Basic Information

Insect: Zootermopsis nevadensis
Gene Symbol: -
Assembly: GCA_000696155.1
Location: NW:1107811-1134329[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.0094 0.34 10.9 1.1 1 23 296 318 296 318 0.97

2 14 0.075 2.7 8.0 0.1 3 23 326 349 324 349 0.84

3 14 0.0019 0.066 13.1 0.9 1 23 355 378 355 378 0.96

4 14 0.00012 0.0044 16.8 4.2 1 23 384 406 384 406 0.96

5 14 1.6e-05 0.00058 19.6 4.6 2 23 413 434 412 434 0.96

6 14 0.00012 0.0045 16.8 1.8 1 23 440 462 440 462 0.97

7 14 0.012 0.43 10.5 1.1 3 23 470 491 469 491 0.96

8 14 0.00013 0.0045 16.8 1.3 1 23 521 543 521 543 0.97

9 14 5.1e-07 1.8e-05 24.3 0.5 1 23 828 850 828 850 0.97

10 14 5.1e-05 0.0018 18.0 2.4 1 23 857 879 857 879 0.98

11 14 0.01 0.37 10.7 0.1 1 23 887 910 887 910 0.98

12 14 1.8e-06 6.4e-05 22.6 2.1 1 23 916 938 916 938 0.96

13 14 5e-05 0.0018 18.0 2.7 1 23 944 966 944 966 0.98

14 14 1.7e-06 6.1e-05 22.6 3.3 1 23 972 994 972 994 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.0094	0.34	10.9	1.1	1	23	296	318	296	318	0.97
2	14	0.075	2.7	8.0	0.1	3	23	326	349	324	349	0.84
3	14	0.0019	0.066	13.1	0.9	1	23	355	378	355	378	0.96
4	14	0.00012	0.0044	16.8	4.2	1	23	384	406	384	406	0.96
5	14	1.6e-05	0.00058	19.6	4.6	2	23	413	434	412	434	0.96
6	14	0.00012	0.0045	16.8	1.8	1	23	440	462	440	462	0.97
7	14	0.012	0.43	10.5	1.1	3	23	470	491	469	491	0.96
8	14	0.00013	0.0045	16.8	1.3	1	23	521	543	521	543	0.97
9	14	5.1e-07	1.8e-05	24.3	0.5	1	23	828	850	828	850	0.97
10	14	5.1e-05	0.0018	18.0	2.4	1	23	857	879	857	879	0.98
11	14	0.01	0.37	10.7	0.1	1	23	887	910	887	910	0.98
12	14	1.8e-06	6.4e-05	22.6	2.1	1	23	916	938	916	938	0.96
13	14	5e-05	0.0018	18.0	2.7	1	23	944	966	944	966	0.98
14	14	1.7e-06	6.1e-05	22.6	3.3	1	23	972	994	972	994	0.98

Sequence Information

Coding Sequence: ATGGAAGAAGTGGATAAGGACTTAGCTCTGACATCATTGGGGTCAGAAGGAAGaagagaaataaaagaaatcacCTCTGCAGCAACTACCTGCACAACCACTTCAGGGGGAGGCATAGATAGGTTGATGGTTATCAACGTGCAGCAGGAGCAACAAGAAGTACCTGTTACATTACTAACAACTGCAGGAAGCAGCATTAATTCTTCAGAACAGCAGCTTATTACACTAGTACCACAAAATTTAAATGATGGAGTGAGTGACCCTCTCGCGATTCCAGAGCAGCCGCAGACACTTACTGAAGAAGATATGGTATCAAGTTTGCTAGGTTCTGTGGTGGTCAACTCTACTGGTGATGACCCTTTACTTTCACAGCAACGGACAGGAGCTTTACATACAGAAGATGGACAAATCCTGTATGTTACATACACAGTAAATCCTTTATTGGATGAAGTCAGTGCTCCTCTACATTCATCTGCAAGTGAAACTTCTCAGCGCATGGTGTTACATGTAACAGATAGTGGGAGTACTCTTGTGCTGCCAGCTGAGAATGTGGAAGTGGGAGGATTTGACATTGAAAGTGGGCTTGTGCCTCAGATAACTGTTAATGGAGTGTACTCACTTGTAACAAATGACAGTTTATCTGAAGAATCTTTAACTTCTCCTCTAGTCCAGACCTGTGGGATAAAAGATACATTTAAAGAGGATGAGAAGCTGAAGCAAAACCCATTTGTTGAGATTAAAAATCGCAGACGCACTGAACAGGTGATTGGTAATGAGCTGCATATAGAACAGAAGCTGGAAGTGTTGGATGCAATGCTAACCCCTGCACCAGAGCGACCTCGTAAGAAGAAATCAGACCCTGTCACAGAGGATGGAGAGGGCCATTATATATGTGACCTGTGTGAGACTACATTTCCACGGGCCAACCAATTTTATGGTCACTTGCACTCACACAGTGGCGAGAGAAAATGGgagtgtgctacatgccctggcAATGTGGTGTTTCCAAGTCAGTCACAGCTGCGTCGTCACGAAAAAGAATCCCATCTGAATTTACGGCCGCATGCATGTGGGATATGTTCTGCACGTTTTGATCGGGTCTCACAGCTTAGTTATCATCAGCGTCGCATTCATGCTGGAGAGCGGGGACATGCTTGCCAAATTTGCCATAAGGCATTCTTCAAGCGATCTGATCTAAAGACACACCTGAACATTCACTTGGGAATCAACAAATGTATCTGCGAGACTTGTGGGAAAAAATTTAATCATGTATCCAATCTGATTCGACACACAAGGATGCACTCAGGAATAAAGCCTTATCCTTGCACAGTATGTGGTCGACGGTTCAGTCAACTTAATGCTCTCCATCAACACAAAACATCACATCAGACAAATAAGGATGTTGCCTGCACCATCTGTCGTAAGATGTTCAAATCATACATGGTGATGCGTAAACATGTGCGCCAGTTGCACAGAGACAAATTAGCTGCATCAGGGAAGGATGCCAATTCTtgtTTTCGCCAGGTACTGAAGATAAAGGATGGTGCACAAAGTAGAAGGTTCTACTGCAAAGTATGTGGGGAGAACTTTGAGTTTTCATCATTGCTTAAACAGCATGAGAAACAGCATGAGAAAGAAAACAGTTTCCACTGTAATTGTTGTGGGCAGGATTATGACACAGTGGAGTTGCTGAAGGGTCACTCTTGTCAGACTCCTGAGGAGAGGTTACAAAAAGAAGCAGAGGATGAAGCAGAGGCAGAGAGAGTTGCCCTAAACACCCAGCTGGAGTCTCTGCTTCAGGAACACCATAGAGATGAAGAAAAGAATACTGCGCATGGAAACAGTGGGATTATGGCTGAGATTATAATCTATGTAACACATGAAGGACAAGATGAACCCACCCAGGTCCATATCCAGCCCGTTACTGCACCAATCTTAGGCCATACAGATCAACAAAAATCTTTGGTAGTGGTACCTAGCACAGATGTAGGAGTCCAGAAGACTGAAGCTGACAGTCAGCATGAACAAAGTCATCAAGATGTAGTAATAGTGGGTGACTGTGGAAGCTCCTGTCAAATGGCAACACATCTTGATGGAACACTAGCAGACCCATTACAGTTAAAAGTTTGTAGCACAGGGATAACTGTTGGCAGCAGTGAAGGGAACAAGAGTGACAGGACAGACTGTAGTAACTCATCTCCTCTGTTCCCTCGCAACATGGCCACAGCCCTGGAAAGTGACAGCAGCAATGATAACTTTATTACAGGTGATGTTCTGGGAGAACCTAGTCAAGATTCAGACTGTGATAATGGCATGCCAAGTGTAAGAGGATCAACATATATGCAAAATGAAGGAGTAAAGAAGACAGGCGGCTATGTCAACATATTAGTTCCAAAAATTGAATCTACTGGCATATCATCAGATTCTGCACCTGTCCACAGTTCAACAGTGCCTGCCACAGGCAAGAAACAAATGCGAGTGTACCAGTGCCCTGAGTGTCCGAAAACTTTTGTTAAGAACAGCAACTTCAAACAACACTTAGGTATTCACTTCATTGACCAACAGCGTTACCATTGCTCTACTTGCGGACAGTCCTTTGCTTGGAAGTCGACACTGAACAAACACATGCTCACTCACAGTATAGGTCCTCTGCCTCGCTACAGATGTGATCTGTGCAGCAAGGAATATGCTGCTGCTACGCAGGTTCAGGAACACATTAAACGGGACCACTACAAGCAAAGGCCACATGCTTGTCTTGTTTGTGGTAAaactttttataagaaatatgatcttaaaatacatataagAACCCACACAAAAGAGCGACCATATATTTGTGGGACATGTGGGAAAAGTTTCTACCATCTTTCTCATATAATACGTCATGAGCGCATCCATTCTGGTCAGCGACCATATCACTGCCCTGACTGCGGCCGTCAGTTCAACCAGTCAAGTTCACTTAAGAGCCATAGGCAGCGTCACAACCAATGTGTCACAAAAGCTGCTCTAACTGGAACTCAGCTGGCACCTCCAGAGTTAGTACATCCTGAATATCCAGACATTGGGCCAGATACAGTTCTTCTGTATGCAGGAGCTGATTTATAA
Protein Sequence: MEEVDKDLALTSLGSEGRREIKEITSAATTCTTTSGGGIDRLMVINVQQEQQEVPVTLLTTAGSSINSSEQQLITLVPQNLNDGVSDPLAIPEQPQTLTEEDMVSSLLGSVVVNSTGDDPLLSQQRTGALHTEDGQILYVTYTVNPLLDEVSAPLHSSASETSQRMVLHVTDSGSTLVLPAENVEVGGFDIESGLVPQITVNGVYSLVTNDSLSEESLTSPLVQTCGIKDTFKEDEKLKQNPFVEIKNRRRTEQVIGNELHIEQKLEVLDAMLTPAPERPRKKKSDPVTEDGEGHYICDLCETTFPRANQFYGHLHSHSGERKWECATCPGNVVFPSQSQLRRHEKESHLNLRPHACGICSARFDRVSQLSYHQRRIHAGERGHACQICHKAFFKRSDLKTHLNIHLGINKCICETCGKKFNHVSNLIRHTRMHSGIKPYPCTVCGRRFSQLNALHQHKTSHQTNKDVACTICRKMFKSYMVMRKHVRQLHRDKLAASGKDANSCFRQVLKIKDGAQSRRFYCKVCGENFEFSSLLKQHEKQHEKENSFHCNCCGQDYDTVELLKGHSCQTPEERLQKEAEDEAEAERVALNTQLESLLQEHHRDEEKNTAHGNSGIMAEIIIYVTHEGQDEPTQVHIQPVTAPILGHTDQQKSLVVVPSTDVGVQKTEADSQHEQSHQDVVIVGDCGSSCQMATHLDGTLADPLQLKVCSTGITVGSSEGNKSDRTDCSNSSPLFPRNMATALESDSSNDNFITGDVLGEPSQDSDCDNGMPSVRGSTYMQNEGVKKTGGYVNILVPKIESTGISSDSAPVHSSTVPATGKKQMRVYQCPECPKTFVKNSNFKQHLGIHFIDQQRYHCSTCGQSFAWKSTLNKHMLTHSIGPLPRYRCDLCSKEYAAATQVQEHIKRDHYKQRPHACLVCGKTFYKKYDLKIHIRTHTKERPYICGTCGKSFYHLSHIIRHERIHSGQRPYHCPDCGRQFNQSSSLKSHRQRHNQCVTKAALTGTQLAPPELVHPEYPDIGPDTVLLYAGADL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -