Znev003657.1
Basic Information
- Insect
- Zootermopsis nevadensis
- Gene Symbol
- -
- Assembly
- GCA_000696155.1
- Location
- NW:49172-72676[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.012 0.45 10.5 2.1 1 23 37 59 37 59 0.98 2 20 0.00026 0.0094 15.8 4.5 2 23 68 89 67 89 0.96 3 20 0.00022 0.008 16.0 2.9 2 23 100 121 99 121 0.94 4 20 5.9 2.1e+02 2.1 0.3 1 23 127 150 127 150 0.90 5 20 0.00039 0.014 15.2 0.7 2 23 155 176 154 176 0.97 6 20 0.00022 0.008 16.0 0.1 1 20 184 203 184 205 0.93 7 20 0.00031 0.011 15.5 0.5 1 23 213 235 213 235 0.94 8 20 0.0013 0.045 13.6 1.9 1 23 241 263 241 263 0.95 9 20 0.00031 0.011 15.5 1.2 1 23 269 291 269 291 0.93 10 20 0.026 0.92 9.5 1.4 1 23 297 319 297 319 0.98 11 20 0.0019 0.068 13.1 0.1 1 23 748 770 748 770 0.98 12 20 0.057 2.1 8.4 5.4 1 21 821 841 821 843 0.92 13 20 0.0035 0.13 12.2 4.4 2 23 852 873 851 873 0.94 14 20 0.048 1.7 8.6 3.0 1 23 879 902 879 902 0.96 15 20 2.2e-06 8e-05 22.3 2.0 2 23 907 929 906 929 0.94 16 20 1.8e-05 0.00064 19.4 0.1 1 20 937 956 937 958 0.94 17 20 0.0017 0.061 13.2 0.1 1 23 966 988 966 988 0.96 18 20 0.0013 0.047 13.6 1.7 1 23 994 1016 994 1016 0.95 19 20 0.00031 0.011 15.5 1.2 1 23 1022 1044 1022 1044 0.93 20 20 0.0086 0.31 11.0 0.7 1 23 1050 1072 1050 1072 0.98
Sequence Information
- Coding Sequence
- ATGAAGCTACACACTGCCAACATGGGTAGAGAAATGAGTGATTTGTTGGACAAAAAGTCGAAAGAAACAGGTGAAGTGCAGAAGTATGAGGCTCTTACAAAAGTTTCTTATGTTTGTGAGACTTGTGACATGGATTGTAAGTATAAATCAGTTTATATACAACATCAGAAGATTCACAAGAATAaagagaaaacatttctgtcatGTCACATATGCAGGaaagaattcaaatttaattctttgctgCTACACCATATGGAAAGCCATAAGCTCAAATCTAaagtaaaaaaatctttatCGTGCCATACCTGTGGAAAGAAGTATACCAAAAGTGGTAGCTTAACAAAACATGAGCTTCAGCATGAAGGGAAAGGAAGTTTCCGTTGTCGCCCTTGTGGAGATGTATTTGCTACTGAAGCTGAACGAACAAAACACCGTGATGAGAAACATGAAAAACCTTGGAAATGTGCAATATGCAATCATACTTTTGCCACTGAAGATAAACTTGATTCCCACATGAAATGGCATGAAAACAAGGAGACCGAagtgtttatttgtaatgtttgtgaTAAAGAATTTAAACTGAAAGTAAATCTCAAAGTTCATGTAGAAAGTCGATGTGGTACAGACCCACAGCACGTGTGTAATGTTTGTGGGAAGGCTTTTATGACACGTGGAACACTTGTTACACATTCACTGCTTCATACAGGTGAAAAAACTTTCCTCTGTCGATTCTGTGGTAAGAACTTCCGTCTAAAAGTGGAGATGCAGAGACATGAAAGGTCTCACACTGGGGAGAAACCATTTGTTTGTAAAGTGTGTAACAAAGCTTTTGCTCACAGGGAAAGTCTTGTTACACACAACACTCTTCATACAGGGATACGGCCTTATATGTGCGAAGCTTGTGGCTCCACCTTCTCATGTATCGGGAACctcataaaacacagaaaaactcaTCGTAACAGATGTGCACTTGTAACTCCTACCATGACATCCAGTAAGTGCAGGGTGAAGTCCACTACCAGGAAGTTACAAACACATGAGAAGAATGTAACAGCAAGAAAATCACCTGTCGAACACTTAATGAATTCTATGTTATTGGGAGTGCAGAGACCTAGTAATAATGGTGTAACAGAGGAGGAAGCTCCACTCTTGCCTGGTAGTtgttataattacagaaattcaaattatgaagAGAATCGTGACTGGATCTCACCCATGCTCAGTAGCAGTGATCAAACAATTGAGCGAATTCCAGCAATAAATGATAGATTCCATCCAATTGCTGATCTTCATCTTGGTAGCATGgagcaaaatattaaaagTACACATTATTACTGGGGAAGTGGCAATATTATGGGAATGCATCCTGATGCCATTCAGTCATTTGGAGTGTATAGTGCAATTTCTAAGGAGTCAAAGCCTGAGTCAGCAACTAGAAGTCTTCCATATACATGCTCTACTGATGGATTGATTGTTAATAATGGAAAACCAACAGTTGGCAGCATCTTCCAGAATTCTGACAATCATAGACTTCAAAATTATGGCGCAGAAAAGTATTCTCATGATAACAGAATTCAGATTTCAGATCGTGAAAAGTATTCATATAGTCAGAAAGAAACAACTGATCCTTTCAAACACAATAATGTGAAATCATCATATCATGTTGGTCAGAATACGATTACCATCCAGAAGGAGTCTGGATATGAATCAAACTTTGTCTGTGGTAATCGAATATGTCAGACAGCTACTTTGGTTAATGGACCGGAGAACCACAGTAGTGATGACATACCCAGTGAAAATGATGTTTATATGACTGATAACTTTACAGCAAAAAATTCAATTAGTAACCTGAAATATGAAGACACAGATAATAAACATAAAGACAATCTGCCTGGTTCTATTCTTGAATCTGAATCTCAAGAGACAGATGAACTGTCAGCTGTTGGATCACCTGTTAACATCTCTTCAGACAGTACGTTATCAGAACAAGAACAGACTGATATATTTACCTCAAAAGTACTGGTAGATTGTAATTATACTGTAAAAAAGGAAATTGAATTAGATGTGAAAGATGGTAAAGATGTTGGGAAATCCGTGTTTAAATCGGGAGTAATGAGTTCATTGAAGAAAATTCCTCATGAACGGAAGCAGAAATATCCTGCAAGATGTGATGTTAGAAGTAAAGAATCAGATACAGCTTCAGTTACTAAAAGTACAAGTGAATTTCCTGAAGATCAGTTTTCATGTGCTTCATGTGGTTTGGGTTTTGCTCAAGAACAGTTGTTAAATGAACATACTCGGTCTCATTCagataatagtaataaatacaatgagATAAACACAGATGATTCTGAGAGAACAGATCTAGCCTCAGATGAGGATGAGCCATTATATAAGCGTTTGGAACGTCATTTAAAGGAAGTGGAAATCCTTAACTCTGGAGAAGTACCGAGAAAGTTCCTTTGtcaatattgtaataaatattttgaatttgtgtcaCAATTGAATCGTCACAGAAAATGTCACTCATCTGAAGAAAAGGGAGCAACACCATGTCGTCACTGTGGTAAAAAGTATACTAATAGAGcctgtttaataaaacatgaatctCAGCACACAGGTGCAGGTGTTTTTAAGTGCAGACAGTGTGGTGATGGTTTCAATTCAAAACGAGAATACCGATCTCATCGAACAAAGCAGCATGGAAAGCAGTGGAGCTGTTCAGATTGTCAGCGGTCATTCTCAAACTCAAGTAATCTAAAGAATcattacaataacaaacatCTTGGTCGTGAGGCAAAATCTTATGCATGTAATATCTGTGGAAAATTGTTCAAACAGAAAGGAAATCTCAAAGTTCATGTAGATAGTCGATGTGGGTCAGAACCGAGGCACGTGTGTAACGTCTGTGGTAAGGCATTTATGAGTGGTGGTTCTCTTGGTACTCACATATTGCTCCACACGGGTGAAAAAACATTCCTCTGTCGATTTTGTGGCAAGAGCTACCGTCTCAAAGTGGAGATGCAGAGACATGAAAGGTCTCACACTGGGGAGAAACCATTTGTTTGTAAAGTGTGTAACAAAGCTTTTGCTCATAGGGAAAGTCTTGTTACACATAACACTCTTCATACAGGGATACGTCCTTACATGTGTGAAGCTTGTGGCGCCACCTTTTCGTGTATTGGGAATCTCATCAAACATAGGCAGACTCATAATAGAAGATGTGATATAGCAAGAGTATGA
- Protein Sequence
- MKLHTANMGREMSDLLDKKSKETGEVQKYEALTKVSYVCETCDMDCKYKSVYIQHQKIHKNKEKTFLSCHICRKEFKFNSLLLHHMESHKLKSKVKKSLSCHTCGKKYTKSGSLTKHELQHEGKGSFRCRPCGDVFATEAERTKHRDEKHEKPWKCAICNHTFATEDKLDSHMKWHENKETEVFICNVCDKEFKLKVNLKVHVESRCGTDPQHVCNVCGKAFMTRGTLVTHSLLHTGEKTFLCRFCGKNFRLKVEMQRHERSHTGEKPFVCKVCNKAFAHRESLVTHNTLHTGIRPYMCEACGSTFSCIGNLIKHRKTHRNRCALVTPTMTSSKCRVKSTTRKLQTHEKNVTARKSPVEHLMNSMLLGVQRPSNNGVTEEEAPLLPGSCYNYRNSNYEENRDWISPMLSSSDQTIERIPAINDRFHPIADLHLGSMEQNIKSTHYYWGSGNIMGMHPDAIQSFGVYSAISKESKPESATRSLPYTCSTDGLIVNNGKPTVGSIFQNSDNHRLQNYGAEKYSHDNRIQISDREKYSYSQKETTDPFKHNNVKSSYHVGQNTITIQKESGYESNFVCGNRICQTATLVNGPENHSSDDIPSENDVYMTDNFTAKNSISNLKYEDTDNKHKDNLPGSILESESQETDELSAVGSPVNISSDSTLSEQEQTDIFTSKVLVDCNYTVKKEIELDVKDGKDVGKSVFKSGVMSSLKKIPHERKQKYPARCDVRSKESDTASVTKSTSEFPEDQFSCASCGLGFAQEQLLNEHTRSHSDNSNKYNEINTDDSERTDLASDEDEPLYKRLERHLKEVEILNSGEVPRKFLCQYCNKYFEFVSQLNRHRKCHSSEEKGATPCRHCGKKYTNRACLIKHESQHTGAGVFKCRQCGDGFNSKREYRSHRTKQHGKQWSCSDCQRSFSNSSNLKNHYNNKHLGREAKSYACNICGKLFKQKGNLKVHVDSRCGSEPRHVCNVCGKAFMSGGSLGTHILLHTGEKTFLCRFCGKSYRLKVEMQRHERSHTGEKPFVCKVCNKAFAHRESLVTHNTLHTGIRPYMCEACGATFSCIGNLIKHRQTHNRRCDIARV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -