Basic Information

Insect: Zootermopsis nevadensis
Gene Symbol: -
Assembly: GCA_000696155.1
Location: NW:61592-75032[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 5.5e-05 0.002 17.9 2.2 3 23 90 110 88 110 0.97

2 16 5.5e-05 0.002 17.9 2.2 3 23 118 138 116 138 0.97

3 16 5.5e-05 0.002 17.9 2.2 3 23 146 166 144 166 0.97

4 16 5.5e-05 0.002 17.9 2.2 3 23 174 194 172 194 0.97

5 16 5.5e-05 0.002 17.9 2.2 3 23 202 222 200 222 0.97

6 16 5.5e-05 0.002 17.9 2.2 3 23 230 250 228 250 0.97

7 16 5.5e-05 0.002 17.9 2.2 3 23 258 278 256 278 0.97

8 16 5.5e-05 0.002 17.9 2.2 3 23 286 306 284 306 0.97

9 16 5.5e-05 0.002 17.9 2.2 3 23 314 334 312 334 0.97

10 16 5.5e-05 0.002 17.9 2.2 3 23 342 362 340 362 0.97

11 16 5.5e-05 0.002 17.9 2.2 3 23 370 390 368 390 0.97

12 16 5.5e-05 0.002 17.9 2.2 3 23 398 418 396 418 0.97

13 16 5.5e-05 0.002 17.9 2.2 3 23 426 446 424 446 0.97

14 16 4.5e-05 0.0016 18.2 0.5 3 23 454 474 452 474 0.96

15 16 2.2 79 3.4 0.1 9 23 488 502 482 502 0.91

16 16 0.0023 0.082 12.8 0.8 7 23 514 530 509 530 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	5.5e-05	0.002	17.9	2.2	3	23	90	110	88	110	0.97
2	16	5.5e-05	0.002	17.9	2.2	3	23	118	138	116	138	0.97
3	16	5.5e-05	0.002	17.9	2.2	3	23	146	166	144	166	0.97
4	16	5.5e-05	0.002	17.9	2.2	3	23	174	194	172	194	0.97
5	16	5.5e-05	0.002	17.9	2.2	3	23	202	222	200	222	0.97
6	16	5.5e-05	0.002	17.9	2.2	3	23	230	250	228	250	0.97
7	16	5.5e-05	0.002	17.9	2.2	3	23	258	278	256	278	0.97
8	16	5.5e-05	0.002	17.9	2.2	3	23	286	306	284	306	0.97
9	16	5.5e-05	0.002	17.9	2.2	3	23	314	334	312	334	0.97
10	16	5.5e-05	0.002	17.9	2.2	3	23	342	362	340	362	0.97
11	16	5.5e-05	0.002	17.9	2.2	3	23	370	390	368	390	0.97
12	16	5.5e-05	0.002	17.9	2.2	3	23	398	418	396	418	0.97
13	16	5.5e-05	0.002	17.9	2.2	3	23	426	446	424	446	0.97
14	16	4.5e-05	0.0016	18.2	0.5	3	23	454	474	452	474	0.96
15	16	2.2	79	3.4	0.1	9	23	488	502	482	502	0.91
16	16	0.0023	0.082	12.8	0.8	7	23	514	530	509	530	0.93

Sequence Information

Coding Sequence: atgaaagaaagtgTGTATGTATCTATGGGGATTGAATTTTTACAGAACTGTATGGATTCGGTGAAAGATGAACCTCATTCAGACAGTGAGACTTGTCGGGATGGAAATCAGGTCATCAGTGTAAAAGCTGAGGATGTCTCGGATATGGAAATTGAAGAACACTATGTGGCAATAACATTTCCATTAAAGTGTCGATTGTCGTCATGTATTCTAAGAGGCAACCTGAAGACTCATCAAGGCATACACAGAGGAGAGAATCCATATGGCtgtaatgtgtgcaataaatcattcaatctaAGAGGCAACCTGAAGACTCATCAACACATTCACAGTGGAGAGCATCCATATGGCtgtaatgtgtgcaataaatcattcaatctaAGAGGCAACCTGAAGACTCATCAACACATTCACAGTGGAGAGCATCCATATGGCtgtaatgtgtgcaataaatcattcaatctaAGAGGCAACCTGAAGACTCATCAACACATTCACAGTGGAGAGCATCCATATGGCtgtaatgtgtgcaataaatcattcaatctaAGAGGCAACCTGAAGACTCATCAACACATTCACAGTGGAGAGCATCCATATGGCtgtaatgtgtgcaataaatcattcaatctaAGAGGCAACCTGAAGACTCATCAACACATTCACAGTGGAGAGCATCCATATGGCtgtaatgtgtgcaataaatcattcaatctaAGAGGCAACCTGAAGACTCATCAACACATTCACAGTGGAGAGCATCCATATGGCtgtaatgtgtgcaataaatcattcaatctaAGAGGCAACCTGAAGACTCATCAACACATTCACAGTGGAGAGCATCCATATGGCtgtaatgtgtgcaataaatcattcaatctaAGAGGCAACCTGAAGACTCATCAACACATTCACAGTGGAGAGCATCCATATGGCtgtaatgtgtgcaataaatcattcaatctaAGAGGCAACCTGAAGACTCATCAACACATTCACAGTGGAGAGCATCCATATGGCtgtaatgtgtgcaataaatcattcaatctaAGAGGCAACCTGAAGACTCATCAACACATTCACAGTGGAGAGCATCCATATGGCtgtaatgtgtgcaataaatcattcaatctaAGAGGCAACCTGAAGACTCATCAACACATTCACAGTGGAGAGCATCCATATGGCtgtaatgtgtgcaataaatcattcaatctaAGAGGCAACCTGAAGACTCATCAACACATTCACAGTGGAGAGCATCCATATGGCtgtaatgtgtgcaataaatcattcaatctaAGAGGCAACCTGAAGACTCATCAACACATTCACAGTGGAGAGCATCCATATGGCtgtaatgtgtgcaataaatcattcaatctaAGAGGCAACCTGAAGACTCATCAAGGCATACACAGTGGAGAGCATCCATGTGGCTGTAATGTGTACAATAATTCATTCAATCTAAGAGGCAACCTGAAGACTCATCAAGGCATACACAGTGGAGAGCATCCATATGGCTGTAATGTGtacaataaatcattcagtcacAGAAGCCAGCTGAAGATTCATCAATGCATACACAGGGGAGAGCAGTGA
Protein Sequence: MKESVYVSMGIEFLQNCMDSVKDEPHSDSETCRDGNQVISVKAEDVSDMEIEEHYVAITFPLKCRLSSCILRGNLKTHQGIHRGENPYGCNVCNKSFNLRGNLKTHQHIHSGEHPYGCNVCNKSFNLRGNLKTHQHIHSGEHPYGCNVCNKSFNLRGNLKTHQHIHSGEHPYGCNVCNKSFNLRGNLKTHQHIHSGEHPYGCNVCNKSFNLRGNLKTHQHIHSGEHPYGCNVCNKSFNLRGNLKTHQHIHSGEHPYGCNVCNKSFNLRGNLKTHQHIHSGEHPYGCNVCNKSFNLRGNLKTHQHIHSGEHPYGCNVCNKSFNLRGNLKTHQHIHSGEHPYGCNVCNKSFNLRGNLKTHQHIHSGEHPYGCNVCNKSFNLRGNLKTHQHIHSGEHPYGCNVCNKSFNLRGNLKTHQHIHSGEHPYGCNVCNKSFNLRGNLKTHQHIHSGEHPYGCNVCNKSFNLRGNLKTHQGIHSGEHPCGCNVYNNSFNLRGNLKTHQGIHSGEHPYGCNVYNKSFSHRSQLKIHQCIHRGEQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -