Basic Information

Insect: Zootermopsis nevadensis
Gene Symbol: -
Assembly: GCA_000696155.1
Location: NW:145702-156432[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.46 16 5.6 0.1 8 21 170 183 169 184 0.86

2 12 0.41 15 5.7 0.3 1 16 191 206 191 214 0.90

3 12 6.1e-06 0.00022 20.9 4.2 1 23 219 241 219 241 0.98

4 12 1.2e-06 4.5e-05 23.1 3.4 1 23 247 269 247 269 0.99

5 12 5.5e-07 2e-05 24.2 5.1 1 23 275 297 275 297 0.99

6 12 1e-05 0.00036 20.2 0.8 1 23 303 325 303 325 0.97

7 12 7.8e-06 0.00028 20.6 3.8 1 23 331 353 331 353 0.97

8 12 7.8e-08 2.8e-06 26.9 1.5 1 23 359 381 359 381 0.99

9 12 2.9e-06 0.0001 21.9 2.7 1 23 387 409 387 409 0.99

10 12 0.0025 0.091 12.6 1.3 1 23 415 437 415 437 0.92

11 12 0.00012 0.0043 16.8 3.1 1 23 443 465 443 465 0.96

12 12 9.7e-06 0.00035 20.3 5.2 1 23 471 493 471 493 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.46	16	5.6	0.1	8	21	170	183	169	184	0.86
2	12	0.41	15	5.7	0.3	1	16	191	206	191	214	0.90
3	12	6.1e-06	0.00022	20.9	4.2	1	23	219	241	219	241	0.98
4	12	1.2e-06	4.5e-05	23.1	3.4	1	23	247	269	247	269	0.99
5	12	5.5e-07	2e-05	24.2	5.1	1	23	275	297	275	297	0.99
6	12	1e-05	0.00036	20.2	0.8	1	23	303	325	303	325	0.97
7	12	7.8e-06	0.00028	20.6	3.8	1	23	331	353	331	353	0.97
8	12	7.8e-08	2.8e-06	26.9	1.5	1	23	359	381	359	381	0.99
9	12	2.9e-06	0.0001	21.9	2.7	1	23	387	409	387	409	0.99
10	12	0.0025	0.091	12.6	1.3	1	23	415	437	415	437	0.92
11	12	0.00012	0.0043	16.8	3.1	1	23	443	465	443	465	0.96
12	12	9.7e-06	0.00035	20.3	5.2	1	23	471	493	471	493	0.97

Sequence Information

Coding Sequence: ATGCAAGCCACTTACTTATGCAACCCACAAACCATCATGTGTGACGAACAAGATGTAAAATTAGAAACGATTCAGCATTCTCCTGCAACAGAAGTGCCAATAGTTATGTTGCCGAAAGTTGAAGAAATTGTTCCTTCTCTGAAGGAAACCATGAATACTGTTGAAATCAAAGTAGAGAATGATGCCTGTGGTTTGAGTGAAGAAAATTCCATTGCCATAAAAACTGACGAGGTTTGCTTACCGTCATGTGCCTTTGTGAAGACCGAACCTGAGAACTATGTGGATTCACTGGAAGTGGAACCTGATTTGTATAGGGAGATGTGGTCACCTACTAATGATGGAAATGAGAGcattaatataaaagttgaGCCTGTCACAGATATACAAGAGGAGGAATATGAGGTATCAAAATCATTTCCATTTATGAAGACTGAAAATGAGATGACTCTGAATGAGCATCAGTTCATAGATAGTGAGAATCATCCATCTGCCTCTGAAGTAATTAATGAATCATTAAGCCGACAGAGTAATCTGAAGACGCATCTGTGCATATATAAGGGGGAACATCCGTATGCATGtgttgtgtgtaataaatcactCTCCCAGAGAGGTCATATTAAGAGTAATTTACACGTACACGGTGGAGAGCATCTATATACCTGTGATGCGTGTAGTAAATCGTTCACGAGGCGCTGTAACTTGAAGAGACATCTGCAGATTCATAGTGGCGTGCGTCCGTATACATGTAACGTTTGCAATAGCAGATTCAGTCAGAGAGATCATCTGAACAGACACTTGCGAATTCATAGTGGTGAGCGTCCGTATACTTGCGACGTGTGTAAAAAATCATTCCGTGACCAGAGCAAGCTGAAGAAACATCTGCACACTCATAATAAGGAGCACTTATACGCGTGTGTCGTGTGTAATAAATCGTTCAGCGAGCAGAACGCACTGAAGATACATCATCGCATTCATAGTGGGGAGCTTCCGTATTCTTgtaatatttgcaataaatcattTAGTCACCCAAATACACTGAGGACACATGCGCATATTCATAGCGGGGAGGAGCAGTATACATGTAAAATTTGCAACAAATCATTTGGTCAGAGAAGTTATCTCAAAGTACATCTACGCATTCATAATGGTGAACGTCCATTTAAATGTGAAGTGTGTAATAAATCGTTCACTgagaaacgtaaaataaattcacatatgCGCACTCATAATAGGGAGCGTTTGTATGCGTGCATTGTGTGTAAGAAATCATTTAATGAGCAGAACGCGTTgaagatacatcaacacagtcATAGTGAGGAGCTTCCGTATGtctgtattatttgttttaaatcatttAGTCGCCAAAATACACTGAAGAGACATCTGCATATTCATAGTGGTGAGCGTCCTCATACATGTCACGTGTGTAGTAAATCATTCATTGATCGGAGTAAATTGAAAAGACATCTGACCATACATAGTAGGTAA
Protein Sequence: MQATYLCNPQTIMCDEQDVKLETIQHSPATEVPIVMLPKVEEIVPSLKETMNTVEIKVENDACGLSEENSIAIKTDEVCLPSCAFVKTEPENYVDSLEVEPDLYREMWSPTNDGNESINIKVEPVTDIQEEEYEVSKSFPFMKTENEMTLNEHQFIDSENHPSASEVINESLSRQSNLKTHLCIYKGEHPYACVVCNKSLSQRGHIKSNLHVHGGEHLYTCDACSKSFTRRCNLKRHLQIHSGVRPYTCNVCNSRFSQRDHLNRHLRIHSGERPYTCDVCKKSFRDQSKLKKHLHTHNKEHLYACVVCNKSFSEQNALKIHHRIHSGELPYSCNICNKSFSHPNTLRTHAHIHSGEEQYTCKICNKSFGQRSYLKVHLRIHNGERPFKCEVCNKSFTEKRKINSHMRTHNRERLYACIVCKKSFNEQNALKIHQHSHSEELPYVCIICFKSFSRQNTLKRHLHIHSGERPHTCHVCSKSFIDRSKLKRHLTIHSR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -