Znev006375.1
Basic Information
- Insect
- Zootermopsis nevadensis
- Gene Symbol
- -
- Assembly
- GCA_000696155.1
- Location
- NW:541369-559986[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 34 8.1e-05 0.0029 17.4 2.9 1 23 226 248 226 248 0.97 2 34 0.039 1.4 8.9 3.4 1 23 285 308 285 308 0.93 3 34 0.00033 0.012 15.4 1.3 2 23 315 337 314 337 0.97 4 34 0.013 0.46 10.4 0.4 1 19 402 420 402 421 0.96 5 34 0.0065 0.23 11.4 1.2 1 23 555 577 555 577 0.98 6 34 0.11 4.1 7.5 3.3 1 23 594 617 594 617 0.93 7 34 0.0013 0.048 13.5 0.2 1 23 699 722 699 722 0.96 8 34 0.043 1.5 8.8 0.9 1 23 728 751 728 751 0.97 9 34 9.9 3.5e+02 1.4 3.7 1 23 763 785 763 785 0.95 10 34 0.0082 0.29 11.1 0.2 3 23 853 874 851 874 0.94 11 34 0.0065 0.23 11.4 0.7 1 23 896 919 896 919 0.94 12 34 2.5 89 3.3 3.0 2 19 926 945 925 950 0.85 13 34 1.6 57 3.9 0.0 2 23 959 981 959 981 0.91 14 34 0.069 2.5 8.1 1.0 2 23 988 1010 987 1010 0.94 15 34 1.2e-05 0.00042 20.0 2.8 1 23 1018 1040 1018 1040 0.97 16 34 2.1 74 3.5 0.1 3 23 1136 1158 1135 1158 0.94 17 34 0.0022 0.08 12.8 1.2 1 23 1161 1184 1161 1184 0.96 18 34 0.0041 0.15 12.0 1.1 2 23 1191 1213 1190 1213 0.96 19 34 0.067 2.4 8.2 4.6 1 21 1243 1263 1243 1264 0.96 20 34 8.4e-05 0.003 17.3 0.3 2 23 1291 1313 1290 1313 0.96 21 34 0.089 3.2 7.8 0.1 2 23 1317 1340 1316 1340 0.92 22 34 0.04 1.5 8.9 0.6 2 23 1378 1401 1378 1401 0.90 23 34 4.4 1.6e+02 2.5 1.4 2 23 1408 1430 1407 1430 0.86 24 34 1.1 40 4.3 2.8 2 23 1439 1461 1438 1461 0.92 25 34 0.011 0.41 10.6 0.2 1 23 1465 1488 1465 1488 0.93 26 34 0.00048 0.017 14.9 2.4 1 23 1613 1636 1613 1636 0.97 27 34 0.073 2.6 8.1 6.4 1 23 1646 1670 1646 1670 0.91 28 34 3.5 1.3e+02 2.8 1.4 2 23 1822 1844 1821 1844 0.92 29 34 1.7 61 3.8 1.4 2 23 1851 1873 1850 1873 0.95 30 34 3.4 1.2e+02 2.8 1.2 1 23 1884 1906 1884 1906 0.92 31 34 0.0005 0.018 14.9 5.1 1 23 1922 1944 1922 1944 0.97 32 34 0.024 0.86 9.6 2.1 2 23 1962 1983 1961 1983 0.97 33 34 0.00069 0.025 14.4 3.1 1 23 2021 2043 2021 2043 0.98 34 34 0.015 0.53 10.3 0.0 1 23 2070 2092 2070 2092 0.96
Sequence Information
- Coding Sequence
- ATGTCATGCCGACCAGATAATTACATGGAGCTCTGCAGGCTATGTGCATGTTATGATGCCatcaaaatggaaatatttggcGAGGAAGGGAGAGAAAGAAATCTGGTTGACAAGATACAGACATGCCTCCCTTTCCAGGTATCAGAGAGTGATAAGCTGCCGAAGTCATTATGCTATCGATGCATGTACAATCTTGAAAACTTCTATGACTTCCGGAAGAGGAGCGTCAATGCGGTTGCTCTTTTGGAGAGCTGTGTTGGGCAGTCAGAAGAGAACTCTGAAATGGGTGCAGAGCTGAAAGAACGGTTTGAGAGGCTTTGTAGCCAGTTGCGTCAAATTAAGGATGAAGGTGAAACGTGTGAGAAAGACATGCCCATGCCTCGTCTCGAACTTCAgTTTCCTGTTCCAGCGGTAAGCCCCGAGAAAGGACAGAATACTGAATCAGAACGGATGTATAAAGGTGCAACTAGCCCTACTAGTGAGCAATCGGATTTCCACCCACCGTCTGATGGCGAAGATGAAGTGGGTGTGGAGTGTGATGAAGATACAGACCAGGATCCTTCTGCGGATATTGAGGTGGCAGACAATACTAATGGCAGAAGAAAGGGTGCTCTTCATTCTGATAGGTACTGTGTGGGAGCGGGGGACCATGAACTACCTGAACATGAAACCCTTCATACTTGCAGTATTTGTAATAAGGCATTTTCTAGTAAAGGACATCTTGCACTTCATAATAAAATCCACATGAAGGAAACTGTGGAAGAGACCCATTCCAAACGCCCACGTCGTCAAACGAGCAGTCCCGCAGAAAACCTGATGGACCTTAACTGGAAGAGTGGTTACTATCGTCCTTACCGCTGCGATCTATGTAATAAGTCATATTCAACTGCTAAACATCGTTGGGGACATGTCAGTGTGTGTCATCGTGGAAATCCTCTGGTAACTTGCCCCATATGCGCAAGAGTCTTTTCTACATGTTATAATCTCGGAGAACATAAGAGAACGAAGCATGGCTTGGAGGAAGGAGAAATTGTTGATGTAAATTACAGCGATGCGGCTGTCGTTAACAGTACCGACTCTCTGAAACAGAGCAGCAAAAGGTCAAGTCCAACCACTGAAGATAACTTCCAGAAATCTGCAGGCAACTTGAAGTCTACTCAGAATGTGACCAGAAAGACATCGGTAAGCAACTCTGGAATTCTGCATACGTGTATGCAGTGTCTTAAGGTGTTTAAAACAGAAGGAGAGTTGGAAAGGCATTCTGTGTGCCACATAAGTAGAGGGTCTTCAGAAAACGCTAATCAGAATCCAAATCCAGAAGCTGGCAAGAAATCTGAAATTGGAAAGAAATCCGAGTTTACGAAAGGCTCGGAAACCGTCAGAAAGGTGGATCTAAAGGCAATACCGGGAATTAATAACGAAACAAGTTTATTGAAACAGACACTACTACAAAATCGGGAATCTGCCGAGATTAGATCAAGGAAGAGAAGCCCATCTCTGGACGCTGGTACCGATGATGTAAAGGTTAAAAAACGGGTAGGCTCATCAGCTGAGATGAGAAGTAACAGCGGCAGCCGGCGTAAGAGTTCAAAACCAAGAAAGATAGCGAGGAACGAGGAAGACAACGAGGACTTTGATCAGGATGGGAGGGATCTGAATACTTATGCCTGTGATAATTGTTCTCAAATTTTTCATACGTTATCAGAACTGCAAGGGCATAGAAGCACCCATGACATTGAAGAGCATACCGAAGCAGAAAATGTGAGTAACACGAAACCATTTACATGTCTCCTTTGCGAGAAAGATTTCTCCCTGCGCACGTCTCTTAGCCGACATTTTAATGCCTGCCACGGGATAGATCCTTCAGAGGTCATGGACATTTCAAAGTACCAACGAATACCTCAGAAGAAACAGGATACTTCCACTTTGGCCATAACTGAAAGTGGTCAGTCCACATCCAGGAAATTTGATGGCCAACAAAAACTTGGTTTCCAGAGGTCTAGCAGTCGGAGCAGTGTGGATAAAGAGGTAGCAGAGTTAGATGAGGATGATGATACATTGCTGCCTGAGAAGCCATCCGAATCACAGTCTAGCTTCATGTGTGAGGTGTGTACAAGGGAATTTGGTGACCGCGCTAGTCTCTGGCTCCACCTTCGATACACGCATAAGGAGTGCGCGGCGTACGCGTGTGGCATTTGTCTTCAGATATGTGAGAATAATACTCAGCTTTACCAACACTGGAGAACCTCGCACCCTCCTGATCAAAATTCGACAGATCAACGCCGTTATTGTTGTCAGATGTGCGGTAGACAGCATGATTACCGGAAGAAGTTGCTTGCGCACGTGTCTGTTCATAACCTTGACAATGGCGCTGGAGGAGTTTATGATCCTGAAATGCTTGTTACATTGAACACTGGGTTTTATAAATTTGAGAATCATGATGAAAATTCAGTGTTGAATGAATACAGACCTTCCTCAGAACAGGAAATTCTGTTGGAGTATAGTGGTGGCAAATACACAAATGTAAAACTCACTAAGGAAACTTCTTCATTCGGCTGTGAGTTATGTTACAAGTCATTCCCGACAGAGGATGGATTGGTGAAGCACAAGAAAGGTGCTCATAAAGTTAATTGCAATTTGGATGCAGGTACTCTAAGCAGTATCAGAGGCTCATACCAACTTTACTTTGTCTGTGAACTGTGCGGAAGCTCGTACAGTAGCAAATCTGATAGATGGAGGCACGTTTTCCGGTCTCATAGAGGCGAGTCTGCTTTGACGTGCGATAAACAAGGATGTGGAAAAGTGTTTCCTACGCGTACATTAAAACAAGAACATTGCACTAATCATCATCAGCTACAGGGAGCGACACCAAATGTTTGTGAGATATGTGGGAAGCTTTGGGGTACACGTGTGGATTTCTGGAAGCACCTAATGGGTGTACACTCAGATTGTGTGCCATTGACATGTGGTGTATGTCTGAAGATTTTTTGCACTGTTCCAGATCTTCAGGCTCATGTCCATTCAAACCATTTGCCACTAACTGCTGGGGACTTCTGTTGCGATATTTGTGGTCGTCCATATTCTAACAGATCAAAGCTTTCAAGGCATCGCAGAATACACTTGATAGACGAGCATGATGACGCTCCTCAAGTCCCACCTCTCAAAAGACCACATTCCTTGCCTATGAACATTCCTGAAATCAGTAGCCACGGAACTTCCGTTAGTATACCCACTCTTCCCTTGGTAGGAACATCCAAAAAGTATGTACCACTAATGAACACTGTGACAAAGCCTAGTAGTAaatcaatttcatttcaaacaGGCGCCCTTTCAAAGCTCAGTAGCATTCCAGGATTGTCTCCCAGAGTTAAAGAAACAGTTCCAAAACCTGAATTAATGATGTTTTGTGACATCTGTCCTCAGATGGCATTTCAATCTACGGCGCAGTTGGCAGATCATCGTCGCAGAATTCACTCCCTTCATCCGTGTGACCTGTGTTCAAAATTCTATGGTAGGACATCTGATCTCTGGAAGCATGTCAAGAGAGTTCATAACAATCACCCAGAATTGACGTGTTCAGTCTGTAAACGAATTTCAGCAAGCAAAGCTCATCTAGAAAGTCACATCTCTACAAAACATTATCCCAAGAACCCAAACCCTACCATCAAACTACCTTCTTCTAGACTGTGTTTCACGGCtgggaaaattatgaaaatcccGACACTTTATCCATGTCAGAAATGCTCAAAACGATTCTGGAAAAGCCACCTGCTCAAAAAACACCAGCGGCATTGCTTGCGTGCAACTAAACCTAAACCActgaaactttcaaaattaaattctgattcCTCCGCTTCCACACAGGATCTAACCTGTGATATATGCTCCAAGGTTTTCCAGACCCCATCACGATTGAAGGAACACCAGAAAGTAGCTCATGTTCCACAGTACTGTGAACTGTGTCCTGATACCTCCTTCATATCTAAAGCAGATCTCTTTGCTCACATCAAAGAAACTCATGACAGTCACCCCAACTTCTTCTGCCCTATTTCAAGCTGTTCAAGAATAATGAGGTCAAAGTTTGATCTTGATGTGCATAATCTACaacataattctgttaaatatcCTCCAACATGCTACCTCTGTGGAGAAGTTTGTTCAGACAAAGTCAGATTATGGAATCATCTTAACTCAGCACAGCACAAGGCTGCCATACCTCTTATATGTGGTGTTTGTTTCAAACACTTTCCATCAACTGAAGAACTCATTTGTCACGTAGAAAGCTTCCATCCAACAGCCTTGAAAGCGCCAGACACCTGTAAGATATGTGCCAAGAGTTACTCCAGTGTGTATAAAGTTATGAATCATTTTACGAAATGTCACCCAAAATATTATGCTTGTAGGGACTGTCTCCAGGTATTCAGAAGCAAGCCAGAATTACAGGAGCACAGTGAAAAGGGACATGTGAATACTCTTGAAGAAGATGGAAAGGGTGTAACCTGTGATGCCGATGGCGAAGAGGGCGGAGAAAGAAACGAAGGGATAaaaatatctggtgaagaggaaggaggaagaaaggaagagacaGAAGTGTTAGGAAATGAGGACATTACAAATCGTTTAGAGGAGGGAGATGGGATTAAGAACGATGAGTTGCCAAGTGAGGTTCGCATGGAAACGTTTCCAGCATCTGCTGAATCGATGAAACGCAGTGAAGCAAAACATCAGAATGATGTGGaaaatttcaattcaaattcAGGCCCTGAAGAAGAGTCGTCAGACATTCAAGAGTATGATGTAGAATTCAGCAAAGATGCTAAGAGACCGAGGCGTTCGTATAATTGCGAAAAATGCACCGTGACTTTCTGTTCGCCGTCAGATCTCGCGGAGCACAAAAAGACGAAGCACGCTTCGTCGGCATTAGACGTGAAACCTTATCACTGTGACCAGTGTTGCAAACATTTTACTAATAAATCATCTTACTGGAAGCACATTAACTCTCCTGCTCACCAGGCTAAACGAATGCAACAGAAATTCATCGCAGGAACAGTGTTATCACAAAAGAATCTCGTGACTGGAAGTCACCAGTTGCATGCTTTGAATTTCCTTGGAAGTTCAGGAGATGCTTCCAGTGCAAAACCACAAAGCCAGACAGAGTTTGATTCTGAATTACCTTTTGTTTATATACCGGAATCCTCTCTGCAAAGTAATCTTATAAAAGAAGAGCCCGAACATAATTACGTTTCTAGCGCCAGTACTCCTGGGAAGGAAAGTGATAACAAAGATAAGAAGCAAGATAATGAAGGAGGCGATTTGTCATCAAAATCTGAGAATGAGTATAACAGCAAGCACACAGTTTCATGTGGTCAGACCAGCGATACATCTTGCAGTGTAAAATTGAATCGTCGAAGATCAGAAGTCCGTAAAGTTTACAGCAATGGCTCTGATTCTAAGTCTCCTTGTTACTGTCAGCTCTGTGGAAAGGAGTGGCCAGCCCTTAAACACCTTTGGCAACATCTCATTCGTAACCATCAACAGGAGGCTGCAGTAACTTGCGGTGTGTGCCTCAATGTCTGTTCTGACTATCACAGCCTTGCATCTCATCTGAGTTCACAGCACCCTGACAATTTTTGTGGCGACGGAAACAATTTCACGTGCCGCATATGTGGGCGTTATCACAATGCCCGATCTAAACTCATCCAGCATGCGACTATACATATTGTCCTGGGTACAGAACCAGAGAATCAGCCACAATCAAATCTTCACAATTGTCAAACGTGTTTTAGATCTTTCACCAATGAACAAAACCTCCGTGATCATCAGAAAACACATAAATCTATCGATGTTCCTAATTCACAGCCGCAGGGTGAGAAGTTAGAACTTAAGTGTGATATGTGTCACAAAGTTTGTGGTAATGTAGGTGCCCTCGTGACACACCGCAAGAGTCACAGAATGAATGCAGGCGAACTCTTCACCAGAAATGAAGAATTGTTTGAAatggaaacagaagaaatgGAACACAATGTAACCACTAATCTAGACTTTAAGAGTGAACAATTCTATAGCTGTGACATCTGCCTTAAGGTTTTCAAAAATGAATCGCTTTTCTGTGAACATAAACAAACCCACGATGTACCTCCCAAAAGCAAGAATATGTTGTCGCATGACATGAGGTTACCAGTACCAAAGGttgaaaagcaaaatttataTGTCTGTGACATTTGTGCTCTAGCTTTTGTGACAGAGAAGAGTTTAATTGCCCATTCTGCAAGCCATAAATCTGTGCCTGCGTCTTCAGTTTCAAATGCGCGACGTTCATCTGCCAGTGACAGCGAAGACTGCGCGGGTTTCAGTACCGGCGAATCTCGCGTTCATCTGCCAGTGACAGCGAAGACTGTGCGGGTTTCAGTACCGGTGAATCTCGTGGAATGA
- Protein Sequence
- MSCRPDNYMELCRLCACYDAIKMEIFGEEGRERNLVDKIQTCLPFQVSESDKLPKSLCYRCMYNLENFYDFRKRSVNAVALLESCVGQSEENSEMGAELKERFERLCSQLRQIKDEGETCEKDMPMPRLELQFPVPAVSPEKGQNTESERMYKGATSPTSEQSDFHPPSDGEDEVGVECDEDTDQDPSADIEVADNTNGRRKGALHSDRYCVGAGDHELPEHETLHTCSICNKAFSSKGHLALHNKIHMKETVEETHSKRPRRQTSSPAENLMDLNWKSGYYRPYRCDLCNKSYSTAKHRWGHVSVCHRGNPLVTCPICARVFSTCYNLGEHKRTKHGLEEGEIVDVNYSDAAVVNSTDSLKQSSKRSSPTTEDNFQKSAGNLKSTQNVTRKTSVSNSGILHTCMQCLKVFKTEGELERHSVCHISRGSSENANQNPNPEAGKKSEIGKKSEFTKGSETVRKVDLKAIPGINNETSLLKQTLLQNRESAEIRSRKRSPSLDAGTDDVKVKKRVGSSAEMRSNSGSRRKSSKPRKIARNEEDNEDFDQDGRDLNTYACDNCSQIFHTLSELQGHRSTHDIEEHTEAENVSNTKPFTCLLCEKDFSLRTSLSRHFNACHGIDPSEVMDISKYQRIPQKKQDTSTLAITESGQSTSRKFDGQQKLGFQRSSSRSSVDKEVAELDEDDDTLLPEKPSESQSSFMCEVCTREFGDRASLWLHLRYTHKECAAYACGICLQICENNTQLYQHWRTSHPPDQNSTDQRRYCCQMCGRQHDYRKKLLAHVSVHNLDNGAGGVYDPEMLVTLNTGFYKFENHDENSVLNEYRPSSEQEILLEYSGGKYTNVKLTKETSSFGCELCYKSFPTEDGLVKHKKGAHKVNCNLDAGTLSSIRGSYQLYFVCELCGSSYSSKSDRWRHVFRSHRGESALTCDKQGCGKVFPTRTLKQEHCTNHHQLQGATPNVCEICGKLWGTRVDFWKHLMGVHSDCVPLTCGVCLKIFCTVPDLQAHVHSNHLPLTAGDFCCDICGRPYSNRSKLSRHRRIHLIDEHDDAPQVPPLKRPHSLPMNIPEISSHGTSVSIPTLPLVGTSKKYVPLMNTVTKPSSKSISFQTGALSKLSSIPGLSPRVKETVPKPELMMFCDICPQMAFQSTAQLADHRRRIHSLHPCDLCSKFYGRTSDLWKHVKRVHNNHPELTCSVCKRISASKAHLESHISTKHYPKNPNPTIKLPSSRLCFTAGKIMKIPTLYPCQKCSKRFWKSHLLKKHQRHCLRATKPKPLKLSKLNSDSSASTQDLTCDICSKVFQTPSRLKEHQKVAHVPQYCELCPDTSFISKADLFAHIKETHDSHPNFFCPISSCSRIMRSKFDLDVHNLQHNSVKYPPTCYLCGEVCSDKVRLWNHLNSAQHKAAIPLICGVCFKHFPSTEELICHVESFHPTALKAPDTCKICAKSYSSVYKVMNHFTKCHPKYYACRDCLQVFRSKPELQEHSEKGHVNTLEEDGKGVTCDADGEEGGERNEGIKISGEEEGGRKEETEVLGNEDITNRLEEGDGIKNDELPSEVRMETFPASAESMKRSEAKHQNDVENFNSNSGPEEESSDIQEYDVEFSKDAKRPRRSYNCEKCTVTFCSPSDLAEHKKTKHASSALDVKPYHCDQCCKHFTNKSSYWKHINSPAHQAKRMQQKFIAGTVLSQKNLVTGSHQLHALNFLGSSGDASSAKPQSQTEFDSELPFVYIPESSLQSNLIKEEPEHNYVSSASTPGKESDNKDKKQDNEGGDLSSKSENEYNSKHTVSCGQTSDTSCSVKLNRRRSEVRKVYSNGSDSKSPCYCQLCGKEWPALKHLWQHLIRNHQQEAAVTCGVCLNVCSDYHSLASHLSSQHPDNFCGDGNNFTCRICGRYHNARSKLIQHATIHIVLGTEPENQPQSNLHNCQTCFRSFTNEQNLRDHQKTHKSIDVPNSQPQGEKLELKCDMCHKVCGNVGALVTHRKSHRMNAGELFTRNEELFEMETEEMEHNVTTNLDFKSEQFYSCDICLKVFKNESLFCEHKQTHDVPPKSKNMLSHDMRLPVPKVEKQNLYVCDICALAFVTEKSLIAHSASHKSVPASSVSNARRSSASDSEDCAGFSTGESRVHLPVTAKTVRVSVPVNLVE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -