Basic Information

Insect: Zootermopsis nevadensis
Gene Symbol: -
Assembly: GCA_000696155.1
Location: NW:12652-51509[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.18 6.3 6.9 0.9 1 23 526 548 526 548 0.85

2 18 0.0044 0.16 11.9 0.4 1 23 554 576 554 576 0.95

3 18 0.0067 0.24 11.3 1.2 2 20 593 611 592 613 0.93

4 18 0.26 9.3 6.3 2.5 1 23 620 642 620 642 0.95

5 18 0.0011 0.04 13.8 0.2 3 23 650 671 649 671 0.96

6 18 3.3e-05 0.0012 18.6 1.9 1 23 677 699 677 699 0.97

7 18 2.3e-05 0.00084 19.1 0.5 1 23 705 727 705 727 0.98

8 18 0.00037 0.013 15.3 5.4 1 23 733 755 733 756 0.96

9 18 6.8e-05 0.0024 17.6 1.6 1 23 771 793 771 793 0.97

10 18 0.0025 0.088 12.7 1.0 1 23 810 833 810 833 0.94

11 18 0.0014 0.05 13.5 0.7 1 23 839 861 839 861 0.99

12 18 0.017 0.61 10.1 0.0 1 23 886 908 886 908 0.97

13 18 0.00017 0.0061 16.3 1.6 1 23 914 936 914 936 0.98

14 18 3.7e-06 0.00013 21.6 0.5 1 23 942 964 942 964 0.96

15 18 0.00053 0.019 14.8 1.3 1 23 970 992 970 992 0.97

16 18 0.35 12 5.9 1.6 1 23 998 1020 998 1020 0.96

17 18 1.4e-06 4.9e-05 22.9 0.9 1 23 1026 1048 1026 1048 0.98

18 18 0.00014 0.0049 16.7 0.5 3 23 1056 1076 1055 1076 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.18	6.3	6.9	0.9	1	23	526	548	526	548	0.85
2	18	0.0044	0.16	11.9	0.4	1	23	554	576	554	576	0.95
3	18	0.0067	0.24	11.3	1.2	2	20	593	611	592	613	0.93
4	18	0.26	9.3	6.3	2.5	1	23	620	642	620	642	0.95
5	18	0.0011	0.04	13.8	0.2	3	23	650	671	649	671	0.96
6	18	3.3e-05	0.0012	18.6	1.9	1	23	677	699	677	699	0.97
7	18	2.3e-05	0.00084	19.1	0.5	1	23	705	727	705	727	0.98
8	18	0.00037	0.013	15.3	5.4	1	23	733	755	733	756	0.96
9	18	6.8e-05	0.0024	17.6	1.6	1	23	771	793	771	793	0.97
10	18	0.0025	0.088	12.7	1.0	1	23	810	833	810	833	0.94
11	18	0.0014	0.05	13.5	0.7	1	23	839	861	839	861	0.99
12	18	0.017	0.61	10.1	0.0	1	23	886	908	886	908	0.97
13	18	0.00017	0.0061	16.3	1.6	1	23	914	936	914	936	0.98
14	18	3.7e-06	0.00013	21.6	0.5	1	23	942	964	942	964	0.96
15	18	0.00053	0.019	14.8	1.3	1	23	970	992	970	992	0.97
16	18	0.35	12	5.9	1.6	1	23	998	1020	998	1020	0.96
17	18	1.4e-06	4.9e-05	22.9	0.9	1	23	1026	1048	1026	1048	0.98
18	18	0.00014	0.0049	16.7	0.5	3	23	1056	1076	1055	1076	0.95

Sequence Information

Coding Sequence: ATGGACAAGGCTACAAGTGTTATGAAAGTAGTTCTGAAAAACTCTTCTGGAGAATCCATTACTGTAAGCATCTATCCAGAAGACACCATTCAGGATTTGAAGAACAGAATCCAAGATGAAGTTGGAATACATTTGGATTTAAATCAGCTCAACAACAATGGGCTGAAAGTCACAGATGATCAGAAAGTGGTGGATTATATATCAAGTGGTTTGAACCCAAGCCTGGGATTTGGATTTTCCAAGAATGACATGAGTTGTGGCACACCTCCATTGAACTGCATTGTACCTGGCTGTGCCAATAATAAAATGACATGTCCTGAAAGAATGTTCTTCACTTTGCCAATTTTAAAAGATAAGCGAAGTCAGTGGCTTACTGTTTGCAAACGTGAAGATCTCCTAGAGAATATGGAGTTGAGCCTTGCAGTGTGTTCTGATCACTTCATTGAAGAGCAATTCACAACATCATCTAGTAGAAGATTAATAGAAGATGCTGTACCAACAGTGTTTCCAGTGGTACACTCTTCATGTGGCAAAAACTGCATGTTGGCTACACAAGATGTGTGTGAAGAGGAGGAAACTGTGTTTATAGataatTGTGAAACAGTCATTAAAACTGAGTCAGATATTGATAGTAATGTGGATGAATTAATGGGTGATGATGGAAGTGCTGTTTGGAAACACCCAGGACAGTTGTGTCGCCTTTGTGCCAACAATACAGGAGATGTGATCTACATCTTCAGTTCAGCTGGAAAGCAGCTCAACATAGCAGAAAAAATCAACACAAGTCTGCCAGTTTCAGTGCAGCAGACTGATCCTCTCCCAAAGCAGGTGTGCTCTTCTTGTGTTGTGAAATTAGATATGTGCTATGAATTTTCCCAGTCCTGCATTAATGCAGAGGAGAAGCTGAAGTCGTTGATGAAGCTAAAACAATTCTGGACCCAGTTCCCTGGAGAGTCAATTTCATCATCTGTATGGGGCAGgaattccattttaaaaatggagTCTAATTCAGAAGTATATGGTGAAAGCTTGAAgtttaaaaaggaaaatttaaaactgtgcaGTTCTTCTTCACATATTCAAAACAACAGGTATAAAGAATTGGATGTTAATGAacagattaaaaatgtattttgttgccCACTCTGCTGTGAAGGACAAATGATGGCATGTtgtaatgaagaagaaacttcTCCAGTGATGACtgatacaaatatgaaaagtgACAGGCTCCCATCAGATGGCAGACAGTCTTTCGATTTATTCAAAGAGCCAAACAATAGCAGTGCAAAGGAAAACAGTTCATCAGATAAAGCTGACATTAGCACTGATTGCACTAACCATTTTCAAAGTAATGTTGTTTACGAAGTGAGagatgaagaaggaaataattacacttttgtagAAAGTGGAATTGGATGGTGGAATGATGAAAGTGCTTTAGAAAGTGCAGAGATTATAATAGAAACATTGAATTCAGAGGAAGCTAAAGTTCTCTGTAACTTGGATGATGAAGATAGAGTCCCAGCTAACAGCTGGAATCTTGTAGGCCAAATGGAAACAGAAGGCAGCAGTTTCATGTGTCAGCTTTGTGGAGTGTCATTCTCATCTGAAGAACTTTGTTTGGACCACTCCAAAATTCATGCTGAGGAGGGCTGTTACCCTTGCAGTCTTTGTGGGATGTGCTTCAGCAGTGAACTAGATATTACAAGTCACCTTGAGGAACATAAGGTAGAGGAAAAGAAAGCAAGGACTAAAATTTCTAAAGGCCGTATTACATGTAGTATATGCAGCAGGAGATTTAATAATGAGAAAACACTGAATGAACATACATGTGGAACTAGTGACACCAAGCAATTTCGATGTGAGACATGTAAGAAGGCGTATATATCTGAAGAAAGACTTAGATTTCATCGCAGATTTCATGAAGGTGCCAGACCAAATTATTGTGTCCAGTGTGGGAAAGAATTTGATAATGAAGGAAGTTTATATTATCATACACGAATGGTTCATGAAGGCGTAAGACCATTTTGCTGCGAAGAATGTGGTAAACGGTTCTACTCTAATGCAAGATTAGAAGCACACAAACGTGTTCATTCTGGTGAGCGGCCTTTTGAATGTGAAGTGTGTGGGCGTCGCTTCTATGATCGAGAGACACTCAAGGGACATTACATCACACATATGTCAGTGAAACCCTTTCAGTGTGATTTGTGTGGTGTGTGTTGTGGCAGAAAGAGCATGCTGAAGCAGCATGTTCGTATCCACCATTCCAATAAATGCATGCCAAAACGTGTGCCATCCCTTATTCACTACTTCTGTAAAAtctgtaatgaaacatttacCAGCTCATCAGATGTACTGACACACAGGACCACTCACTGGGGAACAATATGTAATGGCAGCAGTGAGAATAAGGAAACCAAACCTCATATGTGTGAATATTGTGGAGAAAGTTTCTCAATGGTGAACTTACTTGGTAAGCACCGGAAACAGGAGCACCCTGATGAACAGCCCTATGTATGTAGTATCTGCAAAGAGACTTCTCGAACTCTGTATGAAGCCAGAGCACACAGGAAAACCCACACATCAATTGATGACCTAGATGGTAAGGAAAAAATTAAGCTAGACCCAGATAAAGTGGTGACACAGAAGGTGTTTATATGTGAAGAATGTGGCATGCCTTTACCTGGTCGTCGCAAGTTCATGGCACACATGAAAGCTCATCGTATGGACCTGCCTTTTGAGTGTTCAGTTTGTAGAAAAAAATTCACTGAAAAACAACGCCTTCTTGTTCATATGCGTTTGCACACAGGTGAAAAACCTTATTCATGTAGTGAGTGTGGAAAGCGATTCACTCAGTCATCAGCTCTGTACACCCATGCGCTGCTTCATACAGGTGAGAAACCCCACTCCTGTGACATCTGTGGTAAAGCATTCCGCATCAAAGCAGACCGTGACAACCATCGACGCACACATACAGGTGAGAAACCGTACCGTTGTGAGTTCTGTGCAAAACAGTTTCGCACAGGTCAAGTGTACTATCAGCATCGTATGATCCACACTGGTGAGCGACGATTTCCCTGTGATGTATGTGGCAAAGCATTTAAACGTTCACATACTCTCGTTGTTCATAAACGAATTCATACCGGTGAGAAACCCAATATTTGTGACATCTGTGGAAGGGGATTTCGCCAAAGGACAGATATGAAGAAACACAGGGCTCTGCATGCTGTCTAA
Protein Sequence: MDKATSVMKVVLKNSSGESITVSIYPEDTIQDLKNRIQDEVGIHLDLNQLNNNGLKVTDDQKVVDYISSGLNPSLGFGFSKNDMSCGTPPLNCIVPGCANNKMTCPERMFFTLPILKDKRSQWLTVCKREDLLENMELSLAVCSDHFIEEQFTTSSSRRLIEDAVPTVFPVVHSSCGKNCMLATQDVCEEEETVFIDNCETVIKTESDIDSNVDELMGDDGSAVWKHPGQLCRLCANNTGDVIYIFSSAGKQLNIAEKINTSLPVSVQQTDPLPKQVCSSCVVKLDMCYEFSQSCINAEEKLKSLMKLKQFWTQFPGESISSSVWGRNSILKMESNSEVYGESLKFKKENLKLCSSSSHIQNNRYKELDVNEQIKNVFCCPLCCEGQMMACCNEEETSPVMTDTNMKSDRLPSDGRQSFDLFKEPNNSSAKENSSSDKADISTDCTNHFQSNVVYEVRDEEGNNYTFVESGIGWWNDESALESAEIIIETLNSEEAKVLCNLDDEDRVPANSWNLVGQMETEGSSFMCQLCGVSFSSEELCLDHSKIHAEEGCYPCSLCGMCFSSELDITSHLEEHKVEEKKARTKISKGRITCSICSRRFNNEKTLNEHTCGTSDTKQFRCETCKKAYISEERLRFHRRFHEGARPNYCVQCGKEFDNEGSLYYHTRMVHEGVRPFCCEECGKRFYSNARLEAHKRVHSGERPFECEVCGRRFYDRETLKGHYITHMSVKPFQCDLCGVCCGRKSMLKQHVRIHHSNKCMPKRVPSLIHYFCKICNETFTSSSDVLTHRTTHWGTICNGSSENKETKPHMCEYCGESFSMVNLLGKHRKQEHPDEQPYVCSICKETSRTLYEARAHRKTHTSIDDLDGKEKIKLDPDKVVTQKVFICEECGMPLPGRRKFMAHMKAHRMDLPFECSVCRKKFTEKQRLLVHMRLHTGEKPYSCSECGKRFTQSSALYTHALLHTGEKPHSCDICGKAFRIKADRDNHRRTHTGEKPYRCEFCAKQFRTGQVYYQHRMIHTGERRFPCDVCGKAFKRSHTLVVHKRIHTGEKPNICDICGRGFRQRTDMKKHRALHAV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -