Znev002390.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Zootermopsis nevadensis
Gene Symbol
-
Assembly
GCA_000696155.1
Location
NW:646061-671584[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 14 5.7e-05 0.0021 17.8 1.0 3 23 102 122 101 122 0.97
2 14 0.0004 0.014 15.2 5.8 1 23 128 150 128 150 0.97
3 14 8.6e-06 0.00031 20.4 3.6 1 23 156 178 156 178 0.98
4 14 5.8e-05 0.0021 17.8 1.7 1 23 183 205 183 205 0.96
5 14 6.2e-07 2.2e-05 24.0 0.6 1 23 211 233 211 233 0.99
6 14 7.6e-07 2.7e-05 23.7 1.7 1 23 239 261 239 261 0.99
7 14 3.5e-06 0.00013 21.6 5.3 1 23 267 289 267 289 0.98
8 14 0.00045 0.016 15.0 2.1 1 21 295 315 295 316 0.95
9 14 0.031 1.1 9.2 1.4 5 23 415 433 414 433 0.91
10 14 0.31 11 6.1 0.3 1 13 439 451 439 455 0.86
11 14 0.00031 0.011 15.5 2.6 1 23 461 483 461 483 0.98
12 14 3.5e-06 0.00012 21.7 0.2 1 23 489 511 489 511 0.99
13 14 3.8e-06 0.00014 21.5 3.0 1 23 517 539 517 539 0.98
14 14 2.9e-05 0.0011 18.7 2.3 1 23 545 567 545 567 0.98

Sequence Information

Coding Sequence
ATGGCCACGTTCCGCAGATGTAGTTCCGATTACATTTGCAGCATGGATGCAATTAAAGCAGAGCCATATTCAGAAGATGAAACAAATCCATCTGATAGTGACATTCAGCAGGCTGATACAAAAGAAGATCTTTCTGATCCATTCTCGTTTGTTGAAGTCAAGTGTGAAATAGAGGAAGAACcacagaatgaaaataaattgggGAGTAGTGAGAAGTGTGAGCCATGTAACTACAGTGGGGACAAGCAATCCAGCACCTCCAATGGGACTGCAGTCAAGCAGACACagactggagaaaatatttgtgttctgtgcAGTAAGCAGTTCTCATCAAAGGGTAAACTAAAGAACCACATTATGACCCATACAGGAGACAAACCATTCCACTGTGCGCTGTGCAGCAAGCGATTCATTGATAGCACACATCTGAAGAGACACTTCCGGATCCACACAGGGGAAAGGCCTTTCCATTGCACCATGTGCAACAAGCAATTCACTGACAATGGCACACTAAAGACCCATTTGCGGATCCACACAGATAAGACGTTCCAGTGCCCGGTATGCAGCAAGGTGTTTTCTTCTGACTGGGACCTTAAGAAACATTGTCGAATACACACAGGGGAGAAGCCGTACCGCTGTACTGTGTGTGGGGAACAGTTCTCCCGCAATGACAAGCTTCAGGAACATGTTCGCATGCACACAGGGGAGAAACCATATACTTGTCAAGTGTGTGGGAAGGATTTTTCTCGCAATGACAAGCTACTGAAGCACTCACGAACCCACACTGGAGAAAAACCATACTGCTGCCAGGTGTGCAACAAGCAGTTTTCTCAAAAGGAGAGCCTGAACAGACATACTCGCACACACACTGGGGAGAGACCATTCCAGTGCCTGGTGTGCAAGAGGCGCTTCACACTACGGGAACACCTCAAGAGACATTCCCGCATTTGCCCAGCACAGCAAACCCCTGAGCCTTTAGACAGCCAATCTAGCATGGGAGAGAAGCACAAGATGGACATAATTAAGGCAGAGCTTGACTCAGAGGATGAAACACATCCATCAGGCATAGAACCTCAGTTTGTTGATATGAAACAAGATATGACAGAACCATACATTGTCATTGATAAGTTTGAAGCAGAGGAAGACCCATTGCAAGAAGACAAACTGAGCCATGTCAATGAAGAAGTACCAATTGTTCTCTGTGGTAACAGTATGAACGATCAACAGAAAGCAGGTGAAAATGTCTGCAGTCTGTGTGGGAAGCAGTCCTCCAAACTCAAGAAACACCTGATGACTCACACAGGAGAGAAGCCATTTCCCTGCGAAAAATGTGGCAAACGGTTGAGGAGACACGCTCGTGTACACTCAGGAGAAAGACCATTCCAATGCAGTGTGTGCAAGAAGCAGTTCACCAACAACACTATTCTGAAGAGGCATTCTCGTATCCACATTGCCGAAAAATCATATCAGTGCTCAGTGTGTGGTAAAGTATTTTCCACAGACTGGGATCTTGGGAACCATTACCGAATTCACACTGGTGAGAAACCCTATCGCTGCGATATTTGTTATAAACGGTTTTCTCGTAACGATTACcttcagaaacatttcataactCACTCTGGAGAGAAACCATTTCAATGCGATATTTGTAATAAACACTACAGTCTCAAGGACGGTTTGCAGCGTCACTCGCGAATTCACACTGGAGAGAAGTCATTCGATTGTGCGGATGACCTGCATAACAGAGTTTTTCAACAAAAGCGTCAGCTCTGCAGCAGGGTGCGTGAGTTCTCAGATAAGTATGGACTGTTGGCTATGATGAAGAACCCCAGTGGCTTTTCTGTCCAACCCAGGAGATGTGTGCAAACAAATGAAGAAACCTGCATTTATGAATCTATGGATGAAGAGCAGCTGAAATCAGTTGTGGCAGCAATGGAGGCTGAGCTCTCTGTTGCAGATGCAAAACTAGAAGAGTCTAGATTGCATCTGGCATCACTGCAGGAGGAGCACCTTCATCTTCTTCATAGTCCCACTGGTGGACACAAGCTTCAGGAGCTACATGACTTGAAGCAGCAGACGGAGTTGCTGGAGTCGCAATGTGAGGCTCTGCAGCAGGAGTTGGGCTGGCAGAATCTCATCATGAAGCAAGGAACTAACATAGACAACACTGAACAGAAAGCAGACAATATTGAGCAGGTTTTTGAAACAACAGACATTACTTGCATGGTTCCTGCAAAGGTGACAAGAACCTCAGAAAACAGTGGGGTGGAACATAAACAAGGAATTTTGCCTTTGGAACCAAGTAAATCAAACTGCAGACCATTTGTTCCTAAAATACCCAGCAAGATGTCACTGAAAATGACTTTACACAGATCCCATGACCTTGAAAAACAGCTCTGTGAACTTCTTAGCAGTGCCAAATCTTCTCCAAAACCTGGCAAGTCATGA
Protein Sequence
MATFRRCSSDYICSMDAIKAEPYSEDETNPSDSDIQQADTKEDLSDPFSFVEVKCEIEEEPQNENKLGSSEKCEPCNYSGDKQSSTSNGTAVKQTQTGENICVLCSKQFSSKGKLKNHIMTHTGDKPFHCALCSKRFIDSTHLKRHFRIHTGERPFHCTMCNKQFTDNGTLKTHLRIHTDKTFQCPVCSKVFSSDWDLKKHCRIHTGEKPYRCTVCGEQFSRNDKLQEHVRMHTGEKPYTCQVCGKDFSRNDKLLKHSRTHTGEKPYCCQVCNKQFSQKESLNRHTRTHTGERPFQCLVCKRRFTLREHLKRHSRICPAQQTPEPLDSQSSMGEKHKMDIIKAELDSEDETHPSGIEPQFVDMKQDMTEPYIVIDKFEAEEDPLQEDKLSHVNEEVPIVLCGNSMNDQQKAGENVCSLCGKQSSKLKKHLMTHTGEKPFPCEKCGKRLRRHARVHSGERPFQCSVCKKQFTNNTILKRHSRIHIAEKSYQCSVCGKVFSTDWDLGNHYRIHTGEKPYRCDICYKRFSRNDYLQKHFITHSGEKPFQCDICNKHYSLKDGLQRHSRIHTGEKSFDCADDLHNRVFQQKRQLCSRVREFSDKYGLLAMMKNPSGFSVQPRRCVQTNEETCIYESMDEEQLKSVVAAMEAELSVADAKLEESRLHLASLQEEHLHLLHSPTGGHKLQELHDLKQQTELLESQCEALQQELGWQNLIMKQGTNIDNTEQKADNIEQVFETTDITCMVPAKVTRTSENSGVEHKQGILPLEPSKSNCRPFVPKIPSKMSLKMTLHRSHDLEKQLCELLSSAKSSPKPGKS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-