Znev008837.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Zootermopsis nevadensis
Gene Symbol
-
Assembly
GCA_000696155.1
Location
NW:707467-726608[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.00088 0.032 14.1 3.3 1 23 111 133 111 133 0.98
2 16 0.0077 0.28 11.1 4.5 1 23 139 161 139 161 0.95
3 16 0.0037 0.13 12.2 5.4 1 23 167 189 167 189 0.97
4 16 0.0072 0.26 11.2 6.0 1 23 194 216 194 216 0.96
5 16 0.0033 0.12 12.3 3.1 1 23 222 244 222 244 0.98
6 16 0.0032 0.12 12.3 9.1 1 23 252 274 252 274 0.97
7 16 4e-06 0.00014 21.5 0.1 1 23 280 302 280 302 0.97
8 16 1.4e-06 5e-05 22.9 0.7 1 23 308 330 308 330 0.98
9 16 6.4e-06 0.00023 20.8 1.1 1 23 336 358 336 358 0.96
10 16 0.00034 0.012 15.4 0.6 1 23 597 619 597 619 0.91
11 16 0.0002 0.0071 16.1 2.4 1 23 625 647 625 647 0.98
12 16 0.00067 0.024 14.5 0.3 2 23 654 675 653 675 0.93
13 16 8.6e-08 3.1e-06 26.7 1.3 1 23 681 703 681 703 0.98
14 16 9.7e-05 0.0035 17.1 2.0 1 23 709 731 709 731 0.97
15 16 8.3e-06 0.0003 20.5 1.9 1 23 737 759 737 759 0.97
16 16 4.1e-05 0.0015 18.3 1.8 1 19 765 783 765 786 0.95

Sequence Information

Coding Sequence
ATGCACATgtgtgttcttaattttatcagcaGTTACTTAGTAGGAGGATGGTTCCTTATgCATACCGTAGTGAACACAGTACAGGCTGATCCTAAGGAAAATGTGACCTCAACAGACCCTTCaATCAAATTCACTGCATCTcaagtaaattattctttacattgcaaaaataaataccaTTCTCATGGATATATTAATACTTCCTCTGAAGATGGGTATGTCAGGCATGGTGAAGGAAGTGGTTTTGAAATTCAGGCAGATGCTCAGAAACAGATgtcttttataaacaaaacatatgcttatactgaaaatgttaactACATCAAAAGTTACAGATGTCCAGTATGCTGTAAAACATTTGCATTACAGTCCAACATGAAGAAACATAAACAAGTACACAGTGGGGTGAAACCATACCATTGCTCTCAGTGCATGCAGTGTTTCACACGAAAGGCTGATTTGGAAAGACATAAGGGAGTGCATACTAATGACAGACCATATCATTGCACTGTGTGTAGGAAATCCTTCAAGTATAAATATGGCCTTTCAATGCATTTCAAATTGCATAAAGGAGAAGGTCACGACTGCCTTGTGTGCAAAAAATCATTCAGTACTCGACATATTTTAGAACGTCATAAGAAAACCCACGCAGAACAAAAGATTTTTCAGTGTTCGTTGTGTAAAGCTGTATTCAATGAAAGAAATTGCCTTACTAAACATTCAAGGATTCACACGAATGAACGCCCACGACCTTATGACTGTCATCTTTGTAAAAAGAAGTTTATCACTCGTCATGATTTGGAACGACATTGTAGAACTCATACTGGAGAAAAACCCTATCAGTGTGCAACATGTGAGAAAGCATTCAGTGATCGTGGTGATCTTACTAGGCATTTAGTTGTTCATTCAGGTGAGAAACGATACATATGCACAATTTGTAAAAAGGCCTTTACTATGCAAAGTTCATTAAAAACTCATGCCAGAGTTCATTCCGGTGATAAACCATACTCCTGTATAATATGTAAGAAGACATTCTCCCAGAAAGCAAATGTTGCAAGACACATGAAAACTCATGGGATTGGAAGTGTTCAgGAAGAAGATGGTGATCATGCCTATATCACGCCTGTGCCAAATATCGTGGAGGATTCTGTGAATAATGAAGTGAACACTTTTGAGGTGAAGGAGGAAATATCCATTGATGAACATGAAATATGCCTTCAGAACATAGACACTGTTATGTCTGATGAGAGAGTCTGTCTCCAAGAACCAACATTTGATAACCCGGAAGTAATACATGAAACATATATGGACCAGCAACATACACATAAAAAGCCAACCAATGAAGGATTGATGATTGAGGCCAAGGGTGGTACTATCTGTTTATGCCCACTTGTTTGTCTACATCTATGTGCGGTGGCGGCGGAGCGAAGAAAAATACATTTCACTATGGATGAAGTTACAATAAAGGAAGAGCCATATTCGGATGGTGAGTTGGATCCACTACAAACAACCAGTGAAGCTGCTGTAGACATTGAGGAAGAAAATGTCTGTAAAGAAGAGCCAGCAGTATCttctgaatgtaatgaaaattcCTTAGACATTTCTGCTGAAGATTTGAAAGAAGAGCCAGAATCTATTGTGGTTGAACCAAACGTGGATCTTGAAGAAAATGATGGAAACAGTGCTGTTGTGAATCATCGGAATGAAGGCTCGCCAGCAAGTGGAAGTGGTCTGGCATCAACAATTCAACACAGCCAAACAGTATGTGTGGACAGTAAAAATACCTATTTCATTTGTGGGGAATGTGGAAAAAGATTTAAAGTATTGAGCAAATTGACTGAACACTCTTTTCTTCATACGGGGGAAAAACCATATGtatgtgaaaaatgtaatagaGGATTTCATTCCATGAAGACATTGAAGAAACATATTCTGATTCATGCTGGAGCCAGAGTCATTAgttgtgatgtgtgtaataaaatttttaatcatattagTGCTCTAAAAACACATGCTGTGGTACATACTGGTGAAAAACCATACATTTGTAATGTATGTGGTAAAGGTTTTACTTTTAATAGTAATCTAAAGAGGCATTATCTAACACACACAGGGGATAGACCATATGTTTGTAAAGTATGTAATAAGAGATTTACTGATATCACGACTTACAAAAGACATTCACAGATCCATACAGGTGAGACGCCATACATGTGCAAAGTGTGTAGCAAGGGGTTCAGGGACAGTAGTACTCTAAAGAGGCATTTTGTGACACATACAGGTGAGAAACCATATACTTGCAAACTATGCAGTAAGGCATTTACAGATTGCAGCAGTTTAAGAAGACATTCTTTGATCAGAAACTGTGTGAAGGGAAAGAAGCATTAA
Protein Sequence
MHMCVLNFISSYLVGGWFLMHTVVNTVQADPKENVTSTDPSIKFTASQVNYSLHCKNKYHSHGYINTSSEDGYVRHGEGSGFEIQADAQKQMSFINKTYAYTENVNYIKSYRCPVCCKTFALQSNMKKHKQVHSGVKPYHCSQCMQCFTRKADLERHKGVHTNDRPYHCTVCRKSFKYKYGLSMHFKLHKGEGHDCLVCKKSFSTRHILERHKKTHAEQKIFQCSLCKAVFNERNCLTKHSRIHTNERPRPYDCHLCKKKFITRHDLERHCRTHTGEKPYQCATCEKAFSDRGDLTRHLVVHSGEKRYICTICKKAFTMQSSLKTHARVHSGDKPYSCIICKKTFSQKANVARHMKTHGIGSVQEEDGDHAYITPVPNIVEDSVNNEVNTFEVKEEISIDEHEICLQNIDTVMSDERVCLQEPTFDNPEVIHETYMDQQHTHKKPTNEGLMIEAKGGTICLCPLVCLHLCAVAAERRKIHFTMDEVTIKEEPYSDGELDPLQTTSEAAVDIEEENVCKEEPAVSSECNENSLDISAEDLKEEPESIVVEPNVDLEENDGNSAVVNHRNEGSPASGSGLASTIQHSQTVCVDSKNTYFICGECGKRFKVLSKLTEHSFLHTGEKPYVCEKCNRGFHSMKTLKKHILIHAGARVISCDVCNKIFNHISALKTHAVVHTGEKPYICNVCGKGFTFNSNLKRHYLTHTGDRPYVCKVCNKRFTDITTYKRHSQIHTGETPYMCKVCSKGFRDSSTLKRHFVTHTGEKPYTCKLCSKAFTDCSSLRRHSLIRNCVKGKKH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-