Znev007312.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Zootermopsis nevadensis
Gene Symbol
-
Assembly
GCA_000696155.1
Location
NW:161466-165944[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 5.2e-06 0.00019 21.1 3.6 1 23 555 578 555 578 0.96
2 12 4.1e-05 0.0015 18.3 0.4 1 23 584 606 584 606 0.97
3 12 5.3e-06 0.00019 21.1 1.9 1 23 612 634 612 634 0.99
4 12 0.18 6.6 6.8 3.3 3 23 642 662 640 662 0.96
5 12 1.3e-07 4.5e-06 26.2 0.4 1 21 668 688 668 689 0.96
6 12 0.0051 0.18 11.7 2.0 1 23 696 719 696 719 0.96
7 12 0.00033 0.012 15.5 0.6 1 23 725 747 725 747 0.98
8 12 5.3e-05 0.0019 17.9 2.9 1 23 753 775 753 775 0.97
9 12 0.00022 0.0077 16.0 0.5 1 23 781 803 781 803 0.98
10 12 1.4e-05 0.00051 19.7 2.1 1 23 809 831 809 831 0.97
11 12 2.6e-05 0.00092 18.9 2.1 1 23 838 858 838 858 0.99
12 12 2.1e-06 7.6e-05 22.3 0.9 1 23 864 887 864 887 0.97

Sequence Information

Coding Sequence
ATGTGTTCTCCAATGTCTGCAGAAGCTTACAGAGCAGTAAGCAAGGAATTAGTAAGCATGCAATCTAAGAATAATAACAGTCTAGACTCTCAAGGCTGGCTCTGCAACCAAGGGATGATAGGGTATGAAAACCAACAGAATCAAAACACCCAGCAAGGCAATTACAAGTGCAATGAACAATTTCCATCATGTTCTGTTTCCCAGATAAACATGTTACTTCAAGAGCAGCCTGATCTCAAGCATTCATCTGATTCTTGTTTTGATCATTCGCAAAATCATAGttcaaataaacaaactaaTCAGTGTTCTGACAGTGGATCAGTAAAGTCTGTTTGTGTAGAACCAAATAAAGAACAAAGAGTCAAATACTGTAATCTTCAGAAAGTTCAACAAAATGGACAATCAGTTGAACATTTTCAACAGCCTCTACAGCAAAAACAGCAAGAGCAAAATTGTTATGTGGGTCACTCTTCACTGTATGGTTCATCAGTCGAGCTACATGAGGATACACTGTATTCTCAGGCATCCCTTATCCTGCACATGGGTAATGATGGTTCTCATAACACTGGTCATTTCCAGACCCActttgtttcttcaaaacatgaGAACAATATGGCAGATAACAGTAAGTCTTACACGATGTCACCAGTTCTGCAGACCTTTCAGGAGCATACCCGATGTGGCCTGGATGCTGGAATAACCTGTGAGATGATGGATAGCTGTCTTCAGACAGACATAAAAACTGTGAATGACAGTTCTGTGAATGTGTCATCCAATAACAGCTGTTGTGAACTATCGATGGAGCCAGTCAGCAGCCGGCCTGTGTTTGGTATGCAGAAGTCAGCTGTCCACTGCCTGCTAAACTGTAATGCTGCTGTCAGTGACAGAATGCAGTCATGTTTAAACACTCAGCAGTTGCAGATAGAATGCAATGAGGTGGATGGCAAGGAAAACAGCAACCAGGAGTCTTCCAGTGTCACTTGTGAAAGTGACATCATTGTAGAAGAGACTGAAGAAGAGATGACAGAGAGCGAGatttctaTAGAAGAAATGAAGGACACTGTATTCAGAGAGGATAAACCTGCCAAGTGTCTGGTATGCAGCTTATCAGCAAATGCCAACAATCAGTTCATCCACATGCGGTGTGACTCACCTGTGACATCAACATCTCATATTCCTGTAGTAACTAAATTAGCACAAGTAGTGCTAGATATACACACGCAGATTCGTAAACTCCATAATGAGTTTATATGCAGGCGATGTCTCAATTTGATTGACACAGTCGACTGTTTAGAGACAAAATTAGCTGCTGTAAAACAAGATCTAATCCAACTATTTGAAACCCGGCTAATGTCCTTAAAAGCTCTTGAAAACTGGAAAGTAAGTGATGATAATGCAGAAAGCATTGCAGAGGAATCAAAGAACAGTGGGGATGTATCTTTGTGTAAAGAAGCTCCAGAGAATACTAAAGAAAACATGCATACAGATCAGATAGCTTGTTGTACTGAAAAACCttgtgaaaatgaagaaatgaaaaataaggatggtgaaaataaaataatgtcccaagaatctgataaaaatgtattaacagAATATGGGAGTAGTGATGTGTTTAATAAACAAAGAGTATGTGAAGTAGAAGTGTCTTATGATACAAAGTATCAGTGTGATGTCTGTAATAAGTCTTTTTCAAGCAAGGAGTATTTAAACAATCACCATCAGCAGCAACATACCAAACAGTTCAGTTTCTATTGTGATCAGTGTGGTAAGGGATTCACTCTTAAGCGTGCACTGGAAAACCACCTGTTGCTGCATACTGGGGAGTTCCGTTACCAGTGTGAAGTTTGTGGGAAACTTTTCATTCAGCATTATTCTTTGAATGATCACCTGCGTAAGCACGAGGGTCAATTTCGTCTTGCTTGCCAACAGTGTGGGAAAGGTTTTATGTGCCGTAACTCCCTGCATATCCATACACGAATTCACACAGGAGAACGCCCCTTTGTGTGTCAGCACTGCGGTAAACGATTCAGTTCCAGTTCAAACCTCGTGGCTCACATCCGCCTGTGTTCCGGGGATCTACCATTCCACTGCAACCAATGCGAAAAGAAGTTTGCTCTTATGACACAACTCAGGGCTCATGTTTTGTCACGGCATGAGGGGCAGTACCGATTTAAGTGTGCAGTATGTGGCAAAGGTTTCACAAAGGATTCAGATCGAAAAATTCACGAGCGGTCCCATTCAGGAGAAAGGCCTTTTAAATGTGTTACCTGTGGTAAATGCTACAGTAGTACTGGAAATCTGAATCAGCATGCAAAGCAGCATGATGGAGAGCGGCCTTTCAAGTGTTTGATATGTGGCCAAGGTTTCTTGCGTCGCAGTACTCTTGCCAGCCACATGAATCAGCACACTGGTGCTCGTCCATTTAGTTGTGATCAGTGCGACAAAACATTTATGACAAAACGAAACTTATATGCCCACCGTAAATGGCATGCAGGTACAATCAAGCGCTACACTTGTACCATATGTGGAAAATCATTTAACCATGGCTTACAGGTCCACATGAGGACCCATTCAGGTCACAAACCTTACACGTGTTCAGAATGTGGTATGGCCTTTACTGTCAAAAGTACCTTGAACAAACATGTAAAAAGTAAGCACAGAAAAACATAG
Protein Sequence
MCSPMSAEAYRAVSKELVSMQSKNNNSLDSQGWLCNQGMIGYENQQNQNTQQGNYKCNEQFPSCSVSQINMLLQEQPDLKHSSDSCFDHSQNHSSNKQTNQCSDSGSVKSVCVEPNKEQRVKYCNLQKVQQNGQSVEHFQQPLQQKQQEQNCYVGHSSLYGSSVELHEDTLYSQASLILHMGNDGSHNTGHFQTHFVSSKHENNMADNSKSYTMSPVLQTFQEHTRCGLDAGITCEMMDSCLQTDIKTVNDSSVNVSSNNSCCELSMEPVSSRPVFGMQKSAVHCLLNCNAAVSDRMQSCLNTQQLQIECNEVDGKENSNQESSSVTCESDIIVEETEEEMTESEISIEEMKDTVFREDKPAKCLVCSLSANANNQFIHMRCDSPVTSTSHIPVVTKLAQVVLDIHTQIRKLHNEFICRRCLNLIDTVDCLETKLAAVKQDLIQLFETRLMSLKALENWKVSDDNAESIAEESKNSGDVSLCKEAPENTKENMHTDQIACCTEKPCENEEMKNKDGENKIMSQESDKNVLTEYGSSDVFNKQRVCEVEVSYDTKYQCDVCNKSFSSKEYLNNHHQQQHTKQFSFYCDQCGKGFTLKRALENHLLLHTGEFRYQCEVCGKLFIQHYSLNDHLRKHEGQFRLACQQCGKGFMCRNSLHIHTRIHTGERPFVCQHCGKRFSSSSNLVAHIRLCSGDLPFHCNQCEKKFALMTQLRAHVLSRHEGQYRFKCAVCGKGFTKDSDRKIHERSHSGERPFKCVTCGKCYSSTGNLNQHAKQHDGERPFKCLICGQGFLRRSTLASHMNQHTGARPFSCDQCDKTFMTKRNLYAHRKWHAGTIKRYTCTICGKSFNHGLQVHMRTHSGHKPYTCSECGMAFTVKSTLNKHVKSKHRKT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-