Znev006971.1
Basic Information
- Insect
- Zootermopsis nevadensis
- Gene Symbol
- -
- Assembly
- GCA_000696155.1
- Location
- NW:44045-64130[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0046 0.17 11.8 0.1 2 21 502 521 501 522 0.93 2 17 0.015 0.55 10.2 1.0 2 23 719 741 718 741 0.95 3 17 0.021 0.76 9.7 4.8 1 23 745 767 745 767 0.97 4 17 0.0029 0.1 12.5 5.2 1 23 773 795 773 795 0.97 5 17 0.13 4.7 7.3 4.7 1 23 802 824 802 824 0.92 6 17 0.016 0.58 10.1 0.5 1 22 829 850 829 850 0.94 7 17 0.00015 0.0053 16.5 2.4 2 23 861 882 860 882 0.96 8 17 0.0026 0.092 12.6 1.0 1 23 888 910 888 910 0.98 9 17 0.0002 0.0072 16.1 4.1 1 23 916 938 916 938 0.96 10 17 0.015 0.52 10.3 3.0 1 23 944 966 944 966 0.98 11 17 1.2e-05 0.00044 19.9 2.7 1 23 990 1012 990 1012 0.98 12 17 4e-07 1.4e-05 24.6 1.0 1 23 1018 1040 1018 1040 0.98 13 17 0.00088 0.032 14.1 0.6 1 23 1046 1068 1046 1068 0.95 14 17 4.5e-05 0.0016 18.2 4.4 1 23 1074 1096 1074 1096 0.99 15 17 4.2e-05 0.0015 18.3 2.1 1 23 1102 1124 1102 1124 0.97 16 17 0.00027 0.0096 15.7 3.5 1 23 1130 1152 1130 1152 0.98 17 17 0.0011 0.04 13.8 2.7 1 23 1158 1180 1158 1180 0.96
Sequence Information
- Coding Sequence
- atgtcACTAGAAAAAACACGTTGTGCAGCAGTAAACTGCAAAAACACTACTTCAGTAACACATAGGTTTCCCAAAGATTATGAGAGATGCAGAATATGGGCAGAACGTGCTGGCTGCCTCAGTCTGTTAGAAAAAGGTGTAGATGTCCTTCATGCTTCATACAGACTCTGTTCAGATCATTTTCATGATGCTTCGTACACTTCCAGTAACAAAAAGAGGCTTTCAGTCCATGCTCTTCCAGAAATATTTCCTGAACCGTCTGaatgttcAGAAGCTGAAGATGAAAATTTTCGCACGTCCTTGGAATGTGGGGATGGagcaagtttaaaattatatgatttaCCAGAAGTGCACTCTAATCTTCTCTGTCGTACATGCGCGTATCCAAGCGAAGAATTGATCCCAGTGTTTGGAGACAAAGGTTTAGAACTACAACTGCTtgaaaaaatacatacacatcTACCTGTAATGGTAACTCCAGAAGATTTGTTGCCAATTTCTGTTTGCTCATCTTGCATCTGGAAGCTTGAAATGTGCCATGAATTAGTTCATACATGCTTGGAGGCAGATGCAAAGTTGAGAGCAGTTGTCGGCTTGGAGAGTAATAATGAGgGACTGTACAGTGATGAATATGGTGTAGAATCCCAGTTTGATCTTGTCCATGATGCTTCATCTGGGATCAAAGACGAACCAGACTGTGATGAAGGGGCATGTACACTGGATGACTTAGCaaatcagcagcagcagcaactcAATAGTGTTGGCTATGTTCAGCATGCGGATGAAGCACAGTCTTCCTATCAGAcatttggttttattaatttcaaacagGAAACAGTAGAAGGTGCAACTGACCATCAGTTTTACAACGCAGAAACTTATAATTTGTGCAATGCGCATGTGCCAGACAGTTCTGGTGATATTCAGCATTACGATCAAGCCAGTGAACATACATATAATATAGATGAGCAAGAATATGCAGTTGATAAACATCTTCAGTACCATAACAGTGATCATGTCAAGGATGTGATAAAAGAGAatccaaaatttaaagttattattgttaaattgaAAACTGGTACAAATATGAAAGGAGATTCTCAGACAGATGAAACAGTAAAAGTTCTGAAGATTGTACAAACATCACCTGCTGTTACTTCAGATAAGAAAGCATGTGAAGAGCAGCAACATCCACAGGAACAGGACACTGAATGTGCTGATGGCCATGTGAATGAGTTATCTTTAGAGCTTCCTGGGCTGCTATCTTCAAGCAAAAAATCTTCTAATGTAGAAGGTGTATCAAGAGTTGTTTTTAACAAGACCGAGATGTTGGGTTGTTCAAGTAATAATGTTTTGGATAAAATTCCTGATAACTCTTCAAGAGAAAGCACGGCAGATCTTGCCTGTGCCCATTTTGAGCAGAGTGTATCCTGCGAGAGGAATTTGTTCAGTGAAGATAATTTTGCATCAGATCAAACAACTGTTGTTTGTGATGAAACATTGCATTGTGCTGAGTGTGGTATTGTTTATGCATCTCAGCAATTGCTGGAAAAGCATAAAAGAATTTGTTCCAATAAATCAGGTTGTATGTCAGTTTCTGAAAACACTTTCCTGAATCACAAAGACCCTTCATTACAACCTGTTGTTTTCTTGGAAAGACTcgaattattttcagaaaatgacaACAAACTTAAAGTTGTGGAAAACACACACAATATTCATGTATGCCCAGAATTTCCAGCAAAGTCTCACACTGAATGTGCTTTGGTATTACCATTACCTGAAAATGCACAGACCGACCTAGCTTCTTTGGAAACGAGTGTcctaaataaaagtaaagggaaaaatgaaactgaaattattgaAACATTCGATAGTCATGTTACTCCAGGAAAGAATATATTAAAGCAATCATGGgctgaaaataattcagaattatgtaaaaaatttgAAACCACACATAGAAGTGATACAGCTAAgataattgaaaacattaacaatataattaaaagaaatgaagaaatctTGTCAGAAACTGCTACTGCAAAACTAGAAAAATCAGTCTTGTCAAATAAGGAGTTAATAGAGAAGGTAGTAAAACAGAAACCTAAATATGTGCCGCAAATCAAATTTGAGAAAGTCCATAAGTTTTGGAAATGCCTACAGTGCTTCATTGTTTTCAATACAGAAAGAGCATTACATGACCATATCAGATTAAAACATCCAGTGATACATAAATGCCAGTTCTGTGATAAACAGTTTGTTTCAAGGTGGAGATTCAAACAACATACGTCTGTACATACTCAAGAAAAACAGTACATGTGTGAGTTTTGTGGGAAACATTTCCGTTTAAAGCGCTCCCTTCATAGCCATTTATTGTTGCATAACACAGAAGGGAACAAGTTCAGATGTCAGCAGTGTCAGAAGAACTTTGCAACTAAAGAGAGATATACAATACATTGCATGAGCCATGACAAAGCTTCGTACCTGTGTGATGTATGTGGAAAGAGTATGAAATACTTCAACAGCCTGAGGGTGCACAGGCGGACGTGCATTGATCCTGGTCTGGCACAGCAGCTTTGTTGTACAATTTGTGGAAAAATGTATCGGGACAaGCGTGGCTTTACAGATCATTTGAGGTTACACACCAATGAACGGCCTTTTGTCTGCGCACAGTGTGGTGATTCTTTCCGTATGAAATTTCAGCTGTCATACCATATGTTGCGTCATACTAATGCTCGTCAGCACAAATGTCCGGTGTGTGGGAAAGGCTTTAATCATCGTCAGCATATGAGGGTACATGTTCTACTACATCAGCAGCCCTGCAAATATATATGCGATGTATGTGAGTGTACTTTTGTGTATATGAGAGATTTTAATACCCACCGAAGAAATCATActaaagaagaaattgaaagaGCCTCAAAGTGTAAAAGAGATAGTGAAGCTCCTGTAAAGTTAACACGTTATATATGTCAAATATGTGGAAAGCATTTATCCAATCGTTTCACATTGAAGAATCATATGATGACACATACAGAAGAGAAGCCATTTTCATGTGAAACATGTGGGAAAAGCTTTTCACTTACATCAAATCTGAAAGTTCATCAGCGCATACATAGCAGTGATAAACCATTCACATGTGATGTATGTGGGAAGAGATTTGCACTCAAGATACGGTTACAATCCCATCAGTTTGCACATACTGGTGAGAAACCCTACCAATGCCATTACTGCAGTAAGAGATACTCATTCAAACAAAATCTTATCATCCATGAGAGAATGCACACGGGTGAACGGCCTTTCAAATGTTGTGTATGCAGTAAGGGCTTTCGTTCCCAGAGTAGCCTTAAGGTACATGCCCTGGTTCATTCAGACCAACGGCCATTTCAGTGCATGCTTTGTGATAAGAGTTTCAAACGACGAGatattcttcatactcaccagcGTATACATTCAGGAGAATGTCGCTTTTTGTGCAATGTTTGTGGTCGTGGTTTTAAGCAGAACGGAGACTGTAAAAAACATGAacgaacacattttaaaagtgacAATATTCAAAACACACTATCTCTAAGATTATGTACAGTTGCTACAGAAGGGAACAATATggtagaaaaattaatatga
- Protein Sequence
- MSLEKTRCAAVNCKNTTSVTHRFPKDYERCRIWAERAGCLSLLEKGVDVLHASYRLCSDHFHDASYTSSNKKRLSVHALPEIFPEPSECSEAEDENFRTSLECGDGASLKLYDLPEVHSNLLCRTCAYPSEELIPVFGDKGLELQLLEKIHTHLPVMVTPEDLLPISVCSSCIWKLEMCHELVHTCLEADAKLRAVVGLESNNEGLYSDEYGVESQFDLVHDASSGIKDEPDCDEGACTLDDLANQQQQQLNSVGYVQHADEAQSSYQTFGFINFKQETVEGATDHQFYNAETYNLCNAHVPDSSGDIQHYDQASEHTYNIDEQEYAVDKHLQYHNSDHVKDVIKENPKFKVIIVKLKTGTNMKGDSQTDETVKVLKIVQTSPAVTSDKKACEEQQHPQEQDTECADGHVNELSLELPGLLSSSKKSSNVEGVSRVVFNKTEMLGCSSNNVLDKIPDNSSRESTADLACAHFEQSVSCERNLFSEDNFASDQTTVVCDETLHCAECGIVYASQQLLEKHKRICSNKSGCMSVSENTFLNHKDPSLQPVVFLERLELFSENDNKLKVVENTHNIHVCPEFPAKSHTECALVLPLPENAQTDLASLETSVLNKSKGKNETEIIETFDSHVTPGKNILKQSWAENNSELCKKFETTHRSDTAKIIENINNIIKRNEEILSETATAKLEKSVLSNKELIEKVVKQKPKYVPQIKFEKVHKFWKCLQCFIVFNTERALHDHIRLKHPVIHKCQFCDKQFVSRWRFKQHTSVHTQEKQYMCEFCGKHFRLKRSLHSHLLLHNTEGNKFRCQQCQKNFATKERYTIHCMSHDKASYLCDVCGKSMKYFNSLRVHRRTCIDPGLAQQLCCTICGKMYRDKRGFTDHLRLHTNERPFVCAQCGDSFRMKFQLSYHMLRHTNARQHKCPVCGKGFNHRQHMRVHVLLHQQPCKYICDVCECTFVYMRDFNTHRRNHTKEEIERASKCKRDSEAPVKLTRYICQICGKHLSNRFTLKNHMMTHTEEKPFSCETCGKSFSLTSNLKVHQRIHSSDKPFTCDVCGKRFALKIRLQSHQFAHTGEKPYQCHYCSKRYSFKQNLIIHERMHTGERPFKCCVCSKGFRSQSSLKVHALVHSDQRPFQCMLCDKSFKRRDILHTHQRIHSGECRFLCNVCGRGFKQNGDCKKHERTHFKSDNIQNTLSLRLCTVATEGNNMVEKLI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -