Znev003072.1
Basic Information
- Insect
- Zootermopsis nevadensis
- Gene Symbol
- -
- Assembly
- GCA_000696155.1
- Location
- NW:1004954-1019580[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 8.5e-05 0.003 17.3 1.6 1 23 266 288 266 288 0.94 2 12 0.015 0.52 10.3 0.4 2 19 291 308 290 313 0.90 3 12 3.8e-07 1.4e-05 24.7 1.1 2 23 342 363 341 363 0.97 4 12 0.00014 0.005 16.6 0.7 1 23 369 391 369 391 0.97 5 12 0.00014 0.005 16.6 2.6 1 23 397 419 397 419 0.99 6 12 3.9e-06 0.00014 21.5 1.6 1 23 425 447 425 447 0.98 7 12 0.0014 0.05 13.5 2.7 1 23 453 475 453 475 0.96 8 12 4.3e-07 1.5e-05 24.5 0.5 1 23 483 505 483 505 0.98 9 12 0.0021 0.074 12.9 0.2 1 23 511 533 511 533 0.96 10 12 2.4e-05 0.00087 19.0 1.1 1 23 539 561 539 561 0.98 11 12 4e-06 0.00014 21.5 0.7 1 23 567 589 567 589 0.98 12 12 3.3e-05 0.0012 18.6 2.7 1 23 595 617 595 618 0.96
Sequence Information
- Coding Sequence
- ATGACAGAAATTATGGCCAGTGGTACTGTAGCTTCACCAGACTTTGATTATTTGTGTCGCCTATGTGCTTCAAAAACAAGTGTCTTAATGGGGCTTCATATATTTGAACGTGAAGGAGATTCAAGACAGATATTTAAGAAGATTACAGCATGTTTACCTGTTCAGGTTGCTCTGACAGATAAACTTCCGAAAATGGTGTGTGAGGAGTGTGTGTACAAACTGGATTTACTCTTTGAGTTCAGGGAGAAAAGTGTCAAGACAGAGACATATCTAGAAAATGTGTTAAAGACAATTGAACAACAACTGCCTCTGATTCCACCTCCACCTGCTGTTGAAGATGCTTCAGATTGTGCAGTAACTGAGTCGGCCCCTGCAGAAGTCGAACAGATAAAGTCTAATGACAACGTAAAGTGTGAACCTGAAGTTTTGATCAAAGTGGAAGATGTCAGTAATATTGTTGTCAGTATGCCGGAGGGAGAAGAGAGTGACACGGACACAGAGACAGATTCAGAGAGTGAATCCGAGAGTGACAGTGATGATAACACAGgtgcagaagacagtcacaaTGGGAGCTTGTCAGCGCTAGCTGAACCTCATGGGCACCTGGAAAATGAAAGCACGGTGGTGGTTCTTGGTTCTGGTGGGACAGAAGCATCTACAAGCCACTTTGAAAAGATAGAGAATGAAGATGGTGCTGGGATTGAAGCCGGTGTAAATTTCATGAATCCAGCTGCAAACGGACTCCTCATGCTATCGTGCTCGCAGGCCTCCGAATATCCTGACCAGGCATCATGGTTTTTTTGCCATATTTGTGGCAAGGCGTTCGCCAAGAGGGAAGAATTCCAACTACACTATGAAGATCACTGCAACAAGTGTAAGGTGTGTGGAGCATTGTTCACCAATGAGGAAGCTTTAAAAGTTCACTGTAAGGAAATGCACTTGCGCAAGCATAAGTTGTCTGACAAGCCCATCATACTTGAAGAAAAGAAGGGGGTAATGCGGAGAAAGAAGTGGGAACCCAAAGTGTGCCCTGAGTGTGGGAAGCAGTATCGAACTAATTACAAGTTAACAGAGCATATGCGGAAACACACAGGGGAGAAACCTTTCAAATGTTCAACGTGTACAAAGGCATTCAGATCTAAAATCGGGTTGGCACAGCATGAGGCCAAGCATACAGGTCAATATGAATATACTTGTAACACTTGTGGAAAAGGTTTTCAGTGCAAATCCTATCTCATTGTTCACCAGCGTGTTCACAGTGATCTGAAACCATACCCATGCACAACATGTGGGCGTAACTTCAAGACTAAACAGTCTCTGCTGGATCATCAGAACCGACATCTAGGGGTGAAGCCATACCTGTGCGAGACCTGTGGACGGCGTTTTATTACAAAGGGTTTGTGTAAGTCACACCAGCGAGTTCACTCAGGGACAGACAATAAACAGTTCCCCTGCACAGTATGCAACAAGATGTTTGTAAGCAAGTCATATCTGGCCACACACCTGCGTATTCACACCGGGGAGAAGCCCTTCATGTGTGAGGTGTGTGGCAAGGGCTTCCTGACACGTGTTGACTTGCGTATCCACTCCACCATGCATACTGGAGAGAAaagttttgtgtgtgaatggtgtGGTAAAGCATTTGCCAGACGTGATGCCTTGCGCTGCCACAGGCGCAGTCATACTGGTGAACGTCCATATCGTTGTGAGATCTGTGGACAGAGCTTTACTCAATTCTCACCACTTACTATACATAAGAGACTGCATACTGGTGAGCGTCCCTACTCTTGTGACATCTGTGAGAAAGCCTTCGTGTCTCGCTCAACGATGATGTCACACAGAAAGAAACACCATACCTGA
- Protein Sequence
- MTEIMASGTVASPDFDYLCRLCASKTSVLMGLHIFEREGDSRQIFKKITACLPVQVALTDKLPKMVCEECVYKLDLLFEFREKSVKTETYLENVLKTIEQQLPLIPPPPAVEDASDCAVTESAPAEVEQIKSNDNVKCEPEVLIKVEDVSNIVVSMPEGEESDTDTETDSESESESDSDDNTGAEDSHNGSLSALAEPHGHLENESTVVVLGSGGTEASTSHFEKIENEDGAGIEAGVNFMNPAANGLLMLSCSQASEYPDQASWFFCHICGKAFAKREEFQLHYEDHCNKCKVCGALFTNEEALKVHCKEMHLRKHKLSDKPIILEEKKGVMRRKKWEPKVCPECGKQYRTNYKLTEHMRKHTGEKPFKCSTCTKAFRSKIGLAQHEAKHTGQYEYTCNTCGKGFQCKSYLIVHQRVHSDLKPYPCTTCGRNFKTKQSLLDHQNRHLGVKPYLCETCGRRFITKGLCKSHQRVHSGTDNKQFPCTVCNKMFVSKSYLATHLRIHTGEKPFMCEVCGKGFLTRVDLRIHSTMHTGEKSFVCEWCGKAFARRDALRCHRRSHTGERPYRCEICGQSFTQFSPLTIHKRLHTGERPYSCDICEKAFVSRSTMMSHRKKHHT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00396566;
- 90% Identity
- -
- 80% Identity
- -