAAGGTCCCCGTGGACattgtaaaatttgttctgaGCCTATATCTGGGACAGGCAATATGGTGAAGCATATGAGACGAGTTCATAAGGAATATAGGCCATTCACATGTGAGCAATGTCCAAAATCTTTCCTAACTAAACAAGAACTAGGACAACACAATATAAGTCACAGTGATTATCGCCCATTCTCCTGTCCCATCTGCCACACCAAATTTAAGTCTAAACATTCTCTCCATTGGCATGATATATCACTTCATCGGGATGTGTTCCCCTTTTCATGTCCTTATTGTGATCGTAAATTCAAAAGACAAACGTCTTTGGTTATACACAAGAGGACACACACAGGGGAGCGTCCTTATCCTTGCCCCTTATGTAAAAAGGCTTTTGCTAATAAAATTGACATGCAAAGGCATACCAACACACATTCCTATATCAAAAgaatgaagataaataaatag
- Protein Sequence
- MSCCIALKKSKKGTKLQSFDHAYCRNVNEVSLKRNVRNAVSNERLTENTSGRGEIASKEVFLKGYVTEDNADHNVVRHLKMESVTESCKTSTQLPVPDTAYNDVAKEHDLNQAYISDSIQNVISRNQKERNNKLALNRVNLPCTETVFSWERISSQICRLCACANELHPKQPIVGWLGLLDEVLPGVVSLNDGLPQHMCRPCANKLYTCNQIKAEFIKADQKLQGIMGFVKSAGLNTGTGNRIPKDSNADEGTFNPTFDKIKESEFLYEDGYNREYYSEIYEVPVTNETDACPEVEVYVGQQESQEINGHAQESCYNKIFSEVLKLQKNRVKLKYSCAECKEMFSSKRTLSAHKRIHMKFKGPSELICEYCSRKFIQKHKLLAHLRSHTNEKPFICENCGQGFRIKESLKNHQLKHNPPRFCCYICGKKFHCQANLTMHKKTHLTDTRLICDMCGKILSSKLILESHVRSHQGQKPYQCTVCGKCYSSANALRYHKYSHSTKTFTCETCGKVFKRKRSLTEHMNCHTKQKMYKCPICLKAFANSGNKWRHLKVTCKKILCVVCNQTFQNIDMVEEHRAMAHSAEEIADAAKEYRMEQILHCEVCLVSVTGTNSMLKHMKTAHRIYELFTCEQCNRCFLNEEQLLQHGNPCKLKKVVSDYLKGPRGHCKICSEPISGTGNMVKHMRRVHKEYRPFTCEQCPKSFLTKQELGQHNISHSDYRPFSCPICHTKFKSKHSLHWHDISLHRDVFPFSCPYCDRKFKRQTSLVIHKRTHTGERPYPCPLCKKAFANKIDMQRHTNTHSYIKRMKINK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -