Basic Information

Insect: Zootermopsis nevadensis
Gene Symbol: -
Assembly: GCA_000696155.1
Location: NW:1274393-1280928[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 2.3e-06 8.2e-05 22.2 0.1 1 23 183 205 183 205 0.97

2 11 4.2e-06 0.00015 21.4 3.6 1 23 211 233 211 233 0.98

3 11 4.4e-06 0.00016 21.3 0.3 1 23 240 262 240 262 0.98

4 11 3.6e-05 0.0013 18.5 5.9 1 23 268 290 268 290 0.99

5 11 9.5e-06 0.00034 20.3 0.3 1 23 296 318 296 318 0.95

6 11 1.2e-07 4.2e-06 26.3 1.0 1 23 324 346 324 346 0.98

7 11 2.6e-08 9.5e-07 28.3 0.6 1 23 352 374 352 374 0.96

8 11 0.00016 0.0057 16.5 4.8 1 23 380 402 380 402 0.99

9 11 9.5e-08 3.4e-06 26.6 0.6 1 23 408 430 408 430 0.99

10 11 1.3e-05 0.00046 19.9 3.7 1 23 436 458 436 458 0.98

11 11 0.082 2.9 7.9 3.0 1 20 464 483 464 485 0.87

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	2.3e-06	8.2e-05	22.2	0.1	1	23	183	205	183	205	0.97
2	11	4.2e-06	0.00015	21.4	3.6	1	23	211	233	211	233	0.98
3	11	4.4e-06	0.00016	21.3	0.3	1	23	240	262	240	262	0.98
4	11	3.6e-05	0.0013	18.5	5.9	1	23	268	290	268	290	0.99
5	11	9.5e-06	0.00034	20.3	0.3	1	23	296	318	296	318	0.95
6	11	1.2e-07	4.2e-06	26.3	1.0	1	23	324	346	324	346	0.98
7	11	2.6e-08	9.5e-07	28.3	0.6	1	23	352	374	352	374	0.96
8	11	0.00016	0.0057	16.5	4.8	1	23	380	402	380	402	0.99
9	11	9.5e-08	3.4e-06	26.6	0.6	1	23	408	430	408	430	0.99
10	11	1.3e-05	0.00046	19.9	3.7	1	23	436	458	436	458	0.98
11	11	0.082	2.9	7.9	3.0	1	20	464	483	464	485	0.87

Sequence Information

Coding Sequence: ATGCCTATGAATTTCGACCTGCTTTGTCGACTTTGTATGACTAGAGGAAAACCACTGCTTCCTCTTTTTGATAAACATAAGACTTTCCCAtcgaaaatcaaaacatttgcTCCCGATCTCAAGATGTTTGTTGGTGACAACCTGCCAACTCAAATTTGTGTGCTGTGTGCCCAGAAGGTAGATGCTTTTCATGACTTCAAGCTCCAGTGTGAAAGATCAGACGTTACATTGCGGCAGTATTTGAAGGATCAGAATTCTCCAGCTCAGCCTGTAAAGGAAAGAAATCCCAACAGAAAGTGTATTTCTGAGATACCAGTCAGCAGTAATGAAGAGGACCAGGGCTTACTGGTGGAGGTGCAAGTTGAAGAACATTCACTTATGACAGACAGTAGTGATGATGATCAGAGGTCTCCCATCAAAAGTTCTGTTACACACTCATCAAGCACTCATTGGGCAGTTCATCAAACAAACACTGAAGTAGCTGTTGATAGTACAAAAATTACAGCTTCAAAAGAACCTACTGATGAgattaagaagaaaaaaacatttgacTGTGAAGAATGTGGAGTAACCTATGTTAGAAAGGACAGTTTAGTGTTACATATGAGAGTGCATACAGGCATGAAGCCATACCACTGTAGCAAGTGTAGCAAGACGTTTACACAAAACAGTGCTCTTGTGAGACACTCTAGGGTTCATATGACAGGAGAAAAACCATTTACATGCAGTGTATGTGGAAAATATCTGGGTGATAATGCTTCCCTTACAAAACATATGAGAATACATACTGGTGAGCGGCCTTTCCAGTGCAACTTGTGTGAGAAATGTTTTGGGAATTCTAATTGCCTCAAAATACATCTCAGGACTCATACAGGGGAAAAGCCTTTTCTTTGTACGTTATGTGGGAAGGCATTTGGTGGTAACAGTTCCTTCATGGTGCATATGCGAAGTCACGGTGGTGAAAAGCCATTTCCATGTAAACTGTGTGGAAAATCATTTGTTGATCAAAGTACTCGTACACGACACATGAGAATTCACACTGGAGAGAAACCCTTTCTCTGTACTGTATGCGGTAAAAGTTTTAGTCAAAACAGTGCTCTTCTGAGTCACATGAGAATGCATACTGGTGAGAAACCATACCAGTGTACAGTATGTAATGCTAGGTTTGCTCATAAGTGTGGCCTTACGTATCACATGAGAAATCATATGGGTGAGAAACCATTTCAATGCACTGAATGTGGCAAGACATTTCGTGACAGTGGTTCTCTAGTTATACATTCTAGAACTCATAATGGGGAGCGTCCATACCAGTGCTCTTCATGTGACAAGGCCTTCATTCAAAGGTCTCATCTTGAAGCGCACAATCGACATCACACAGGTGAGAAACCTTTCAGTTGTGCACGCTGTGGTAAGTGCTACTCATCAAAGCGGAATGAAGCACAACACATTTGTGGAGTTGATCAGGAGAGAGCAATAGAAATTGGAAACCAAAATTATAACTTGCAGACTTGTTTACAACAGAGTTAA
Protein Sequence: MPMNFDLLCRLCMTRGKPLLPLFDKHKTFPSKIKTFAPDLKMFVGDNLPTQICVLCAQKVDAFHDFKLQCERSDVTLRQYLKDQNSPAQPVKERNPNRKCISEIPVSSNEEDQGLLVEVQVEEHSLMTDSSDDDQRSPIKSSVTHSSSTHWAVHQTNTEVAVDSTKITASKEPTDEIKKKKTFDCEECGVTYVRKDSLVLHMRVHTGMKPYHCSKCSKTFTQNSALVRHSRVHMTGEKPFTCSVCGKYLGDNASLTKHMRIHTGERPFQCNLCEKCFGNSNCLKIHLRTHTGEKPFLCTLCGKAFGGNSSFMVHMRSHGGEKPFPCKLCGKSFVDQSTRTRHMRIHTGEKPFLCTVCGKSFSQNSALLSHMRMHTGEKPYQCTVCNARFAHKCGLTYHMRNHMGEKPFQCTECGKTFRDSGSLVIHSRTHNGERPYQCSSCDKAFIQRSHLEAHNRHHTGEKPFSCARCGKCYSSKRNEAQHICGVDQERAIEIGNQNYNLQTCLQQS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00396532;
90% Identity: -
80% Identity: -