Znev011430.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Zootermopsis nevadensis
Gene Symbol
-
Assembly
GCA_000696155.1
Location
NW:419868-451915[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 0.0034 0.12 12.2 1.9 1 23 211 233 211 233 0.96
2 13 1.2e-05 0.00043 20.0 2.8 1 23 238 262 238 262 0.94
3 13 0.00019 0.0067 16.2 0.5 1 23 286 309 286 309 0.95
4 13 2.6e-05 0.00095 18.9 0.8 1 23 315 337 315 337 0.97
5 13 0.056 2 8.4 0.1 1 23 346 369 346 369 0.88
6 13 7.6e-07 2.7e-05 23.8 2.8 1 23 375 397 375 397 0.98
7 13 4.1e-05 0.0015 18.3 0.5 1 23 403 425 403 425 0.93
8 13 0.00014 0.0049 16.6 2.3 1 23 431 453 431 453 0.97
9 13 8.6e-08 3.1e-06 26.7 2.1 1 23 459 481 459 481 0.99
10 13 1.9e-05 0.00068 19.4 5.8 1 23 487 509 487 509 0.97
11 13 0.7 25 5.0 6.3 2 23 516 537 515 537 0.96
12 13 0.00014 0.0051 16.6 2.0 1 23 543 565 543 565 0.98
13 13 3.8e-07 1.4e-05 24.7 2.3 1 23 571 593 571 593 0.98

Sequence Information

Coding Sequence
ATGTGGAAATATCAGCTAGAACAGCAGAGAAAGGTGGAAAGAGAGCGTCTTCGGGCTGAGAAAGAAGGTGTTGAATCTCTTCTGATTGCACCTGCTCAGGATATGACTACCTCAGAAACAGAAGCTGATGGAGAAAATCGGATTGTGATTCAGATTCTGTCTGATGGTACATTNNNNNNNNNNGAGATggcactgaagatggaaggtTTGGAGAGACCACGTCGTAAACGTGGACGTCCTCCGAAAAGACTGGTAGAGTctacagaagaaaaagaagtagAAAAGGAATTGGAATCACCAGATGTTTCTCAAGACCCTGAAGAAATGGAAGAAGATGCTGATGGAAGGAGACGAAGGAAAAGGAAAGTGCCGCAGAGGTTCAGAGAAGCTGTGCAAGGGAAGGAGTTAGAAAGAATATTCAGAGAAGAAGGTGTAATTGATGAAGATGAACCTGAAGAGGAAGATGAGGATGAAATAGAAGAGAAAGCAATTAGTGGAGATCATGATGGAAATGATGCAGAGATTATTGGTCACTTGGAAACGCAGGAAGGACAGGACCTTGGAGAACTTGTAATTGTTAATCGAGGCAGAGGAAGAGGCAGACCTCGAGGCAAGAGAAGGAAGATTCGTTTTCAGTGTGAAATATGTGGTCGGGGTTTCCAGCATAAGGGGAGATATATTGTACATAAgaGTTATCATAAAGGAGttaaatttcagtgtaataCATGCAACAAGAGATTTTCTAACAAAGACAATTTTGATCTACATCAAAAGACAACAGGACATACTGGGGAGGGTATTATCGAGGGTTTGGAAGATGGAGAGAATGCTGAAGAATTGGCATCTGGTAATCGCTATCCTTGTGACCAATGTGAGAAGACGTTCCAGACAAAGCAGAGTTATGAGgttCATTTAAAAGCAATCCATGAAGGTCAACGACCTTTTGCATGTGATGTGTGTGGAAGGAGTTTTGCCTACCATAACAGCCTAAAGGGGCACATGTTATCCCATGAGGAGCAAAAGGCTGAGAAAGGTTATCCTTGTGACATATGTGGGAAGTTGTTGAATCATCCCAGTTCTGTAGTGTATCATAAGGAAGCAGAACACAACAATGGGAGGCGGTTTGTCTGCAACAAGTGTGGGAAAGGTTTCAAACATAAACAGCTTCTGCAGAGGCACCAGTTGGTTCATTCTGATGACCGaccaTTTGTTTGTAAGTCTTGTGGTgcaagtttcaaaacaaaagcaaatCTACTGAATCATCAGCCAACTCACACTGGTGAAAAGAAGTACTTCTGTGAACTGTGTGGACAGCAGTTTGCACACAAGACAAGTCTCACTCTACATTACAGGTGGCACACTGGCCAGAAACCATATCAGTGCCACGTGTGTAACAAGAACTTCTCACAGAATGGCAACCTGCAAGAACATTTACGTATACACACAGGAGAAAAACCTTTCTGTTGTGATTACTGTGGCAGGAAGTTTACAACATCTTCCCAGTTCAAACTGCATGTGAAGAGGCACACTGGAGAGCGACCATGGAAGTGTGAGTTTTGTGGAAAGTCTTTCTTGCATAAAGATACGTGGAAATGTCACACTAGACGGCATAAAGGGGAACGCCCATTCCAGTGCCATTTCTGTGCACGAGGATTCACAGAACAATGGGCACTGAAGAAACATCTGCGGTTACATACTGGCGAGAAACCCTACTCCTGTAACATGTGTGGGAAAGCTTTTGCTGATTGCTCAAACCTTACCAAGCACAAAAAGGTCCATCGTGACAGTAAGGATGGCATTATTGGAGGAGCTGGAGGTATTTCTGTAGATCGCACAGTTTGGAATATTATCCGCTCACATCTGTCAAAAGAAGTGGAAAATGATGGAAATATAGATAATGAAGTAAGGACAGGAGAGGAAGGTGATGGTGTGCAGCAgattatttatgtaacatatCAGGATCCAGATGACCCCAGTGAAGCCAAAACTCTTCATATTGTAGATGACATGCAGGCTGATGCTGAATCAGAGACTGAACAGCCCGAGCAACAGAGTGATATGTCTATGGCTGAAGAACCTGAGTCTGTGACTTCAGTAGGAGGGATAATAACAGCTCCAGGAACAGTTGGCACAAATGGAATTGAATTGAGTCATCTCTCGCAGGCAGCAGCGGCCATGCAGCTCTCTGGTTCCCATTCACTACATGTAACAGATGAGGATGGTAACCCCATCCAGTTCACTATGCAGGATGGACGGCCGTTGCAGATTACAACAACAGATGGGCAGTCTATTCAAGTAATGACCACAGTGGATGGTCAGACAATTCCATTACAGTTAATGACTCATGGTGGTCAGCACATTACCACAGAAATGGAAAGTCAGTTGCAACATGTTGAAGTTGATAACACAGATGGCATTGTCAGTGCCATAACTacTGGAAGCCAGGAGACAGAAGAGGATGTGTCACATCTGGTGGAAGAGGAGCAGGCCATAGAATTCATGACACAAGATGGACAGAAAGTGAGATTGGTTACATCATATGAAGTTGACCCACTTAGTCTGAGCACTGACTATCTTGCCGCAACTTAG
Protein Sequence
MWKYQLEQQRKVERERLRAEKEGVESLLIAPAQDMTTSETEADGENRIVIQILSDGTXXXXEMALKMEGLERPRRKRGRPPKRLVESTEEKEVEKELESPDVSQDPEEMEEDADGRRRRKRKVPQRFREAVQGKELERIFREEGVIDEDEPEEEDEDEIEEKAISGDHDGNDAEIIGHLETQEGQDLGELVIVNRGRGRGRPRGKRRKIRFQCEICGRGFQHKGRYIVHKSYHKGVKFQCNTCNKRFSNKDNFDLHQKTTGHTGEGIIEGLEDGENAEELASGNRYPCDQCEKTFQTKQSYEVHLKAIHEGQRPFACDVCGRSFAYHNSLKGHMLSHEEQKAEKGYPCDICGKLLNHPSSVVYHKEAEHNNGRRFVCNKCGKGFKHKQLLQRHQLVHSDDRPFVCKSCGASFKTKANLLNHQPTHTGEKKYFCELCGQQFAHKTSLTLHYRWHTGQKPYQCHVCNKNFSQNGNLQEHLRIHTGEKPFCCDYCGRKFTTSSQFKLHVKRHTGERPWKCEFCGKSFLHKDTWKCHTRRHKGERPFQCHFCARGFTEQWALKKHLRLHTGEKPYSCNMCGKAFADCSNLTKHKKVHRDSKDGIIGGAGGISVDRTVWNIIRSHLSKEVENDGNIDNEVRTGEEGDGVQQIIYVTYQDPDDPSEAKTLHIVDDMQADAESETEQPEQQSDMSMAEEPESVTSVGGIITAPGTVGTNGIELSHLSQAAAAMQLSGSHSLHVTDEDGNPIQFTMQDGRPLQITTTDGQSIQVMTTVDGQTIPLQLMTHGGQHITTEMESQLQHVEVDNTDGIVSAITTGSQETEEDVSHLVEEEQAIEFMTQDGQKVRLVTSYEVDPLSLSTDYLAAT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00396548;
90% Identity
iTF_00396548;
80% Identity
-